Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZBED5-AS1 Gene

Subcategory (RNA class) for ZBED5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZBED5-AS1 Gene

  • ZBED5 Antisense RNA 1 2 3 5
  • CTD-2003C8.1 3

External Ids for ZBED5-AS1 Gene

Summaries for ZBED5-AS1 Gene

GeneCards Summary for ZBED5-AS1 Gene

ZBED5-AS1 (ZBED5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED5-AS1 Gene

Genomics for ZBED5-AS1 Gene

Regulatory Elements for ZBED5-AS1 Gene

Enhancers for ZBED5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F010897 1.5 FANTOM5 ENCODE 18.5 +42.0 42015 4.6 PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 FOS JUNB REST SMARCB1 ZBED5 ZBED5-AS1 CTR9 EIF4G2 ENSG00000255125 AMPD3 SNORD97 ENSG00000250041 LOC105376550
GH11F010878 1.3 Ensembl ENCODE 19.9 +20.6 20621 1.1 PKNOX1 ARNT CREB3L1 SIN3A FEZF1 ZNF2 ZNF766 FOS DEK REST ZBED5-AS1 EIF4G2 SNORD97 ENSG00000250041 ZBED5
GH11F010855 1.1 ENCODE 23 0.0 -25 4.4 PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZBED5-AS1 LOC101928053 EIF4G2 SNORD97 ZBED5 LOC105376547
GH11F010892 1.3 FANTOM5 Ensembl ENCODE 19.4 +35.8 35789 3.3 CTCF TAL1 MAX SIN3A RAD21 TEAD3 ZNF316 NCOR1 PRDM10 TRIM24 ZBED5-AS1 ZBED5 AMPD3 ENSG00000250041
GH11F010906 1.2 Ensembl ENCODE 20.8 +49.7 49740 3.7 INSM2 KLF17 SIN3A FEZF1 RAD21 YY1 RFX5 ZNF335 GLIS2 CREM ZBED5-AS1 ZBED5 CTR9 ENSG00000250041 LOC105376550
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZBED5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZBED5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000558413 -216 4000 PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for ZBED5-AS1 Gene

Chromosome:
11
Start:
10,858,217 bp from pter
End:
10,906,802 bp from pter
Size:
48,586 bases
Orientation:
Plus strand

Genomic View for ZBED5-AS1 Gene

Genes around ZBED5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBED5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBED5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED5-AS1 Gene

Proteins for ZBED5-AS1 Gene

Post-translational modifications for ZBED5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBED5-AS1 Gene

Domains & Families for ZBED5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBED5-AS1 Gene

Function for ZBED5-AS1 Gene

Phenotypes for ZBED5-AS1 Gene

GenomeRNAi human phenotypes for ZBED5-AS1:
genes like me logo Genes that share phenotypes with ZBED5-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBED5-AS1 Gene

Localization for ZBED5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZBED5-AS1 Gene

Pathways & Interactions for ZBED5-AS1 Gene

SuperPathways for ZBED5-AS1 Gene

No Data Available

Interacting Proteins for ZBED5-AS1 Gene

Gene Ontology (GO) - Biological Process for ZBED5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBED5-AS1 Gene

Transcripts for ZBED5-AS1 Gene

mRNA/cDNA for ZBED5-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED5-AS1 Gene

No ASD Table

Relevant External Links for ZBED5-AS1 Gene

GeneLoc Exon Structure for
ZBED5-AS1
ECgene alternative splicing isoforms for
ZBED5-AS1

Expression for ZBED5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZBED5-AS1 Gene

genes like me logo Genes that share expression patterns with ZBED5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZBED5-AS1 Gene

Orthologs for ZBED5-AS1 Gene

Evolution for ZBED5-AS1 Gene

ENSEMBL:
Gene Tree for ZBED5-AS1 (if available)
TreeFam:
Gene Tree for ZBED5-AS1 (if available)

No data available for Orthologs for ZBED5-AS1 Gene

Paralogs for ZBED5-AS1 Gene

No data available for Paralogs for ZBED5-AS1 Gene

Variants for ZBED5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZBED5-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1047110 -- 10,878,610(+) caggc(A/G)taaac nc-transcript-variant
rs10770148 -- 10,870,690(+) TTTAT(G/T)CCTAG intron-variant
rs10770149 -- 10,877,869(+) CTGAC(A/G)TTCTT intron-variant
rs10840503 -- 10,867,796(+) CTTGT(A/G)CATTT intron-variant
rs11042986 -- 10,863,698(+) ACTCA(C/G)AAAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZBED5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv483000 CNV loss 15286789
esv3625365 CNV loss 21293372

Relevant External Links for ZBED5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBED5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZBED5-AS1 Gene

Disorders for ZBED5-AS1 Gene

Relevant External Links for ZBED5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZBED5-AS1

No disorders were found for ZBED5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBED5-AS1 Gene

Publications for ZBED5-AS1 Gene

No publications were found for ZBED5-AS1 Gene.

Products for ZBED5-AS1 Gene

Sources for ZBED5-AS1 Gene

Content
Loading form....