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ZBTB37 Gene

protein-coding   GIFtS: 43
GCID: GC01P173837

Zinc Finger And BTB Domain Containing 37

  Search for ZBTB37
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger And BTB Domain Containing 371 2
D430004I08Rik2
ZNF9082
Zinc Finger And BTB Domain-Containing Protein 372

External Ids:    HGNC: 283651   Entrez Gene: 846142   Ensembl: ENSG000001852787   UniProtKB: Q5TC793   

Export aliases for ZBTB37 gene to outside databases

Previous GC identifers: GC01P170569 GC01P172103 GC01P145062


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZBTB37 Gene:
ZBTB37 (zinc finger and BTB domain containing 37) is a protein-coding gene. An important paralog of this gene is ZBTB34.

UniProtKB/Swiss-Prot: ZBT37_HUMAN, Q5TC79
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the ZBTB37 gene promoter:
         Elk-1   AML1a   CUTL1   IRF-1   NF-kappaB   Evi-1   CREB   Ik-2   deltaCREB   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZBTB37 promoter sequence
   Search Chromatin IP Primers for ZBTB37

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZBTB37


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q25.1   Ensembl cytogenetic band:  1q25.1   HGNC cytogenetic band: 1q24.2

ZBTB37 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZBTB37 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P173837:  view genomic region     (about GC identifiers)

Start:
173,837,220 bp from pter      End:
173,872,687 bp from pter
Size:
35,468 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ZBT37_HUMAN, Q5TC79 (See protein sequence)
Recommended Name: Zinc finger and BTB domain-containing protein 37  
Size: 503 amino acids; 56055 Da
Secondary accessions: Q5TC80 Q96M87 Q9BQ88
Alternative splicing: 3 isoforms:  Q5TC79-1   Q5TC79-2   Q5TC79-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZBTB37: NX_Q5TC79

Explore proteomics data for ZBTB37 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZBTB37 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001116242.1  NP_115911.1  

    ENSEMBL proteins: 
     ENSP00000356677   ENSP00000356675   ENSP00000356674   ENSP00000415293   ENSP00000409408  

    ZBTB37 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for ZBTB37

     
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    Search eBioscience for ELISAs for ZBTB37 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    BTBD: BTB/POZ domain containing
    ZNF: Zinc fingers, C2H2-type

    Selected InterPro protein domains (see all 6):
     IPR000210 BTB/POZ-like
     IPR015880 Znf_C2H2-like
     IPR011333 BTB/POZ_fold
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR013069 BTB_POZ

    Graphical View of Domain Structure for InterPro Entry Q5TC79

    ProtoNet protein and cluster: Q5TC79

    1 Blocks protein domain: IPB000210 BTB/POZ domain

    UniProtKB/Swiss-Prot: ZBT37_HUMAN, Q5TC79
    Similarity: Contains 1 BTB (POZ) domain
    Similarity: Contains 3 C2H2-type zinc fingers


    Find genes that share domains with ZBTB37           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZBT37_HUMAN, Q5TC79
    Function: May be involved in transcriptional regulation

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0005515protein binding ----
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with ZBTB37           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for ZBTB37:
     Increased gamma-H2AX phosphory 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ZBTB37
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    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate ZBTB37 (see all 16):
    hsa-miR-124* hsa-miR-142-5p hsa-miR-495 hsa-miR-125a-5p hsa-miR-340 hsa-miR-183* hsa-miR-125b hsa-miR-7-1*
    Browse SwitchGear 3'UTR luciferase reporter plasmids
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB37


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZBT37_HUMAN, Q5TC79: Nucleus (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus4
    cytosol2

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    Find genes that share ontologies with ZBTB37           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZBTB37
    Interactions:

        Search GeneGlobe Interaction Network for ZBTB37

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for ZBTB37 (Q5TC793 ENSP000003566744) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SH3BP4Q9P0V33, ENSP000003402374I2D: score=1 STRING: ENSP00000340237
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IEA--

    Find genes that share ontologies with ZBTB37           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZBTB37 (ZBT37)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZBTB37 gene (2 alternative transcripts): 
    NM_001122770.1  NM_032522.3  

    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000367704(uc001gjp.1) ENST00000367702 ENST00000367701 ENST00000427304(uc009wwp.1 uc001gjr.2)
    ENST00000432989(uc001gjq.4)
    miRNA
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    Block miRNA regulation of human, mouse, rat ZBTB37 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate ZBTB37 (see all 16):
    hsa-miR-124* hsa-miR-142-5p hsa-miR-495 hsa-miR-125a-5p hsa-miR-340 hsa-miR-183* hsa-miR-125b hsa-miR-7-1*
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Primer
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat ZBTB37
      QuantiTect SYBR Green Assays in human, mouse, rat ZBTB37
      QuantiFast Probe-based Assays in human, mouse, rat ZBTB37

    21 AceView cDNA sequences:

    BC006315 AW204948 BC003116 AW237081 BF222713 AA833546 NM_032522 AW139260 
    AW136373 BX279840 BI850982 AI954694 AF318371 AK057310 BF057788 AW590509 
    BF310280 BE262601 BI459864 CD708955 AV754688 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB37    About this scheme

    ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5
    SP1:        -     -                                 
    SP2:              -                                 
    SP3:                                                
    SP4:                                                


    ECgene alternative splicing isoforms for ZBTB37

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZBTB37 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CATTTTTGTG
    ZBTB37 Expression
    About this image

    ZBTB37 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZBTB37 Protein Expression
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ZBTB37 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zbtb371 , 5 zinc finger and BTB domain containing 371, 5 91.3(n)1
    95.22(a)1
      1 (69.75 cM)5
    2408691  NM_173424.31  NP_775600.11 
     1610087945 
    chicken
    (Gallus gallus)
    Aves ZBTB371 zinc finger and BTB domain containing 37 81.11(n)
    93.24(a)
      429073  XM_004943267.1  XP_004943324.1 
    lizard
    (Anolis carolinensis)
    Reptilia ZBTB376
    zinc finger and BTB domain containing 37
    89(a)
    1 ↔ 1
    4(71400332-71409206)
    African clawed frog
    (Xenopus laevis)
    Amphibia MGC536392 hypothetical protein MGC53639 72.84(n)    BC044333.1 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.161622 Transcribed sequence with moderate similarity to protein more 74.45(n)    BG799142.1 


    ENSEMBL Gene Tree for ZBTB37 (if available)
    TreeFam Gene Tree for ZBTB37 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZBTB37 gene
    ZBTB342  ZBTB222  NACC12  ZBTB452  ZBTB62  ZBTB92  NACC22  ZBTB262  
    ZBTB432  ZBTB122  ZBTB202  
    Selected SIMAP similar genes for ZBTB37 using alignment to 1 protein entry:     ZBT37_HUMAN(see all similar genes):
    pp9003    DKFZp434J0650    kr-znf3    ZBTB34    HZF16    KLHL32
    ZNF55    ZNF78L1    ZNF    A-328A3.4    ZNF72    ZFS-5
    ZNF697    ZNF844    PLZF    ZNF808    ZFS-2    DKFZp686N0199

    Find genes that share paralogs with ZBTB37           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZBTB37 (see all 333)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs13227741,2
    C,F,O,A,H--173839240(+) TGAAAC/TTTTAC 2 -- int117Minor allele frequency- T:0.37NA EA NS WA CSA 1151
    rs168464951,2
    C,F,H--173839286(+) CCATCC/TGGGAA 2 -- int110Minor allele frequency- T:0.01NA NS 994
    rs1497381471,2
    C--173839387(+) ATACAA/GTTGGA 4 Q syn10--------
    rs94257611,2
    C,F,H--173839435(+) AACCAG/ATTGCG 4 /Q syn124Minor allele frequency- A:0.13NS EA NA WA CSA EU 7873
    rs1995335671,2
    --173839443(+) GCGCAC/TGCAGG 4 T M mis10--------
    rs1447996871,2
    C,F--173839540(+) CGGGAT/CCACAT 4 /D syn12Minor allele frequency- C:0.00NA EU 5875
    rs2003021891,2
    C--173839690(+) TTTCTG/ACAAAT 4 /L syn11Minor allele frequency- A:0.00EU 1299
    rs1394611941,2
    C,F--173839830(+) GGTTAC/GACCAA 4 T R mis11Minor allele frequency- G:0.00NA 4548
    rs2018276941,2
    --173839863(+) ACGACA/GTAATA 4 H R mis10--------
    rs2015447991,2
    C--173839884(+) AAACCA/GGCGAG 4 Q R mis10--------

    HapMap Linkage Disequilibrium report for ZBTB37 (173837220 - 173872687 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for ZBTB37:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv831926CNV Gain+Loss17160897
    dgv149e1CNV Complex17122850

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZBTB37
    DNA2.0 Custom Variant and Variant Library Synthesis for ZBTB37

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with ZBTB37           About GenesLikeMe

    Genetic Association Database (GAD): ZBTB37
    Human Genome Epidemiology (HuGE) Navigator: ZBTB37 (1 document)

    Export disorders for ZBTB37 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZBTB37 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZBTB37)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PubMed id 19240061)1, 4 Trynka G....Wijmenga C. (Gut 2009)
    2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (Nature 2006)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    6. Identification of multi-SH3 domain-containing protein interactome in pancreatic cancer: a yeast two-hybrid approach. (PubMed id 18654987)1 Thalappilly S....Dusetti N.J. (Proteomics 2008)
    7. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 84614 HGNC: 28365 AceView: ZBTB37 Ensembl:ENSG00000185278 euGenes: HUgn84614
    ECgene: ZBTB37 H-InvDB: ZBTB37

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZBTB37 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZBTB37 gene:
    Search GeneIP for patents involving ZBTB37

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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