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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZBTB39 Gene

protein-coding   GIFtS: 45
GCID: GC12M057392

Zinc Finger And BTB Domain Containing 39

  Search for ZBTB39
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger And BTB Domain Containing 391 2
ZNF9222
Zinc Finger And BTB Domain-Containing Protein 392
KIAA03523

External Ids:    HGNC: 290141   Entrez Gene: 98802   Ensembl: ENSG000001668607   UniProtKB: O150603   

Export aliases for ZBTB39 gene to outside databases

Previous GC identifers: GC12M055679 GC12M054431


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZBTB39 Gene: 
ZBTB39 (zinc finger and BTB domain containing 39) is a protein-coding gene. GO annotations related to this gene include DNA binding and zinc ion binding. An important paralog of this gene is ZBTB32.

UniProtKB/Swiss-Prot: ZBT39_HUMAN, O15060
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.2  NT_029419.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZBTB39 gene promoter:
         Nkx3-1   Nkx3-1 v1   CUTL1   Meis-1b   C/EBPalpha   AREB6   CP2   Meis-1a   TGIF   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZBTB39 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZBTB39

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZBTB39


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q13.3   Ensembl cytogenetic band:  12q13.3   HGNC cytogenetic band: 12q13.3

ZBTB39 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZBTB39 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M057392:  view genomic region     (about GC identifiers)

Start:
57,392,617 bp from pter      End:
57,400,297 bp from pter
Size:
7,681 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZBT39_HUMAN, O15060 (See protein sequence)
Recommended Name: Zinc finger and BTB domain-containing protein 39  
Size: 712 amino acids; 79001 Da
Subcellular location: Nucleus (Potential)
Sequence caution: Sequence=BAA20809.2; Type=Erroneous initiation;
Secondary accessions: A7MD38 Q9UD98

Explore the universe of human proteins at neXtProt for ZBTB39: NX_O15060

Explore proteomics data for ZBTB39 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_O15060

  • ZBTB39 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZBTB39 Protein Expression
    REFSEQ proteins: NP_055645.1  
    ENSEMBL proteins: 
     ENSP00000300101  

    Human Recombinant Protein Products for ZBTB39: 
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    Cloud-Clone Corp. Proteins for ZBTB39 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    ZBTB39 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    BTBD: BTB/POZ domain containing
    ZNF: Zinc fingers, C2H2-type

    5/6 InterPro protein domains (see all 6):
     IPR015880 Znf_C2H2-like
     IPR011333 BTB/POZ_fold
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR013069 BTB_POZ
     IPR000210 BTB/POZ-like

    Graphical View of Domain Structure for InterPro Entry O15060

    ProtoNet protein and cluster: O15060

    2 Blocks protein domains:
    IPB000210 BTB/POZ domain
    IPB007086 C2H2-type zinc finger signature


    UniProtKB/Swiss-Prot: ZBT39_HUMAN, O15060
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 1 BTB (POZ) domain
    Similarity: Contains 8 C2H2-type zinc fingers


    ZBTB39 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZBT39_HUMAN, O15060
    Function: May be involved in transcriptional regulation

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0005515protein binding ----
    GO:0008270zinc ion binding ----
    GO:0046872metal ion binding IEA--
         
    ZBTB39 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for ZBTB39:
     Synthetic lethal with Ras 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for ZBTB39 
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    SwitchGear 3'UTR luciferase reporter plasmidZBTB39 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB39


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZBTB39

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for ZBTB39 (ENSP000003001014) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RNF4ENSP000003152124STRING: ENSP00000315212
    POLR3EENSP000002998534STRING: ENSP00000299853
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--

    ZBTB39 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZBTB39 (ZBT39)

    Search CenterWatch for drugs/clinical trials and news about ZBTB39 / ZBT39

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZBTB39 gene: 
    NM_014830.2  

    Unigene Cluster for ZBTB39:

    Zinc finger and BTB domain containing 39
    Hs.591025  [show with all ESTs]
    Unigene Representative Sequence: NM_014830
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000300101(uc001sml.2)
    miRNA
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    8/104 QIAGEN miScript miRNA Assays for microRNAs that regulate ZBTB39 (see all 104):
    hsa-miR-548j hsa-miR-607 hsa-miR-300 hsa-miR-15a hsa-miR-128 hsa-miR-30d hsa-miR-138-2* hsa-miR-30a
    SwitchGear 3'UTR luciferase reporter plasmidZBTB39 3' UTR sequence
    Inhib. RNA
    Products:
         
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                         Customized lentivirus expression plasmids for stable overexpression of ZBTB39 
    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZBTB39
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZBTB39

    Additional mRNA sequence: 

    AB002350.1 AK292468.1 BC140890.1 BC146867.1 BC152461.1 

    3 DOTS entries:

    DT.212953  DT.100745224  DT.121199002 

    24/47 AceView cDNA sequences (see all 47):

    AU131263 CK299899 AA285021 AA678303 AI685473 AI304644 AA442375 CB150427 
    AW069817 AL040120 AU117582 BG105447 AI859758 BQ186782 BM755860 CB265877 
    M85739 AU125325 Z44541 AB002350 AA922676 BX116937 Z40434 BU959154 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZBTB39 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCTAGTTAGG
    ZBTB39 Expression
    About this image


    See ZBTB39 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZBTB39

    SOURCE GeneReport for Unigene cluster: Hs.591025
        SABiosciences Custom PCR Arrays for ZBTB39
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB39

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for ZBTB39 gene from 5/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zbtb391 , 5 zinc finger and BTB domain containing 391, 5 86.03(n)1
    88.89(a)1
      10 (74.98 cM)5
    3200801  NM_198035.11  NP_932152.11 
     1277395385 
    chicken
    (Gallus gallus)
    Aves LOC1008587341 zinc finger and BTB domain-containing protein 39-like 75.62(n)
    78.29(a)
      100858734  XM_003643870.1  XP_003643918.1 
    lizard
    (Anolis carolinensis)
    Reptilia ZBTB396
    Uncharacterized protein
    77(a)
    1 ↔ 1
    2(95280752-95282851)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia Str.46682 Transcribed sequence with weak similarity to protein more 76.48(n)    AL847604.2 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC5650151 zinc finger and BTB domain-containing protein 39-like 50.29(n)
    42.22(a)
      565015  XM_688326.5  XP_693418.2 


    ENSEMBL Gene Tree for ZBTB39 (if available)
    TreeFam Gene Tree for ZBTB39 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZBTB39 gene
    ZBTB322  ZBTB162  

    ZBTB39 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/243 SNPs in ZBTB39 are shown (see all 243)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs779616041,2
    C,F--54441066(+) AATCTA/CTGTGT 1 -- us2k11Minor allele frequency- C:0.02WA 118
    rs584854031,2
    C,F--57392199(+) GTATCA/CACCTC 1 -- int12Minor allele frequency- C:0.04WA 120
    rs1432663401,2
    --57392201(+) ATCAAC/TCTCAT 1 -- int10--------
    rs1912452161,2
    --57392308(+) ACAAAC/TTGTAG 1 -- int10--------
    rs1816321661,2
    --57392442(+) TCCCAC/TTAAAA 1 -- int10--------
    rs1867646331,2
    --57392489(+) CAGGAA/CAGGAA 1 -- int10--------
    rs1479066941,2
    --57392586(+) GTATGA/TGCATA 1 -- int10--------
    rs1415341001,2
    --57392587(+) TATGAA/GCATAT 1 -- int10--------
    rs1920689131,2
    --57392636(+) TTTTTG/TTATTC 1 -- ut310--------
    rs1833418351,2
    --57392717(+) CTACTA/CTTTGG 1 -- ut310--------

    HapMap Linkage Disequilibrium report for ZBTB39 (57392617 - 57400297 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for ZBTB39:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv832428CNV Gain17160897

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing ZBTB39
    DNA2.0 Custom Variant and Variant Library Synthesis for ZBTB39

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZBTB39 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZBTB39)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9205841)1, 2, 3 Nagase T.... Ohara O. (1997)
    2. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    3. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    7. 3,400 new expressed sequence tags identify diversity of transcripts in human brain. (PubMed id 8358434)2 Adams M.D.... Venter J.C. (1993)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 9880 HGNC: 29014 AceView: KIAA0352 Ensembl:ENSG00000166860 euGenes: HUgn9880
    ECgene: ZBTB39 H-InvDB: ZBTB39

    (According to HUGE)
    About This Section
    HUGE: KIAA0352

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZBTB39 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZBTB39 gene:
    Search GeneIP for patents involving ZBTB39

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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