ZBTB33 Gene
protein-coding GIFtS: 53
GCID: GC0XP119384
|
|
zinc finger and BTB domain containing 33
| |
Aliases
for ZBTB33 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Zinc Finger And BTB Domain Containing 331 2 | | Zinc Finger And BTB Domain-Containing Protein 332 3 | | ZNF3481 2 3 | | Kaiso1 | | KAISO1 3 5 | | Kaiso Transcription Factor2 | | WUGSC:H_DJ525N14.11 2 | | Transcriptional Regulator Kaiso2 | | ZNF-Kaiso1 | | |
Export aliases for ZBTB33 gene to outside databasesPrevious GC identifers: GC0XP118139 GC0XP119166 GC0XP119268 GC0XP108838 |
Summaries
for ZBTB33 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for ZBTB33:
This gene encodes a transcriptional regulator with bimodal DNA-binding specificity, which binds to methylated CGCG andalso to the non-methylated consensus KAISO-binding site TCCTGCNA. The protein contains an N-terminal POZ/BTB domainand 3 C-terminal zinc finger motifs. It recruits the N-CoR repressor complex to promote histone deacetylation and theformation of repressive chromatin structures in target gene promoters. It may contribute to the repression of targetgenes of the Wnt signaling pathway, and may also activate transcription of a subset of target genes by the recruitmentof catenin delta-2 (CTNND2). Its interaction with catenin delta-1 (CTNND1) inhibits binding to both methylated andnon-methylated DNA. It also interacts directly with the nuclear import receptor Importin-α2 (also known askaryopherin alpha2 or RAG cohort 1), which may mediate nuclear import of this protein. Alternatively splicedtranscript variants encoding the same protein have been identified.(provided by RefSeq, May 2010)
UniProtKB/Swiss-Prot: KAISO_HUMAN, Q86T24Function: Transcriptional regulator with bimodal DNA-binding specificity. Binds to methylated CpG dinucleotides in theconsensus sequence 5'-CGCG-3' and also binds to the non-methylated consensus sequence 5'-CTGCNA-3'. Recruits the N-CoRrepressor complex to promote histone deacetylation and the formation of repressive chromatin structures in target genepromoters. May contribute to the repression of target genes of the Wnt signaling pathway. May also activatetranscription of a subset of target genes by the recruitment of CTNND2
Gene Wiki entry for ZBTB33
|
Genomic Views
for ZBTB33 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000023.10 NC_018934.1 NT_011786.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ZBTB33 gene promoter:
p53 POU3F1 CUTL1 HNF-4alpha2 HNF-4alpha1 IRF-2 POU2F1 POU2F1a
Other transcription factors
Search SABiosciences Chromatin IP Primers for ZBTB33
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZBTB33 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xq23 Ensembl cytogenetic band: Xq24 HGNC cytogenetic band: Xq23ZBTB33 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP119384: view genomic region
(about GC identifiers)
Start:
|
119,384,607 bp from pter |
End:
|
119,392,253 bp from pter |
Size:
|
7,647 bases |
Orientation:
|
plus strand |
|
Proteins
for ZBTB33 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: KAISO_HUMAN, Q86T24 (See
protein sequence)Recommended Name: Transcriptional regulator Kaiso Size: 672 amino acids; 74484 Da
Subunit: Self-associates. Interacts with CTNND2 (By similarity). Interacts with CTNND1, and this interaction inhibitsbinding to both methylated and non-methylated DNA. Interacts with NCOR1. Interacts with KPNA2/RCH1, which may mediatenuclear import of this protein
Subcellular location: Nucleus. Cytoplasm. Note=Also cytoplasmic in cells grown at high densities
6 PDB 3D structures from  and Proteopedia  for ZBTB33:2LT7 (3D)
3FKC (3D)
3M4T (3D)
3M8V (3D)
4F6M (3D)
4F6N (3D)
Secondary accessions: B2R5U6 O00319 Q7Z361 Q8IVP6 Q8N3P0Explore the universe of human proteins at neXtProt for ZBTB33: NX_Q86T24
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q86T24
ZBTB33 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001171671.1 NP_006768.1
ENSEMBL proteins: ENSP00000314153 ENSP00000450969
Human Recombinant Protein Products for ZBTB33:
Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table
ZBTB33 for ontologies About GeneDecksing
ZBTB33 Antibody Products:
Assay Products for ZBTB33: |
Protein
Domains /
Families
for ZBTB33 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ZBTB33 for domains About GeneDecksing
5/6 InterPro domains/families (see all 6):Graphical View of Domain Structure for InterPro Entry Q86T24ProtoNet protein and cluster: Q86T24 1 Blocks protein family: IPB000210 BTB/POZ domain
UniProtKB/Swiss-Prot: KAISO_HUMAN, Q86T24Similarity: Contains 1 BTB (POZ) domainSimilarity: Contains 3 C2H2-type zinc fingers |
Function
for ZBTB33 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: KAISO_HUMAN, Q86T24Function: Transcriptional regulator with bimodal DNA-binding specificity. Binds to methylated CpG dinucleotides in theconsensus sequence 5'-CGCG-3' and also binds to the non-methylated consensus sequence 5'-CTGCNA-3'. Recruits the N-CoRrepressor complex to promote histone deacetylation and the formation of repressive chromatin structures in target genepromoters. May contribute to the repression of target genes of the Wnt signaling pathway. May also activatetranscription of a subset of target genes by the recruitment of CTNND2Induction: Induced in vascular endothelium by wounding. This effect is potentiated by prior laminar shear stress, whichenhances wound closure Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
ZBTB33 for ontologies About GeneDecksing
Phenotypes:
4 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Zbtb33):
ZBTB33 for phenotypes About GeneDecksing
Animal Models:
Mouse knock-out Zbtb33tm1.1Bird for ZBTB33
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZBTB33 (see all 2)
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB33 |
|
Pathways & Interactions
for ZBTB33 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Wnt Signaling Pathway | |
1  BioSystems Pathway for ZBTB33
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ZBTB33
STRING Interaction
Network Preview (showing 5 interactants - click image to see 10)
5/41 Interacting proteins for ZBTB33 (Q86T242, 3 ENSP000003141534) via UniProtKB, MINT, STRING, and/or I2D (see all 41)About this table
Gene Ontology (GO): 4 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006351 | transcription, DNA-dependent |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- | | GO:0016055 | Wnt receptor signaling pathway |
IEA | -- | | GO:0035556 | intracellular signal transduction |
TAS | 10207085 |
ZBTB33 for ontologies About GeneDecksing
|
Drugs & Compounds
for ZBTB33 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ZBTB33
Search CenterWatch for drugs/clinical trials and news about ZBTB33 / KAISO
|
Transcripts
for ZBTB33 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for ZBTB33 gene (2 alternative transcripts): NM_001184742.1 NM_006777.3 Unigene Cluster for ZBTB33: Zinc finger and BTB domain containing 33 Hs.143604 [show with all ESTs]Unigene Representative Sequence: NM_0011847422 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000326624(uc010nqm.1 uc004esn.1) ENST00000557385
Clone
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Additional cDNA sequence: AK092998.1 AK094230.1 AK312321.1 AL833604.1 AL833856.1 BC042753.1 BX538016.1 BX538101.1 6 DOTS entries: DT.413928 DT.121301268 DT.121301263 DT.100721641 DT.121301271 DT.95237159 24/121 AceView cDNA sequences (see all 121): T61211 BF971259 CF593941 NM_006777 AA463633 BC042753 BX538101 AI762551 CB148666 BF512729 BF514257 AA279190 BX955913 AA279178 BQ186564 BE018480 AL833856 BQ945983 BE302089 AK094230 AA293205 BM786592 BP335246 BE790431
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB33 About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b |
|---|
|
| SP1: | | | | | | | | | | | |
| SP2: | | | | | - | | | | | |
ECgene alternative splicing isoforms for ZBTB33
|
Expression
for ZBTB33 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ZBTB33 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GCCTGATATT
About this image
See ZBTB33 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZBTB33
SOURCE GeneReport for Unigene cluster: Hs.143604
UniProtKB/Swiss-Prot: KAISO_HUMAN, Q86T24Tissue specificity: Expressed in vascular endothelium
SABiosciences Custom PCR Arrays for ZBTB33
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ZBTB33
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZBTB33 |
Orthologs
for ZBTB33 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for ZBTB33 gene from 4/11 species (see all 11) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
ZBTB331 |
zinc finger and BTB domain containing 33 |
67.17(n)
64.11(a) |
|
422367 NM_001079729.1 NP_001073197.1 |
lizard
(Anolis carolinensis) |
Reptilia |
ZBTB336 |
-- |
59(a) |
1 ↔ 1 |
GL343950.1(57635-59689) |
African clawed frog
(Xenopus laevis) |
Amphibia |
Kaiso2 |
DNA-methylation dependent transcriptional repressor more |
77.14(n) |
|
AF420316.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
zbtb331 |
zinc finger and BTB domain containing 33 |
54.92(n)
48.99(a) |
|
562507 NM_001100008.1 NP_001093478.1 |
ENSEMBL Gene Tree for ZBTB33 (if available)
TreeFam Gene Tree for ZBTB33 (if available) |
Paralogs
for ZBTB33 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ZBTB33 gene
- ZBTB212 ZBTB382 ZBTB42
ZBTB33 for paralogs About GeneDecksing
|
Genomic Variants
for ZBTB33 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr X pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for ZBTB33 (119384607 - 119392253 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ZBTB33: --
Locus Specific Mutation Databases (LSDB): ZBTB33
| SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZBTB33 |
|
Disorders
/ Diseases
for ZBTB33 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ZBTB33 for disorders About GeneDecksing
OMIM gene information: 300329
OMIM disorders: --
3  diseases for ZBTB33: About MalaCardsrett syndrome colon cancer lung cancer
Export disorders for ZBTB33 gene to outside databases
|
Publications
for ZBTB33 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ZBTB33 gene, integrated from 9 sources (see all 52):
(articles sorted by number of sources associating them with ZBTB33) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Nuclear import of the BTB/POZ transcriptional regulator Kaiso. (PubMed id 15564377)1, 2, 9 Kelly K.F.... Daniel J.M. (2004)
- The p120 catenin partner Kaiso is a DNA methylation-dependent transcriptional repressor. (PubMed id 11445535)1, 2, 9 Prokhortchouk A.... Prokhortchouk E. (2001)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (2005)
- Expression and nuclear location of the transcriptional repressor Kaiso is regulated by the tumor microenvironment. (PubMed id 15781635)1, 2 Soubry A.... van Roy F. (2005)
- The catenin p120ctn inhibits Kaiso-mediated transcriptional repression of the beta-catenin/TCF target gene matrilysin. (PubMed id 15817151)1, 2 Spring C.M....Daniel J.M. (2005)
- Kaiso is a genome-wide repressor of transcription that is essential for amphibian development. (PubMed id 15548582)1, 2 Ruzov A.... Meehan R.R. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Laminar shear stress differentially modulates gene expression of p120 catenin, Kaiso transcription factor, and vascular endothelial cadherin in human coronary artery endothelial cells. (PubMed id 14699141)1, 2 Kondapalli J.... Albuquerque M.L.C. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- N-CoR mediates DNA methylation-dependent repression through a methyl CpG binding protein Kaiso. (PubMed id 14527417)1, 2 Yoon H.-G.... Wong J. (2003)
|
External Searches for ZBTB33 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ZBTB33 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ZBTB33 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZBTB33 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ZBTB33 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ZBTB33 gene:
Search GeneIP for patents involving ZBTB33
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ZBTB33 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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