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Aliases for ZBED3-AS1 Gene

Subcategory (RNA class) for ZBED3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZBED3-AS1 Gene

  • ZBED3 Antisense RNA 1 2 3 5
  • ZBED3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTC-564N23.3 3

External Ids for ZBED3-AS1 Gene

Previous GeneCards Identifiers for ZBED3-AS1 Gene

  • GC05P076384

Summaries for ZBED3-AS1 Gene

GeneCards Summary for ZBED3-AS1 Gene

ZBED3-AS1 (ZBED3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED3-AS1 Gene

Genomics for ZBED3-AS1 Gene

Regulatory Elements for ZBED3-AS1 Gene

Enhancers for ZBED3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G077231 1.4 FANTOM5 Ensembl ENCODE 10.5 +144.9 144857 0.9 HDAC1 CTCF ESRRA TAL1 JUN FOSL1 HIC1 GATA3 ZNF766 GATA2 ZBED3-AS1 S100Z GC05M077218 GC05M077268
GH05G077029 1.1 ENCODE 10.6 -56.1 -56069 2.5 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ENSG00000250615 SNORA47 ZBED3-AS1 CRHBP AGGF1
GH05G076868 0.8 Ensembl 10.3 -218.6 -218639 0.2 CTCF PKNOX1 ZNF76 RAD21 RFX5 POLR3A SCRT2 ZNF143 SMC3 FOS CRHBP ZBED3-AS1 SNORA47 F2R ENSG00000225407 S100Z PIR54977
GH05G076869 0.7 ENCODE 10.3 -218.5 -218450 0.2 CTCF PKNOX1 ZNF76 RAD21 RFX5 SCRT2 ZNF143 SMC3 DEK ZNF654 CRHBP ZBED3-AS1 SNORA47 ENSG00000225407 F2R S100Z PIR54977
GH05G077144 0.7 ENCODE 10.2 +58.0 57971 0.2 CTCF ZNF654 ZNF10 TRIM22 REST ZNF2 RAD21 YY1 SMC3 ZNF143 PDE8B ZBED3-AS1 LOC100422441 HMGB1P35 ZBED3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZBED3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZBED3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000182830 102 1401 ARID4B SIN3A DMAP1 ZNF2 ZNF48 SLC30A9 GLIS2 ZNF143 ZNF207 KLF7

Genomic Location for ZBED3-AS1 Gene

Chromosome:
5
Start:
77,086,740 bp from pter
End:
77,166,909 bp from pter
Size:
80,170 bases
Orientation:
Plus strand

Genomic View for ZBED3-AS1 Gene

Genes around ZBED3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBED3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBED3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED3-AS1 Gene

Proteins for ZBED3-AS1 Gene

Post-translational modifications for ZBED3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBED3-AS1 Gene

Domains & Families for ZBED3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBED3-AS1 Gene

Function for ZBED3-AS1 Gene

Phenotypes for ZBED3-AS1 Gene

GenomeRNAi human phenotypes for ZBED3-AS1:
genes like me logo Genes that share phenotypes with ZBED3-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBED3-AS1 Gene

Localization for ZBED3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZBED3-AS1 Gene

Pathways & Interactions for ZBED3-AS1 Gene

SuperPathways for ZBED3-AS1 Gene

No Data Available

Interacting Proteins for ZBED3-AS1 Gene

Gene Ontology (GO) - Biological Process for ZBED3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBED3-AS1 Gene

Transcripts for ZBED3-AS1 Gene

mRNA/cDNA for ZBED3-AS1 Gene

(4) Additional mRNA sequences :
(17) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZBED3-AS1 Gene

ZBED3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED3-AS1 Gene

No ASD Table

Relevant External Links for ZBED3-AS1 Gene

GeneLoc Exon Structure for
ZBED3-AS1
ECgene alternative splicing isoforms for
ZBED3-AS1

Expression for ZBED3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZBED3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZBED3-AS1 Gene

This gene is overexpressed in Adipose - Visceral (Omentum) (x4.3).

SOURCE GeneReport for Unigene cluster for ZBED3-AS1 Gene:

Hs.161338
genes like me logo Genes that share expression patterns with ZBED3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZBED3-AS1 Gene

Orthologs for ZBED3-AS1 Gene

Evolution for ZBED3-AS1 Gene

ENSEMBL:
Gene Tree for ZBED3-AS1 (if available)
TreeFam:
Gene Tree for ZBED3-AS1 (if available)

No data available for Orthologs for ZBED3-AS1 Gene

Paralogs for ZBED3-AS1 Gene

No data available for Paralogs for ZBED3-AS1 Gene

Variants for ZBED3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZBED3-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000012395 -- 77,118,831(+) TTGCC(C/T)TTTTC intron-variant
rs1000063273 -- 77,118,640(+) ACAAT(A/G)GGGAG intron-variant
rs1000135858 -- 77,088,635(+) TTCTC(-/T)TAACT intron-variant, upstream-variant-2KB
rs1000175169 -- 77,094,718(+) GCTTC(C/T)GGTGA intron-variant
rs1000188611 -- 77,088,903(+) TACCC(A/G)GTAGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZBED3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2730326 CNV deletion 23290073
esv2730327 CNV deletion 23290073
esv3307010 CNV mobile element insertion 20981092
esv3349246 CNV insertion 20981092
esv3430649 CNV insertion 20981092
esv3605480 CNV loss 21293372
nsv1027236 CNV gain 25217958
nsv469515 CNV loss 16826518
nsv4886 CNV insertion 18451855
nsv4887 CNV insertion 18451855
nsv823102 CNV gain 20364138
nsv980687 CNV duplication 23825009

Relevant External Links for ZBED3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBED3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZBED3-AS1 Gene

Disorders for ZBED3-AS1 Gene

Relevant External Links for ZBED3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZBED3-AS1

No disorders were found for ZBED3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBED3-AS1 Gene

Publications for ZBED3-AS1 Gene

  1. Long noncoding RNAs expression signatures in chondrogenic differentiation of human bone marrow mesenchymal stem cells. (PMID: 25482444) Wang L. … Wang Y. (Biochem. Biophys. Res. Commun. 2015) 2 3 64
  2. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight B.F. … . (Nat. Genet. 2010) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZBED3-AS1 Gene

Sources for ZBED3-AS1 Gene

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