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Aliases for ZBED8 Gene

Aliases for ZBED8 Gene

  • Zinc Finger, BED-Type Containing 8 2 3
  • C5orf54 3 4 6
  • Buster3 3 4 6
  • Transposon-Derived Buster3 Transposase-Like Protein 3 4
  • Zinc Finger BED Domain-Containing Protein 8 3 4
  • Chromosome 5 Open Reading Frame 54 2
  • Protein ZBED8 3

External Ids for ZBED8 Gene

Previous HGNC Symbols for ZBED8 Gene

  • C5orf54

Summaries for ZBED8 Gene

GeneCards Summary for ZBED8 Gene

ZBED8 (Zinc Finger, BED-Type Containing 8) is a Protein Coding gene. An important paralog of this gene is FAM200B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED8 Gene

Genomics for ZBED8 Gene

Genomic Location for ZBED8 Gene

160,393,148 bp from pter
160,400,097 bp from pter
6,950 bases
Minus strand

Genomic View for ZBED8 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZBED8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED8 Gene

No data available for Regulatory Elements for ZBED8 Gene

Proteins for ZBED8 Gene

  • Protein details for ZBED8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein ZBED8
    Protein Accession:
    Secondary Accessions:
    • D3DQJ9
    • Q9H5S8
    • Q9UH87

    Protein attributes for ZBED8 Gene

    594 amino acids
    Molecular mass:
    68327 Da
    Quaternary structure:
    No Data Available
    • May be derived from an ancient transposon that has lost its ability to translocate. Exhibits a close evolutionary relationship with ZBED5, but does not contain any zinc finger

neXtProt entry for ZBED8 Gene

Proteomics data for ZBED8 Gene at MOPED

Post-translational modifications for ZBED8 Gene

  • Ubiquitination at Lys574
  • Modification sites at PhosphoSitePlus

Other Protein References for ZBED8 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZBED8 Gene

Domains for ZBED8 Gene

Gene Families for ZBED8 Gene

  • ZBED :Zinc fingers, BED-type

Protein Domains for ZBED8 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZBED8: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBED8 Gene

Function for ZBED8 Gene

Gene Ontology (GO) - Molecular Function for ZBED8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with ZBED8: view

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZBED8

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZBED8 Gene

Localization for ZBED8 Gene

Gene Ontology (GO) - Cellular Components for ZBED8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with ZBED8: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for ZBED8 Gene

Pathways for ZBED8 Gene

SuperPathways for ZBED8 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZBED8 Gene


No data available for Pathways by source for ZBED8 Gene

Transcripts for ZBED8 Gene

mRNA/cDNA for ZBED8 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZBED8

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED8 Gene

No ASD Table

Relevant External Links for ZBED8 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZBED8 Gene

mRNA expression in normal human tissues for ZBED8 Gene

Protein differential expression in normal tissues for ZBED8 Gene

This gene is overexpressed in Ovary (45.0) and Heart (23.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZBED8 Gene

genes like me logo Genes that share expressions with ZBED8: view

Expression partners for ZBED8 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZBED8 Gene

Orthologs for ZBED8 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZBED8 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia ZBED8 35
  • 91.25 (n)
  • 92.93 (a)
ZBED8 36
  • 93 (a)
(Canis familiaris)
Mammalia C4H5orf54 35
  • 92.93 (n)
  • 94.78 (a)
C5orf54 36
  • 95 (a)
(Pan troglodytes)
Mammalia C5H5orf54 35
  • 99.38 (n)
  • 99.66 (a)
C5orf54 36
  • 100 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 29 (a)
(Danio rerio)
Actinopterygii BX664605.1 36
  • 31 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 26 (a)
Species with no ortholog for ZBED8:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZBED8 Gene

Gene Tree for ZBED8 (if available)
Gene Tree for ZBED8 (if available)

Paralogs for ZBED8 Gene

Paralogs for ZBED8 Gene

Selected SIMAP similar genes for ZBED8 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZBED8: view

Variants for ZBED8 Gene

Sequence variations from dbSNP and Humsavar for ZBED8 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs1075059 -- 160,398,791(+) TGCGC(G/T)TTTGT intron-variant
rs1075060 -- 160,399,072(+) GGGTA(C/T)ACATC intron-variant
rs1133835 -- 160,393,479(-) CTAAG(C/T)ATCTG utr-variant-3-prime, downstream-variant-500B
rs1133836 -- 160,393,314(-) ATGGA(A/G)AGGTT utr-variant-3-prime, downstream-variant-500B
rs2910177 -- 160,396,092(+) TCCGT(C/T)ACCCA intron-variant

Relevant External Links for ZBED8 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZBED8 Gene

Disorders for ZBED8 Gene

No disorders were found for ZBED8 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ZBED8 Gene

Publications for ZBED8 Gene

  1. Interspersed repeats and other mementos of transposable elements in mammalian genomes. (PMID: 10607616) Smit A.F.A. (Curr. Opin. Genet. Dev. 1999) 2 3 4
  2. ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions. (PMID: 23533661) Hayward A. … Jern P. (PLoS ONE 2013) 2 3 4
  3. Weight loss after gastric bypass is associated with a variant at 15q26.1. (PMID: 23643386) Hatoum I.J. … Kaplan L.M. (Am. J. Hum. Genet. 2013) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for ZBED8 Gene

Sources for ZBED8 Gene

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