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ZBTB39 Gene

protein-coding   GIFtS: 46
GCID: GC12M057392

Zinc Finger And BTB Domain Containing 39

  Search for ZBTB39
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger And BTB Domain Containing 391 2
ZNF9222
Zinc Finger And BTB Domain-Containing Protein 392
KIAA03523

External Ids:    HGNC: 290141   Entrez Gene: 98802   Ensembl: ENSG000001668607   UniProtKB: O150603   

Export aliases for ZBTB39 gene to outside databases

Previous GC identifers: GC12M055679 GC12M054431


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZBTB39 Gene:
ZBTB39 (zinc finger and BTB domain containing 39) is a protein-coding gene. An important paralog of this gene is ZBTB32.

UniProtKB/Swiss-Prot: ZBT39_HUMAN, O15060
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000012.12  NC_018923.2  NT_029419.13  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZBTB39 gene promoter:
         Nkx3-1   Nkx3-1 v1   CUTL1   Meis-1b   C/EBPalpha   AREB6   CP2   Meis-1a   TGIF   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZBTB39 promoter sequence
   Search Chromatin IP Primers for ZBTB39

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZBTB39


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q13.3   Ensembl cytogenetic band:  12q13.3   HGNC cytogenetic band: 12q13.3

ZBTB39 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZBTB39 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M057392:  view genomic region     (about GC identifiers)

Start:
57,392,617 bp from pter      End:
57,400,297 bp from pter
Size:
7,681 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ZBT39_HUMAN, O15060 (See protein sequence)
Recommended Name: Zinc finger and BTB domain-containing protein 39  
Size: 712 amino acids; 79001 Da
Sequence caution: Sequence=BAA20809.2; Type=Erroneous initiation;
Secondary accessions: A7MD38 Q9UD98

Explore the universe of human proteins at neXtProt for ZBTB39: NX_O15060

Explore proteomics data for ZBTB39 at MOPED


See ZBTB39 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_055645.1  
ENSEMBL proteins: 
 ENSP00000300101  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
BTBD: BTB/POZ domain containing
ZNF: Zinc fingers, C2H2-type

Selected InterPro protein domains (see all 6):
 IPR000210 BTB/POZ-like
 IPR015880 Znf_C2H2-like
 IPR011333 BTB/POZ_fold
 IPR013087 Znf_C2H2/integrase_DNA-bd
 IPR013069 BTB_POZ

Graphical View of Domain Structure for InterPro Entry O15060

ProtoNet protein and cluster: O15060

2 Blocks protein domains:
IPB000210 BTB/POZ domain
IPB007086 C2H2-type zinc finger signature


UniProtKB/Swiss-Prot: ZBT39_HUMAN, O15060
Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
Similarity: Contains 1 BTB (POZ) domain
Similarity: Contains 8 C2H2-type zinc fingers


ZBTB39 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: ZBT39_HUMAN, O15060
Function: May be involved in transcriptional regulation

     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003677DNA binding IEA--
GO:0005515protein binding ----
GO:0046872metal ion binding IEA--
     
ZBTB39 for ontologies           About GeneDecksing


Phenotypes:
     1 GenomeRNAi human phenotype for ZBTB39:
 Synthetic lethal with Ras 

Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ZBTB39
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   genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for ZBTB39

miRNA
Products:
    
miRTarBase miRNAs that target ZBTB39:
hsa-mir-98-5p (MIRT027838), hsa-let-7d-5p (MIRT032157), hsa-mir-106b-5p (MIRT044378), hsa-mir-548b-3p (MIRT016239)

Block miRNA regulation of human, mouse, rat ZBTB39 using miScript Target Protectors
Selected qRT-PCR Assays for microRNAs that regulate ZBTB39 (see all 104):
hsa-miR-548j hsa-miR-607 hsa-miR-300 hsa-miR-15a hsa-miR-128 hsa-miR-30d hsa-miR-138-2* hsa-miR-30a
SwitchGear 3'UTR luciferase reporter plasmidZBTB39 3' UTR sequence
Inhib. RNA
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OriGene RNAi products in human, mouse, rat for ZBTB39
Predesigned siRNA for gene silencing in human, mouse, rat ZBTB39

Gene Editing
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OriGene ORF clones in mouse, rat for ZBTB39
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GenScript: all cDNA clones in your preferred vector: ZBTB39 (NM_014830)
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZBTB39

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In Situ Assay
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB39


(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
ZBT39_HUMAN, O15060: Nucleus (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus3
cytosol2

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--

ZBTB39 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZBTB39
Interactions:

    Search GeneGlobe Interaction Network for ZBTB39

STRING Interaction Network Preview (showing 5 interactants - click image to see 6)

Selected Interacting proteins for ZBTB39 (ENSP000003001014) via UniProtKB, MINT, STRING, and/or I2D (see all 6)
InteractantInteraction Details
GeneCardExternal ID(s)
RNF4ENSP000003152124STRING: ENSP00000315212
POLR3EENSP000002998534STRING: ENSP00000299853
BCL6ENSP000002320144STRING: ENSP00000232014
ASB15ENSP000002756994STRING: ENSP00000275699
ZDHHC13ENSP000004001134STRING: ENSP00000400113
About this table

Gene Ontology (GO): 2 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-templated IEA--
GO:0006355regulation of transcription, DNA-templated IEA--

ZBTB39 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for ZBTB39 (ZBT39)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for ZBTB39 gene: 
NM_014830.2  

Unigene Cluster for ZBTB39:

Zinc finger and BTB domain containing 39
Hs.591025  [show with all ESTs]
Unigene Representative Sequence: NM_014830
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000300101(uc001sml.2)
miRNA
Products:
     
Block miRNA regulation of human, mouse, rat ZBTB39 using miScript Target Protectors
Selected qRT-PCR Assays for microRNAs that regulate ZBTB39 (see all 104):
hsa-miR-548j hsa-miR-607 hsa-miR-300 hsa-miR-15a hsa-miR-128 hsa-miR-30d hsa-miR-138-2* hsa-miR-30a
SwitchGear 3'UTR luciferase reporter plasmidZBTB39 3' UTR sequence
Inhib. RNA
Products:
     
OriGene RNAi products in human, mouse, rat for ZBTB39
Predesigned siRNA for gene silencing in human, mouse, rat ZBTB39
Clone
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OriGene ORF clones in mouse, rat for ZBTB39
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GenScript: all cDNA clones in your preferred vector: ZBTB39 (NM_014830)
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Primer
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  QuantiTect SYBR Green Assays in human, mouse, rat ZBTB39
  QuantiFast Probe-based Assays in human, mouse, rat ZBTB39

Additional mRNA sequence: 

AB002350.1 AK292468.1 BC140890.1 BC146867.1 BC152461.1 

3 DOTS entries:

DT.212953  DT.100745224  DT.121199002 

Selected AceView cDNA sequences (see all 47):

BG105447 AL040120 AU117582 AA678303 AU131263 CB265877 Z44541 AB002350 
AI685473 CB150427 AI304644 CK299899 BQ186782 BM755860 AW069817 AI859758 
AA922676 AU125325 AA285021 M85739 AA442375 BF507987 BX116937 Z40434 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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ZBTB39 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCTAGTTAGG
ZBTB39 Expression
About this image


ZBTB39 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 6) fully expand
 
 Brain (Nervous System)    fully expand to see all 4 entries
         Cerebral Cortex
 
 Ovary (Reproductive System)    fully expand to see all 2 entries
         Ovarian Mesenchymal Stroma Cells Ovary Interstitium
         Oviduct
 
 Trophoblast (Extraembryonic Tissues)
         Trophoblast Cells Trophoblast
 
 Pancreas (Endocrine System)
         Islets of Langerhans
 
 Testis (Reproductive System)
         Leydig Cells Testis Interstitium
ZBTB39 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

ZBTB39 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.591025
    Custom PCR Arrays for ZBTB39
Primer
Products:
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB39

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for ZBTB39 gene from Selected species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Zbtb391 , 5 zinc finger and BTB domain containing 391, 5 86.03(n)1
88.89(a)1
  10 (74.98 cM)5
3200801  NM_198035.11  NP_932152.11 
 1277395385 
chicken
(Gallus gallus)
Aves ZBTB391 zinc finger and BTB domain containing 39 75.62(n)
78.29(a)
  100858734  XM_003643870.2  XP_003643918.1 
lizard
(Anolis carolinensis)
Reptilia ZBTB396
zinc finger and BTB domain containing 39
76(a)
1 ↔ 1
2(95280752-95282851)
tropical clawed frog
(Xenopus tropicalis)
Amphibia Str.46682 Transcribed sequence with weak similarity to protein more 76.48(n)    AL847604.2 
zebrafish
(Danio rerio)
Actinopterygii LOC5650151 zinc finger and BTB domain-containing protein 39-like 51.01(n)
43.3(a)
  565015  XM_688326.6  XP_693418.3 


ENSEMBL Gene Tree for ZBTB39 (if available)
TreeFam Gene Tree for ZBTB39 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for ZBTB39 gene
ZBTB322  ZBTB162  

ZBTB39 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for ZBTB39 (see all 243)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 12 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs779616041,2
C,F--54441066(+) AATCTA/CTGTGT 1 -- us2k11Minor allele frequency- C:0.02WA 118
rs584854031,2
C,F--57392199(+) GTATCA/CACCTC 1 -- int12Minor allele frequency- C:0.04WA 120
rs1432663401,2
--57392201(+) ATCAAC/TCTCAT 1 -- int10--------
rs1912452161,2
--57392308(+) ACAAAC/TTGTAG 1 -- int10--------
rs1816321661,2
--57392442(+) TCCCAC/TTAAAA 1 -- int10--------
rs1867646331,2
--57392489(+) CAGGAA/CAGGAA 1 -- int10--------
rs1479066941,2
--57392586(+) GTATGA/TGCATA 1 -- int10--------
rs1415341001,2
--57392587(+) TATGAA/GCATAT 1 -- int10--------
rs1920689131,2
--57392636(+) TTTTTG/TTATTC 1 -- ut310--------
rs1833418351,2
--57392717(+) CTACTA/CTTTGG 1 -- ut310--------

HapMap Linkage Disequilibrium report for ZBTB39 (57392617 - 57400297 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for ZBTB39:    About this table    
Variant IDTypeSubtypePubMed ID
nsv832428CNV Gain17160897

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing ZBTB39
DNA2.0 Custom Variant and Variant Library Synthesis for ZBTB39

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for ZBTB39 gene integrated from 10 sources:
(articles sorted by number of sources associating them with ZBTB39)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9205841)1, 2, 3 Nagase T.... Ohara O. (DNA Res. 1997)
  2. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
  3. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (EMBO J. 2009)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  7. 3,400 new expressed sequence tags identify diversity of transcripts in human brain. (PubMed id 8358434)2 Adams M.D.... Venter J.C. (Nat. Genet. 1993)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 9880 HGNC: 29014 AceView: KIAA0352 Ensembl:ENSG00000166860 euGenes: HUgn9880
ECgene: ZBTB39 H-InvDB: ZBTB39

(According to HUGE)
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HUGE: KIAA0352

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for ZBTB39 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for ZBTB39 gene:
Search GeneIP for patents involving ZBTB39

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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