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Aliases for ZBED6CL Gene

Aliases for ZBED6CL Gene

  • ZBED6 C-Terminal Like 2 3 5
  • C7orf29 3 4
  • Chromosome 7 Open Reading Frame 29 2
  • ZBED6 C-Terminal-Like Protein 3

External Ids for ZBED6CL Gene

Previous HGNC Symbols for ZBED6CL Gene

  • C7orf29

Previous GeneCards Identifiers for ZBED6CL Gene

  • GC07P150027

Summaries for ZBED6CL Gene

GeneCards Summary for ZBED6CL Gene

ZBED6CL (ZBED6 C-Terminal Like) is a Protein Coding gene.

Additional gene information for ZBED6CL Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED6CL Gene

Genomics for ZBED6CL Gene

GeneHancer (GH) Regulatory Elements for ZBED6CL Gene

Promoters and enhancers for ZBED6CL Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I150328 Promoter/Enhancer 0.9 EPDnew ENCODE 550.8 +0.1 82 2.2 ZNF143 SIN3A CTBP2 ZBED6CL GC07P150330 LRRC61 REPIN1
GH07I150375 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 8.7 +51.3 51279 11.7 HDGF PKNOX1 FOXA2 SMAD1 ARID4B SIN3A DMAP1 IRF4 YY1 POLR2B ENSG00000284048 ZNF775 NUB1 REPIN1 ZNF777 ZNF767P ZNF862 ENSG00000244151 ZBED6CL TMEM176A
GH07I150356 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.3 +28.4 28424 3.6 HDGF ARNT YBX1 ZNF2 ZNF766 ZNF302 ZNF143 FOS ZNF263 MCM5 GC07P150358 NUB1 ENSG00000244151 ZNF767P REPIN1 ZNF777 ABCB8 ZNF775 LOC105375564 ZBED6CL
GH07I150398 Promoter/Enhancer 2 Ensembl ENCODE dbSUPER 7.2 +74.4 74376 11.2 MLX FEZF1 DMAP1 IRF4 YY1 E2F8 ZNF143 SP3 ZNF610 GLIS1 LOC728743 ZNF775 ENSG00000244151 NUB1 LRRC61 ZNF777 REPIN1 ZNF767P LOC105375564 ACTR3C
GH07I150354 Enhancer 1.3 Ensembl ENCODE dbSUPER 5.6 +25.6 25645 1.1 HDGF PKNOX1 ATF1 FOXA2 ARID4B YY1 ZNF766 ATF7 RXRA CAVIN1 GC07P150358 REPIN1 ZNF775 LOC105375564 ZBED6CL GC07P150352
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZBED6CL on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZBED6CL Gene

Genomic Locations for ZBED6CL Gene
2,933 bases
Plus strand

Genomic View for ZBED6CL Gene

Genes around ZBED6CL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBED6CL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBED6CL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED6CL Gene

Proteins for ZBED6CL Gene

  • Protein details for ZBED6CL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    ZBED6 C-terminal-like protein
    Protein Accession:

    Protein attributes for ZBED6CL Gene

    236 amino acids
    Molecular mass:
    26352 Da
    Quaternary structure:
    No Data Available
    • Similar to the C-terminus of ZBED6, but lacks BED domains, and therefore is probably not involved in transcriptional regulation. Encoded by a DNA transposon located in the 5-untranslated region (5-UTR) of LLRC61.

neXtProt entry for ZBED6CL Gene

Post-translational modifications for ZBED6CL Gene

No Post-translational modifications

Other Protein References for ZBED6CL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZBED6CL Gene

Domains & Families for ZBED6CL Gene

Gene Families for ZBED6CL Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ZBED6CL Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZBED6CL: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBED6CL Gene

Function for ZBED6CL Gene

genes like me logo Genes that share phenotypes with ZBED6CL: view

Animal Model Products

CRISPR Products

miRNA for ZBED6CL Gene

miRTarBase miRNAs that target ZBED6CL

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZBED6CL Gene

Localization for ZBED6CL Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZBED6CL gene
Compartment Confidence
mitochondrion 3
nucleus 2
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear membrane (2)
  • Vesicles (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ZBED6CL Gene

Pathways & Interactions for ZBED6CL Gene

SuperPathways for ZBED6CL Gene

No Data Available

Interacting Proteins for ZBED6CL Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
Selected Interacting proteins: ENSP00000343242 Q96FA7-ZB6CL_HUMAN for ZBED6CL Gene via STRING IID

Gene Ontology (GO) - Biological Process for ZBED6CL Gene


No data available for Pathways by source and SIGNOR curated interactions for ZBED6CL Gene

Drugs & Compounds for ZBED6CL Gene

No Compound Related Data Available

Transcripts for ZBED6CL Gene

mRNA/cDNA for ZBED6CL Gene

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED6CL Gene

No ASD Table

Relevant External Links for ZBED6CL Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZBED6CL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZBED6CL Gene

mRNA differential expression in normal tissues according to GTEx for ZBED6CL Gene

This gene is overexpressed in Adrenal Gland (x21.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZBED6CL Gene

Protein tissue co-expression partners for ZBED6CL Gene

NURSA nuclear receptor signaling pathways regulating expression of ZBED6CL Gene:

genes like me logo Genes that share expression patterns with ZBED6CL: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBED6CL Gene

Orthologs for ZBED6CL Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZBED6CL Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ZBED6CL 33
  • 99.01 (n)
(Bos Taurus)
Mammalia C4H7orf29 33
  • 72.73 (n)
(Ornithorhynchus anatinus)
Mammalia ZBED6CL 34
  • 57 (a)
Species where no ortholog for ZBED6CL was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZBED6CL Gene

Gene Tree for ZBED6CL (if available)
Gene Tree for ZBED6CL (if available)

Paralogs for ZBED6CL Gene

No data available for Paralogs for ZBED6CL Gene

Variants for ZBED6CL Gene

Sequence variations from dbSNP and Humsavar for ZBED6CL Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000076312 -- 150,330,182(+) C/T 5_prime_UTR_variant
rs1001181158 -- 150,333,082(+) G/T downstream_transcript_variant
rs1001529068 -- 150,328,858(+) G/A upstream_transcript_variant
rs1001749736 -- 150,329,086(+) G/T upstream_transcript_variant
rs1002134447 -- 150,328,181(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ZBED6CL Gene

Variant ID Type Subtype PubMed ID
dgv3695n106 OTHER inversion 24896259
dgv435n21 CNV loss 19592680
nsv1015582 CNV gain 25217958
nsv1034409 CNV gain 25217958
nsv1067934 OTHER inversion 25765185
nsv1151906 OTHER inversion 26484159
nsv508490 CNV deletion 20534489
nsv521407 CNV loss 19592680
nsv608990 CNV gain 21841781
nsv951645 CNV deletion 24416366

Variation tolerance for ZBED6CL Gene

Residual Variation Intolerance Score: 67.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.99; 68.33% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ZBED6CL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZBED6CL Gene

Disorders for ZBED6CL Gene

Additional Disease Information for ZBED6CL

No disorders were found for ZBED6CL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBED6CL Gene

Publications for ZBED6CL Gene

  1. ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions. (PMID: 23533661) Hayward A … Jern P (PloS one 2013) 2 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 4 58
  4. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J … Yang X (Molecular systems biology 2011) 3 58
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 58

Products for ZBED6CL Gene

Sources for ZBED6CL Gene

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