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Aliases for ZBTB20-AS1 Gene

Subcategory (RNA class) for ZBTB20-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZBTB20-AS1 Gene

  • ZBTB20 Antisense RNA 1 2 3 5
  • ZBTB20 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ZBTB20-AS1 Gene

Previous GeneCards Identifiers for ZBTB20-AS1 Gene

  • GC03P114072

Summaries for ZBTB20-AS1 Gene

GeneCards Summary for ZBTB20-AS1 Gene

ZBTB20-AS1 (ZBTB20 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZBTB20-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBTB20-AS1 Gene

Genomics for ZBTB20-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZBTB20-AS1 Gene

Promoters and enhancers for ZBTB20-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I114383 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 9 +32.7 32690 2.2 CTCF BRCA1 RAD21 RFX5 YY1 ZNF366 SMC3 ZNF143 PRDM10 ZNF444 ZBTB20-AS1 GC03P114421 ZBTB20
GH03I114363 Enhancer 0.8 ENCODE dbSUPER 10.3 +12.6 12574 2.6 CTCF ZNF654 FOXA2 FOXA3 ZNF143 SMC3 CUX1 RAD21 ZBTB20-AS1 GC03P114421 ZBTB20
GH03I114355 Enhancer 0.4 ENCODE 9.3 +4.6 4647 1.5 SP1 POU5F1 BATF ZBTB20-AS1 GC03P114421 ZBTB20
GH03I114312 Enhancer 0.4 dbSUPER 4.7 -35.8 -35759 6.7 ZSCAN4 JUNB RUNX3 MIR568 ZBTB20-AS1 CFAP44-AS1 ENSG00000259976 TIGIT ZBTB20
GH03I114390 Enhancer 0.2 dbSUPER 5.1 +39.1 39083 1.8 ZBTB20-AS1 GC03P114421 ZBTB20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZBTB20-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZBTB20-AS1 Gene

Genomic Locations for ZBTB20-AS1 Gene
chr3:114,351,811-114,388,978
(GRCh38/hg38)
Size:
37,168 bases
Orientation:
Plus strand
chr3:114,070,658-114,107,825
(GRCh37/hg19)

Genomic View for ZBTB20-AS1 Gene

Genes around ZBTB20-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBTB20-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBTB20-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBTB20-AS1 Gene

Proteins for ZBTB20-AS1 Gene

Post-translational modifications for ZBTB20-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBTB20-AS1 Gene

Domains & Families for ZBTB20-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBTB20-AS1 Gene

Function for ZBTB20-AS1 Gene

Phenotypes From GWAS Catalog for ZBTB20-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBTB20-AS1 Gene

Localization for ZBTB20-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZBTB20-AS1 Gene

Pathways & Interactions for ZBTB20-AS1 Gene

SuperPathways for ZBTB20-AS1 Gene

No Data Available

Interacting Proteins for ZBTB20-AS1 Gene

Gene Ontology (GO) - Biological Process for ZBTB20-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBTB20-AS1 Gene

Drugs & Compounds for ZBTB20-AS1 Gene

No Compound Related Data Available

Transcripts for ZBTB20-AS1 Gene

mRNA/cDNA for ZBTB20-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZBTB20-AS1 Gene

ZBTB20 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB20-AS1 Gene

No ASD Table

Relevant External Links for ZBTB20-AS1 Gene

GeneLoc Exon Structure for
ZBTB20-AS1
ECgene alternative splicing isoforms for
ZBTB20-AS1

Expression for ZBTB20-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZBTB20-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZBTB20-AS1 Gene

This gene is overexpressed in Testis (x45.3).

SOURCE GeneReport for Unigene cluster for ZBTB20-AS1 Gene:

Hs.745259
genes like me logo Genes that share expression patterns with ZBTB20-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBTB20-AS1 Gene

Orthologs for ZBTB20-AS1 Gene

Evolution for ZBTB20-AS1 Gene

ENSEMBL:
Gene Tree for ZBTB20-AS1 (if available)
TreeFam:
Gene Tree for ZBTB20-AS1 (if available)

No data available for Orthologs for ZBTB20-AS1 Gene

Paralogs for ZBTB20-AS1 Gene

No data available for Paralogs for ZBTB20-AS1 Gene

Variants for ZBTB20-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZBTB20-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1057519435 pathogenic, Primrose syndrome 114,350,292(+) G/A upstream_transcript_variant
rs483353064 pathogenic, Primrose syndrome 114,350,310(+) T/G upstream_transcript_variant
rs483353065 pathogenic, Primrose syndrome 114,350,307(+) G/C upstream_transcript_variant
rs483353066 pathogenic, Primrose syndrome 114,350,291(+) T/C upstream_transcript_variant
rs483353067 pathogenic, likely-pathogenic, Primrose syndrome, not provided 114,350,276(+) G/A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZBTB20-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv829679 CNV gain 17160897

Additional Variant Information for ZBTB20-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBTB20-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZBTB20-AS1 Gene

Disorders for ZBTB20-AS1 Gene

Additional Disease Information for ZBTB20-AS1

No disorders were found for ZBTB20-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBTB20-AS1 Gene

Publications for ZBTB20-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for ZBTB20-AS1 Gene

Sources for ZBTB20-AS1 Gene

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