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Aliases for ZBED5-AS1 Gene

Subcategory (RNA class) for ZBED5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ZBED5-AS1 Gene

  • ZBED5 Antisense RNA 1 2 3 5
  • CTD-2003C8.1 3

External Ids for ZBED5-AS1 Gene

Summaries for ZBED5-AS1 Gene

GeneCards Summary for ZBED5-AS1 Gene

ZBED5-AS1 (ZBED5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZBED5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED5-AS1 Gene

Genomics for ZBED5-AS1 Gene

Regulatory Elements for ZBED5-AS1 Gene

Enhancers for ZBED5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H010897 2 FANTOM5 Ensembl ENCODE dbSUPER 21.4 +42.4 42368 5.3 PKNOX1 FOXA2 ARNT SIN3A FEZF1 ZNF2 ZNF766 FOS DEK REST ZBED5-AS1 ZBED5 CTR9 EIF4G2 ENSG00000255125 AMPD3 SNORD97 ENSG00000250041 RNF141 LOC105376550
GH11H010855 1.4 ENCODE dbSUPER 23 0.0 -25 4.4 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 ZBED5-AS1 LOC101928053 CTR9 EIF4G2 SNORD97 ZBED5 LOC105376547
GH11H010892 1.3 Ensembl ENCODE dbSUPER 19.4 +36.0 35993 2.9 CTCF ZBTB21 TAL1 MAX SIN3A RAD21 TEAD3 TCF12 NCOR1 PRDM10 ZBED5-AS1 ZBED5 ENSG00000250041
GH11H010906 1.2 Ensembl ENCODE dbSUPER 20.9 +49.7 49718 3.6 CTCF PKNOX1 CAVIN1 L3MBTL2 MAX RAD21 RFX5 NFIC GATA3 IKZF1 ZBED5-AS1 ENSG00000250041 LOC105376550
GH11H010805 1.4 ENCODE dbSUPER 17.6 -50.4 -50364 5.2 HNRNPUL1 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZBED5 CTR9 EIF4G2 ZBED5-AS1 LOC101928053 ENSG00000255125 GC11M010801 SNORD97
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZBED5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZBED5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000036820 -117 3401 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766

Genomic Locations for ZBED5-AS1 Gene

Genomic Locations for ZBED5-AS1 Gene
48,586 bases
Plus strand

Genomic View for ZBED5-AS1 Gene

Genes around ZBED5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBED5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBED5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED5-AS1 Gene

Proteins for ZBED5-AS1 Gene

Post-translational modifications for ZBED5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBED5-AS1 Gene

Domains & Families for ZBED5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBED5-AS1 Gene

Function for ZBED5-AS1 Gene

Phenotypes for ZBED5-AS1 Gene

GenomeRNAi human phenotypes for ZBED5-AS1:
genes like me logo Genes that share phenotypes with ZBED5-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBED5-AS1 Gene

Localization for ZBED5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZBED5-AS1 Gene

Pathways & Interactions for ZBED5-AS1 Gene

SuperPathways for ZBED5-AS1 Gene

No Data Available

Interacting Proteins for ZBED5-AS1 Gene

Gene Ontology (GO) - Biological Process for ZBED5-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ZBED5-AS1 Gene

Drugs & Compounds for ZBED5-AS1 Gene

No Compound Related Data Available

Transcripts for ZBED5-AS1 Gene

mRNA/cDNA for ZBED5-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED5-AS1 Gene

No ASD Table

Relevant External Links for ZBED5-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZBED5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZBED5-AS1 Gene

genes like me logo Genes that share expression patterns with ZBED5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBED5-AS1 Gene

Orthologs for ZBED5-AS1 Gene

Evolution for ZBED5-AS1 Gene

Gene Tree for ZBED5-AS1 (if available)
Gene Tree for ZBED5-AS1 (if available)

No data available for Orthologs for ZBED5-AS1 Gene

Paralogs for ZBED5-AS1 Gene

No data available for Paralogs for ZBED5-AS1 Gene

Variants for ZBED5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZBED5-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000000576 -- 10,875,125(+) CATCT(A/G)TTGAT intron-variant
rs1000301071 -- 10,875,475(+) CTCAA(A/T)GTGAC intron-variant
rs1000343947 -- 10,863,616(+) AGTGA(A/G)ACTCC intron-variant
rs1000346774 -- 10,863,880(+) TTGGG(C/T)CCCAA intron-variant
rs1000595629 -- 10,858,274(+) GGAGC(C/G)GCTGG nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZBED5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv483000 CNV loss 15286789
esv3625365 CNV loss 21293372

Relevant External Links for ZBED5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZBED5-AS1 Gene

Disorders for ZBED5-AS1 Gene

Relevant External Links for ZBED5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ZBED5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBED5-AS1 Gene

Publications for ZBED5-AS1 Gene

No publications were found for ZBED5-AS1 Gene.

Products for ZBED5-AS1 Gene

Sources for ZBED5-AS1 Gene

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