ZBTB16 Gene
protein-coding GIFtS : 65
GC11P113435
zinc finger and BTB domain containing 16 (Previous names: zinc finger protein 145 (Kruppel-like, expressed in promyelocytic leukemia) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: ZNF145 )
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Aliases & Descriptions for ZBTB16
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases PLZF 1 , 2 , 3 , 5 ZNF145 2 , 3 , 5
Descriptions Promyelocytic leukemia zinc finger protein 2 , 3 Zinc finger protein 145 3 Zinc finger protein PLZF 3 zinc finger and BTB domain containing 16 2 zinc finger protein 145 (Kruppel-like, expressed in promyelocytic leukemia) 1 , 2
Search outside databases for aliases for ZBTB16 gene
Summaries for ZBTB16 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ZBTB16 : This gene is a member of the Krueppel C2H2-type zinc-finger protein family and encodes a zincfinger transcription factor that contains nine Kruppel-type zinc finger domains at the carboxylterminus. This protein is located in the nucleus, is involved in cell cycle progression, andinteracts with a histone deacetylase. Specific instances of aberrant gene rearrangement at thislocus have been associated with acute promyelocytic leukemia (APL). Alternate transcriptionalsplice variants have been characterized. [provided by RefSeq] UniProtKB/Swiss-Prot: ZBT16_HUMAN, Q05516 Function : Probable transcription factor. May play a role in myeloid maturation and in thedevelopment and/or maintenance of other differentiated tissues. Probable substrate-recognitioncomponent of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination andsubsequent proteasomal degradation of target proteins
Gene Wiki entry for ZBTB16 (Zinc_finger_and_BTB_domain-containing_protein_16)
Genomic Location for ZBTB16
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ZBTB16 gene Entrez Gene cytogenetic band: 11q23.1 Ensembl cytogenetic band: 11q23.2 HGNC cytogenetic band: 11q23 ZBTB16 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P113435:
(about GC identifiers )
Start:
113,435,525 bp from pter
End:
113,626,608 bp from pter
Size:
191,084 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_033899.7 Proteins for ZBTB16
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ZBT16_HUMAN, Q05516 (See
protein sequence )Recommended Name: Zinc finger and BTB domain-containing protein 16 Size : 673 amino acids; 74274 Da
Subunit : Binds EPN1. Interacts with ZBTB32 and CUL3
Subcellular location : Nucleus
PDB structure from and Proteopedia : 1BUO (3D)
 1CS3 (3D)
 
Secondary accessions : Q8TAL4Alternative splicing : 2 isoforms : Q05516-1 Q05516-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001018011.1 NP_005997.2 ENSEMBL proteins: ENSP00000338157 ENSP00000376721 ENSP00000309507 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for ZBTB16: Assays for ZBTB16:
Protein
Domains/ Families for ZBTB16(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q05516 ProtoNet protein and cluster: Q05516
2 Blocks protein families : IPB000210 BTB/POZ domain IPB007086 C2H2-type zinc finger signature UniProtKB/Swiss-Prot: ZBT16_HUMAN, Q05516 Similarity : Belongs to the krueppel C2H2-type zinc-finger protein familySimilarity : Contains 1 BTB (POZ) domainSimilarity : Contains 9 C2H2-type zinc fingers
Gene Function for ZBTB16
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001018011 Applied Biosystems Silencer ® siRNAs for ZBTB16 Sigma-Aldrich siRNA and siRNA Panels for ZBTB16 Sigma-Aldrich shRNA Panels and shRNA for ZBTB16 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001018011                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001018011                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001018011  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006006 UniProtKB/Swiss-Prot: ZBT16_HUMAN, Q05516 Function : Probable transcription factor. May play a role in myeloid maturation and in thedevelopment and/or maintenance of other differentiated tissues. Probable substrate-recognitioncomponent of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination andsubsequent proteasomal degradation of target proteins Induction : By retinoic acid
4 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Zbtb16) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for ZBTB16
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for ZBTB16 (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: ZBT16_HUMAN, Q05516 Pathway : Protein modification; protein ubiquitination
Gene Network CentralTM Interacting Genes and Proteins Network for ZBTB16 5/60 Interacting proteins for ZBTB16 (Q05516 1 ENSP00000338157 3 ) via UniProtKB, MINT, and/or STRING (see all 60
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
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Drugs & Compounds for ZBTB16 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ZBTB16 3 Novoseek chemical compound relationships for ZBTB16 gene
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Transcripts for ZBTB16(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001018011 Sigma-Aldrich siRNA and siRNA Panels for ZBTB16 Sigma-Aldrich shRNA Panels and shRNA for ZBTB16 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001018011 NM_006006
REFSEQ mRNAs for ZBTB16 gene (2 alternative transcripts): NM_001018011.1 NM_006006.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001018011 NM_006006
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001018011                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001018011                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001018011  
Additional cDNA sequence: AK126422.1
9 DOTS entries : DT.95361449 DT.411134 DT.95200997 DT.92420387 DT.120730770 DT.99964205 DT.120730737 DT.92420386 DT.95073700
24/74 AceView cDNA sequences (see all 74
):BC026902 BX280946 BM969145 AW954317 BX955225 BQ943253 BU731767 BG820096 BQ185051 BQ184859 BM873474 CB990313 CD621505 AI198303 BM677752 BQ187781 CD518150 NM_006006 CB268674 BC029812 AW960240 AI933117 CB961332 BG914153
highest scoring ESTs for ZBTB16 :AA296152 AA468119 AA642184 AA845269 AI198303 AI832425 AI937150 AW960240 BC026902 BC029812
Unigene Clusters for ZBTB16: Zinc finger and BTB domain containing 16 Hs.591945 [show with all ESTs ] , Hs.682144 [show with all ESTs ] Unigene Representative Sequences: BX648973 , AK126422 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for ZBTB16 ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10a · 10b SP1 :       -   -           -   -           SP2 :         -           -   -           SP3 :                               SP4 :       -   -                       SP5 :       -                        
About this scheme ECgene alternative splicing isoforms for ZBTB16 3 Ensembl transcripts including schematic representations : ENST00000335953
ENST00000392996
ENST00000310883
Expression for ZBTB16
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ZBTB16 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ZBTB16 1 / 2 / 3
3 probe-sets matching ZBTB16 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTGGTTTTCASOURCE GeneReport for Unigene clusters: Hs.591945 Hs.682144 Expression variation in blood from EXPOLDB for ZBTB16
UniProtKB/Swiss-Prot: ZBT16_HUMAN, Q05516 Tissue specificity : Within the hematopoietic system, PLZF is expressed in bone marrow, earlymyeloid cell lines and peripheral blood mononuclear cells. Also expressed in the ovary, and atlower levels, in the kidney and lung
Orthologs for ZBTB16
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ZBTB16 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for ZBTB16 ENSEMBL Gene Tree for ZBTB16 Paralogs for ZBTB16 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ZBTB16 gene ZBTB39 2 ZBTB32 2
SNPs/Variants for ZBTB16 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ZBTB16 (up to first 250kb)
Disorders & Mutations for ZBTB16
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 176797 UniProtKB/Swiss-Prot: ZBT16_HUMAN, Q05516
Defects in ZBTB16 are the cause of skeletal defects genital hypoplasia and mentalretardation [MIM:612447]. The disorder is characterized by mental retardation, craniofacialdysmorphism, microcephaly and short stature. Additional features include absence of the thumbs,hypoplasia of the radii and ulnae, additional vertebrae and ribs, retarded bone age and genitalhypoplasia A chromosomal aberration involving ZBTB16 may be a cause of acute promyelocytic leukemia(APL). Translocation t(11;17)(q32;q21) with RARA
10 Novoseek disease relationships for ZBTB16 gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
leukemia promyelocytic acute
90.56
25
10023668 (1), 7849296 (1), 7892256 (1), 9341182 (1) (see all 23 )
promyelocytic leukemia
90.44
64
14527952 (3), 18953495 (2), 17118363 (2), 10980608 (2) (see all 35 )
leukemogenesis
66.32
3
8622986 (1), 17217037 (1)
leukemia
59.69
18
9591778 (2), 12970399 (2), 11090081 (1), 12802276 (1) (see all 13 )
fanconis anemia
38.29
2
11865059 (1), 17171645 (1)
acute leukemia
9.28
1
15467736 (1)
lymphoma non-hodgkins
8.87
2
10207085 (1), 11175338 (1)
cancer
0.00
3
12188922 (1), 18246121 (1), 17537403 (1)
tumors
0.00
7
10980608 (2), 18246121 (1), 16828757 (1)
prostate cancer
0.00
3
15065091 (2), 15334066 (1)
About this table Human Gene Mutation Database : ZBTB16 Genetic Association Database: ZBTB16 Human Genome Epidemiology Navigator: ZBTB16 (1 document)
Medical News for ZBTB16 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ZBTB16 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/142 PubMed articles for ZBTB16 gene (see all 142
): Genomic sequence, structural organization, molecular evolution, and aberrant rearrangement of promyelocytic leukemia zinc finger gene. (PubMed id 10500192) 1, 3, 4 Zhang T.... Chen S.-J. (1999) Rearrangements of the retinoic acid receptor alpha and promyelocytic leukemia zinc finger genes resulting from t(11;17)(q23;q21) in a patient with acute promyelocytic leukemia. (PubMed id 8387545) 1, 3, 4 Chen S.-J.... Chen Z. (1993) Fusion between a novel Kruppel-like zinc finger gene and the retinoic acid receptor-alpha locus due to a variant t(11;17) translocation associated with acute promyelocytic leukaemia. (PubMed id 8384553) 1, 3, 4 Chen Z.... Zelent A. (1993) Structure-function studies of the BTB/POZ transcriptional repression domain from the promyelocytic leukemia zinc finger oncoprotein. (PubMed id 10537309) 1, 3, 4 Li X....Marmorstein R. (1999) Biallelic loss of function of the promyelocytic leukaemia zinc finger (PLZF) gene causes severe skeletal defects and genital hypoplasia. (PubMed id 18611983) 3, 4 Fischer S....Wieczorek D. (2008) [Role of molecular screening for common fusion genes in the diagnosis and classification of leukemia] (PubMed id 15968309) 3, 6 Zhu Y.L....Liu J. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Role of the ENTH domain in phosphatidylinositol-4,5-bisphosphate binding and endocytosis. (PubMed id 11161217) 3, 4 Itoh T.... Takenawa T. (2001) A novel BTB/POZ transcriptional repressor protein interacts with the Fanconi anemia group C protein and PLZF. (PubMed id 10572087) 3, 4 Hoatlin M.E.... Licht J.D. (1999) Crystal structure of the BTB domain from PLZF. (PubMed id 9770450) 3, 4 Ahmad K.F.... Prive G.G. (1998)
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Genome Databases showing ZBTB16
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ZBTB16
(According to HUGE )
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Specialized Databases showing ZBTB16 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ZBTB16 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ZBTB16:
Recombinant Proteins (Plzf ) Antibodies (Plzf )
Search Tocris compounds for ZBTB16
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Aliases for ZBTB16
Databases for ZBTB16
Disorders for ZBTB16
Domains/Families for ZBTB16
Drugs/Compounds for ZBTB16
Expression for ZBTB16
Function for ZBTB16
Location for ZBTB16
Medical News for ZBTB16
Orthologs for ZBTB16
Paralogs for ZBTB16
Pathways/Interactions for ZBTB16
Proteins for ZBTB16
Publications for ZBTB16
SNPs for ZBTB16
Search Box for ZBTB16
Services for ZBTB16
Summaries for ZBTB16
Technologies for ZBTB16
Transcripts for ZBTB16
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009