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Aliases for ZBTB20-AS4 Gene

Subcategory (RNA class) for ZBTB20-AS4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZBTB20-AS4 Gene

  • ZBTB20 Antisense RNA 4 2 3 5
  • ZBTB20 Antisense RNA 4 (Non-Protein Coding) 2

External Ids for ZBTB20-AS4 Gene

Previous GeneCards Identifiers for ZBTB20-AS4 Gene

  • GC00U933182
  • GC03P114820

Summaries for ZBTB20-AS4 Gene

GeneCards Summary for ZBTB20-AS4 Gene

ZBTB20-AS4 (ZBTB20 Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBTB20-AS4 Gene

Genomics for ZBTB20-AS4 Gene

Regulatory Elements for ZBTB20-AS4 Gene

Enhancers for ZBTB20-AS4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G115098 1.1 ENCODE dbSUPER 0.7 -0.4 -379 3.1 TBP PKNOX1 FOXA2 ZSCAN4 ZFP64 ZNF48 RAD21 YY1 ZNF302 ZNF366 ZBTB20 ENSG00000259976 ZBTB20-AS4 GC03P115085
GH03G115091 1.1 Ensembl ENCODE dbSUPER 0.4 -8.1 -8098 1.0 CTCF ZNF654 ZNF362 TRIM22 MAX RAD21 YY1 STAT3 SMC3 DEK ZBTB20 GC03P115085 ZBTB20-AS4
GH03G115097 0.5 Ensembl dbSUPER 0.7 -2.7 -2723 0.2 ZBTB20 ZBTB20-AS4 GC03P115085
GH03G115101 0.4 dbSUPER 0.7 +2.0 1958 0.9 PKNOX1 POLR2A ZBTB20 ZBTB20-AS4
GH03G115144 1.1 ENCODE 0.2 +46.6 46648 4.2 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 ZNF143 ZNF207 ZBTB20 ZBTB20-AS4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZBTB20-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZBTB20-AS4 Gene

Chromosome:
3
Start:
115,100,423 bp from pter
End:
115,103,061 bp from pter
Size:
2,639 bases
Orientation:
Plus strand

Genomic View for ZBTB20-AS4 Gene

Genes around ZBTB20-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBTB20-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBTB20-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBTB20-AS4 Gene

Proteins for ZBTB20-AS4 Gene

Post-translational modifications for ZBTB20-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBTB20-AS4 Gene

Domains & Families for ZBTB20-AS4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBTB20-AS4 Gene

Function for ZBTB20-AS4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBTB20-AS4 Gene

Localization for ZBTB20-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZBTB20-AS4 Gene

Pathways & Interactions for ZBTB20-AS4 Gene

SuperPathways for ZBTB20-AS4 Gene

No Data Available

Interacting Proteins for ZBTB20-AS4 Gene

Gene Ontology (GO) - Biological Process for ZBTB20-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBTB20-AS4 Gene

Drugs & Compounds for ZBTB20-AS4 Gene

No Compound Related Data Available

Transcripts for ZBTB20-AS4 Gene

mRNA/cDNA for ZBTB20-AS4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB20-AS4 Gene

No ASD Table

Relevant External Links for ZBTB20-AS4 Gene

GeneLoc Exon Structure for
ZBTB20-AS4
ECgene alternative splicing isoforms for
ZBTB20-AS4

Expression for ZBTB20-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZBTB20-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for ZBTB20-AS4 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x4.8).
genes like me logo Genes that share expression patterns with ZBTB20-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBTB20-AS4 Gene

Orthologs for ZBTB20-AS4 Gene

Evolution for ZBTB20-AS4 Gene

ENSEMBL:
Gene Tree for ZBTB20-AS4 (if available)
TreeFam:
Gene Tree for ZBTB20-AS4 (if available)

No data available for Orthologs for ZBTB20-AS4 Gene

Paralogs for ZBTB20-AS4 Gene

No data available for Paralogs for ZBTB20-AS4 Gene

Variants for ZBTB20-AS4 Gene

Sequence variations from dbSNP and Humsavar for ZBTB20-AS4 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000478822 -- 115,101,288(+) GCTTC(A/T)AAATA intron-variant
rs1000530653 -- 115,101,955(+) CGATT(C/T)TTCAC intron-variant
rs1000600068 -- 115,100,898(+) TACAA(C/T)AGGAA intron-variant
rs1001201658 -- 115,102,434(+) TGTCA(A/G)TTAAA intron-variant
rs1001881862 -- 115,102,803(+) CTACT(-/AAAAATAC)AAAAA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ZBTB20-AS4 Gene

Variant ID Type Subtype PubMed ID
nsv829683 CNV gain 17160897
nsv955327 CNV duplication 24416366

Relevant External Links for ZBTB20-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBTB20-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZBTB20-AS4 Gene

Disorders for ZBTB20-AS4 Gene

Relevant External Links for ZBTB20-AS4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZBTB20-AS4

No disorders were found for ZBTB20-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBTB20-AS4 Gene

Publications for ZBTB20-AS4 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for ZBTB20-AS4 Gene

Sources for ZBTB20-AS4 Gene

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