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Aliases for ZBED9 Gene

Aliases for ZBED9 Gene

  • Zinc Finger, BED-Type Containing 9 2 3
  • Buster4 3 4 6
  • SCAND3 3 4 6
  • Transposon-Derived Buster4 Transposase-Like Protein 3 4
  • Zinc Finger BED Domain-Containing Protein 9 3 4
  • Zinc Finger Protein 305 Pseudogene 2 2 3
  • SCAN Domain Containing 3 2 3
  • Zinc Finger Protein 452 2 3
  • ZNF305P2 3 4
  • KIAA1925 4 6
  • ZNF452 3 4
  • DJ1186N24.3 (Novel Zinc Finger Protein) 3
  • SCAN Domain-Containing Protein 3 3
  • DJ1186N24.3 3
  • ZFP38-L 3

External Ids for ZBED9 Gene

Previous HGNC Symbols for ZBED9 Gene

  • ZNF305P2
  • ZNF452
  • SCAND3

Summaries for ZBED9 Gene

GeneCards Summary for ZBED9 Gene

ZBED9 (Zinc Finger, BED-Type Containing 9) is a Protein Coding gene. An important paralog of this gene is FAM200B.

Gene Wiki entry for ZBED9 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED9 Gene

Genomics for ZBED9 Gene

Genomic Location for ZBED9 Gene

Start:
28,571,630 bp from pter
End:
28,616,212 bp from pter
Size:
44,583 bases
Orientation:
Minus strand

Genomic View for ZBED9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZBED9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED9 Gene

No data available for Regulatory Elements for ZBED9 Gene

Proteins for ZBED9 Gene

  • Protein details for ZBED9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6R2W3-SCND3_HUMAN
    Recommended name:
    SCAN domain-containing protein 3
    Protein Accession:
    Q6R2W3
    Secondary Accessions:
    • Q2NKL9
    • Q5SRJ3
    • Q8TCN2
    • Q96MV9
    • Q96PW3

    Protein attributes for ZBED9 Gene

    Size:
    1325 amino acids
    Molecular mass:
    151666 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZBED9 Gene

Proteomics data for ZBED9 Gene at MOPED

Post-translational modifications for ZBED9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZBED9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZBED9 Gene

Domains for ZBED9 Gene

Gene Families for ZBED9 Gene

HGNC:
  • ZBED :Zinc fingers, BED-type

Graphical View of Domain Structure for InterPro Entry

Q6R2W3

UniProtKB/Swiss-Prot:

SCND3_HUMAN :
  • Q6R2W3
Domain:
  • Contains 1 integrase catalytic domain.
  • Contains 1 SCAN box domain.
genes like me logo Genes that share domains with ZBED9: view

No data available for Suggested Antigen Peptide Sequences for ZBED9 Gene

Function for ZBED9 Gene

Gene Ontology (GO) - Molecular Function for ZBED9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0046983 protein dimerization activity IEA --
genes like me logo Genes that share ontologies with ZBED9: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZBED9 Gene

Localization for ZBED9 Gene

Gene Ontology (GO) - Cellular Components for ZBED9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZBED9: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for ZBED9 Gene

Pathways for ZBED9 Gene

SuperPathways for ZBED9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZBED9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0015074 DNA integration IEA --
genes like me logo Genes that share ontologies with ZBED9: view

No data available for Pathways by source for ZBED9 Gene

Transcripts for ZBED9 Gene

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZBED9

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED9 Gene

No ASD Table

Relevant External Links for ZBED9 Gene

GeneLoc Exon Structure for
ZBED9
ECgene alternative splicing isoforms for
ZBED9

Expression for ZBED9 Gene

mRNA expression in normal human tissues for ZBED9 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZBED9 Gene

genes like me logo Genes that share expressions with ZBED9: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZBED9 Gene

Orthologs for ZBED9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZBED9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCAND3 35
  • 99.57 (n)
  • 99.47 (a)
SCAND3 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCAND3 35
  • 86.26 (n)
  • 84.75 (a)
SCAND3 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2410018M08Rik 36
  • 32 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 32 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101733657 35
  • 51.36 (n)
  • 42.71 (a)
zebrafish
(Danio rerio)
Actinopterygii BX664605.1 36
  • 34 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 27 (a)
ManyToMany
Species with no ortholog for ZBED9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZBED9 Gene

ENSEMBL:
Gene Tree for ZBED9 (if available)
TreeFam:
Gene Tree for ZBED9 (if available)

Paralogs for ZBED9 Gene

Paralogs for ZBED9 Gene

genes like me logo Genes that share paralogs with ZBED9: view

Variants for ZBED9 Gene

Sequence variations from dbSNP and Humsavar for ZBED9 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs370520 -- 28,574,743(+) TTCCT(C/T)TTCAT synonymous-codon, reference
rs397708 -- 28,589,374(+) CCTTG(C/T)GGTTg upstream-variant-2KB
rs408255 -- 28,579,099(+) TTATC(C/T)GACTG intron-variant
rs409029 -- 28,579,377(+) GATCA(C/T)TTCTT reference, missense
rs411538 -- 28,587,673(+) TTCCT(C/T)GTTAA upstream-variant-2KB

Relevant External Links for ZBED9 Gene

HapMap Linkage Disequilibrium report
ZBED9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZBED9 Gene

Disorders for ZBED9 Gene

No disorders were found for ZBED9 Gene.

No data available for UniProtKB/Swiss-Prot for ZBED9 Gene

Publications for ZBED9 Gene

  1. ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions. (PMID: 23533661) Hayward A. … Jern P. (PLoS ONE 2013) 2 3 4
  2. On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain. (PMID: 23550032) Llorens C. … Moya A. (Mob Genet Elements 2012) 2 3
  3. Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. (PMID: 11572484) Nagase T. … Ohara O. (DNA Res. 2001) 3 4
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4

Products for ZBED9 Gene

Sources for ZBED9 Gene

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