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Aliases for ZBTB20-AS1 Gene

Subcategory (RNA class) for ZBTB20-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZBTB20-AS1 Gene

  • ZBTB20 Antisense RNA 1 2 3 5
  • ZBTB20 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ZBTB20-AS1 Gene

Previous GeneCards Identifiers for ZBTB20-AS1 Gene

  • GC03P114072

Summaries for ZBTB20-AS1 Gene

GeneCards Summary for ZBTB20-AS1 Gene

ZBTB20-AS1 (ZBTB20 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBTB20-AS1 Gene

Genomics for ZBTB20-AS1 Gene

Regulatory Elements for ZBTB20-AS1 Gene

Enhancers for ZBTB20-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G114363 0.9 ENCODE dbSUPER 10.3 +12.6 12574 2.6 CTCF ZNF654 FOXA2 FOXA3 RAD21 SMC3 ZNF143 CUX1 FOXP1 ZBTB20-AS1 GC03P114421
GH03G114383 1 ENCODE dbSUPER 9 +32.7 32690 2.2 CTCF WRNIP1 BRCA1 ZBTB40 RAD21 RFX5 YY1 ZNF366 ZNF143 SMC3 ZBTB20-AS1 GC03P114421
GH03G114355 0.4 ENCODE 9.2 +4.6 4648 1.5 POU5F1 ZBTB20-AS1 GC03P114421
GH03G114312 0.6 dbSUPER 4.7 -35.7 -35655 6.5 GATA2 SCRT2 ZSCAN4 JUNB NFE2 CHD7 NFE2L2 ZBTB20-AS1 CFAP44-AS1 MIR568 TIGIT
GH03G114390 0.4 dbSUPER 5.1 +39.1 39084 1.8 RAD51 PRDM1 ZBTB20-AS1 GC03P114421
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZBTB20-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZBTB20-AS1 Gene

Chromosome:
3
Start:
114,351,811 bp from pter
End:
114,388,978 bp from pter
Size:
37,168 bases
Orientation:
Plus strand

Genomic View for ZBTB20-AS1 Gene

Genes around ZBTB20-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBTB20-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBTB20-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBTB20-AS1 Gene

Proteins for ZBTB20-AS1 Gene

Post-translational modifications for ZBTB20-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBTB20-AS1 Gene

Domains & Families for ZBTB20-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBTB20-AS1 Gene

Function for ZBTB20-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBTB20-AS1 Gene

Localization for ZBTB20-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZBTB20-AS1 Gene

Pathways & Interactions for ZBTB20-AS1 Gene

SuperPathways for ZBTB20-AS1 Gene

No Data Available

Interacting Proteins for ZBTB20-AS1 Gene

Gene Ontology (GO) - Biological Process for ZBTB20-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBTB20-AS1 Gene

Transcripts for ZBTB20-AS1 Gene

mRNA/cDNA for ZBTB20-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZBTB20-AS1 Gene

ZBTB20 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB20-AS1 Gene

No ASD Table

Relevant External Links for ZBTB20-AS1 Gene

GeneLoc Exon Structure for
ZBTB20-AS1
ECgene alternative splicing isoforms for
ZBTB20-AS1

Expression for ZBTB20-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZBTB20-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZBTB20-AS1 Gene

This gene is overexpressed in Testis (x45.3).

SOURCE GeneReport for Unigene cluster for ZBTB20-AS1 Gene:

Hs.745259
genes like me logo Genes that share expression patterns with ZBTB20-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBTB20-AS1 Gene

Orthologs for ZBTB20-AS1 Gene

Evolution for ZBTB20-AS1 Gene

ENSEMBL:
Gene Tree for ZBTB20-AS1 (if available)
TreeFam:
Gene Tree for ZBTB20-AS1 (if available)

No data available for Orthologs for ZBTB20-AS1 Gene

Paralogs for ZBTB20-AS1 Gene

No data available for Paralogs for ZBTB20-AS1 Gene

Variants for ZBTB20-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZBTB20-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1057519435 Pathogenic 114,350,292(-) TCAAG(C/T)ACATG intron-variant, upstream-variant-2KB, reference, missense
rs483353064 Pathogenic 114,350,310(-) CCGCC(A/C)AACAG intron-variant, upstream-variant-2KB, reference, missense
rs483353065 Pathogenic 114,350,307(-) CCAAA(C/G)AGAAC intron-variant, upstream-variant-2KB, reference, missense
rs483353066 Pathogenic 114,350,291(-) CAAGC(A/G)CATGT intron-variant, upstream-variant-2KB, reference, missense
rs483353067 Pathogenic 114,350,276(-) ACACA(C/T)AGGTG intron-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for ZBTB20-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv829679 CNV gain 17160897

Relevant External Links for ZBTB20-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBTB20-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZBTB20-AS1 Gene

Disorders for ZBTB20-AS1 Gene

Relevant External Links for ZBTB20-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZBTB20-AS1

No disorders were found for ZBTB20-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBTB20-AS1 Gene

Publications for ZBTB20-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for ZBTB20-AS1 Gene

Sources for ZBTB20-AS1 Gene

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