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Aliases for ZBTB39 Gene

Aliases for ZBTB39 Gene

  • Zinc Finger And BTB Domain Containing 39 2 3
  • Zinc Finger And BTB Domain-Containing Protein 39 3
  • KIAA0352 4
  • ZNF922 3

External Ids for ZBTB39 Gene

Summaries for ZBTB39 Gene

GeneCards Summary for ZBTB39 Gene

ZBTB39 (Zinc Finger And BTB Domain Containing 39) is a Protein Coding gene. An important paralog of this gene is ZBTB32.

UniProtKB/Swiss-Prot for ZBTB39 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBTB39 Gene

Genomics for ZBTB39 Gene

Genomic Location for ZBTB39 Gene

Start:
56,998,833 bp from pter
End:
57,006,513 bp from pter
Size:
7,681 bases
Orientation:
Minus strand

Genomic View for ZBTB39 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZBTB39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBTB39 Gene

Regulatory Elements for ZBTB39 Gene

Proteins for ZBTB39 Gene

  • Protein details for ZBTB39 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15060-ZBT39_HUMAN
    Recommended name:
    Zinc finger and BTB domain-containing protein 39
    Protein Accession:
    O15060
    Secondary Accessions:
    • A7MD38
    • Q9UD98

    Protein attributes for ZBTB39 Gene

    Size:
    712 amino acids
    Molecular mass:
    79001 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA20809.2; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZBTB39 Gene

Proteomics data for ZBTB39 Gene at MOPED

Post-translational modifications for ZBTB39 Gene

No Post-translational modifications

Other Protein References for ZBTB39 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZBTB39 Gene

Domains for ZBTB39 Gene

Gene Families for ZBTB39 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type
  • BTBD :BTB/POZ domain containing

UniProtKB/Swiss-Prot:

ZBT39_HUMAN
Domain:
  • Contains 1 BTB (POZ) domain.:
    • O15060
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • O15060
Similarity:
  • Contains 8 C2H2-type zinc fingers.:
    • O15060
genes like me logo Genes that share domains with ZBTB39: view

Function for ZBTB39 Gene

Molecular function for ZBTB39 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZBTB39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0005515 protein binding --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZBTB39: view

Phenotypes for ZBTB39 Gene

GenomeRNAi human phenotypes for ZBTB39:
genes like me logo Genes that share phenotypes with ZBTB39: view

miRNA for ZBTB39 Gene

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZBTB39 Gene

Localization for ZBTB39 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZBTB39 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZBTB39 Gene COMPARTMENTS Subcellular localization image for ZBTB39 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZBTB39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZBTB39: view

Pathways for ZBTB39 Gene

SuperPathways for ZBTB39 Gene

No Data Available

Interacting Proteins for ZBTB39 Gene

Gene Ontology (GO) - Biological Process for ZBTB39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZBTB39: view

No data available for Pathways by source for ZBTB39 Gene

Transcripts for ZBTB39 Gene

mRNA/cDNA for ZBTB39 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(47) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZBTB39 Gene

Zinc finger and BTB domain containing 39:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB39 Gene

No ASD Table

Relevant External Links for ZBTB39 Gene

GeneLoc Exon Structure for
ZBTB39
ECgene alternative splicing isoforms for
ZBTB39

Expression for ZBTB39 Gene

mRNA expression in normal human tissues for ZBTB39 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZBTB39 Gene

SOURCE GeneReport for Unigene cluster for ZBTB39 Gene Hs.591025

genes like me logo Genes that share expressions with ZBTB39: view

Orthologs for ZBTB39 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZBTB39 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZBTB39 36
  • 99.25 (n)
  • 99.16 (a)
ZBTB39 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZBTB39 36
  • 90.48 (n)
  • 93.35 (a)
ZBTB39 37
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZBTB39 36
  • 89.78 (n)
  • 91.27 (a)
mouse
(Mus musculus)
Mammalia Zbtb39 36
  • 86.03 (n)
  • 88.89 (a)
Zbtb39 16
Zbtb39 37
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZBTB39 37
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZBTB39 37
  • 83 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zbtb39 36
  • 86.37 (n)
  • 89.56 (a)
chicken
(Gallus gallus)
Aves ZBTB39 36
  • 75.62 (n)
  • 78.29 (a)
lizard
(Anolis carolinensis)
Reptilia ZBTB39 37
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.4668 36
zbtb39 36
  • 63.49 (n)
  • 62.81 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC565015 36
  • 51.01 (n)
  • 43.3 (a)
ZBTB39 37
  • 37 (a)
OneToOne
Species with no ortholog for ZBTB39:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZBTB39 Gene

ENSEMBL:
Gene Tree for ZBTB39 (if available)
TreeFam:
Gene Tree for ZBTB39 (if available)

Paralogs for ZBTB39 Gene

Paralogs for ZBTB39 Gene

genes like me logo Genes that share paralogs with ZBTB39: view

Variants for ZBTB39 Gene

Sequence variations from dbSNP and Humsavar for ZBTB39 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs379760 -- 57,006,024(+) GGGCA(A/G)CCAGA intron-variant
rs748894 -- 57,004,510(-) ACCAG(C/T)ACCAG reference, synonymous-codon
rs754398 -- 57,001,894(+) TCAGA(G/T)ACATC utr-variant-3-prime
rs2371717 -- 57,000,870(-) CCATC(C/T)TTGTT utr-variant-3-prime
rs2840074 -- 57,001,935(+) ACAGA(A/C)GTGGC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ZBTB39 Gene

Variant ID Type Subtype PubMed ID
nsv832428 CNV Gain 17160897

Relevant External Links for ZBTB39 Gene

HapMap Linkage Disequilibrium report
ZBTB39

Disorders for ZBTB39 Gene

No disorders were found for ZBTB39 Gene.

No data available for UniProtKB/Swiss-Prot for ZBTB39 Gene

Publications for ZBTB39 Gene

  1. Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9205841) Nagase T. … Ohara O. (DNA Res. 1997) 2 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3
  4. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  5. 3,400 new expressed sequence tags identify diversity of transcripts in human brain. (PMID: 8358434) Adams M.D. … Venter J.C. (Nat. Genet. 1993) 4

Products for ZBTB39 Gene

Sources for ZBTB39 Gene

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