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Aliases for ZBED3-AS1 Gene

Subcategory (RNA class) for ZBED3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZBED3-AS1 Gene

  • ZBED3 Antisense RNA 1 2 3 5
  • ZBED3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTC-564N23.3 3

External Ids for ZBED3-AS1 Gene

Previous GeneCards Identifiers for ZBED3-AS1 Gene

  • GC05P076384

Summaries for ZBED3-AS1 Gene

GeneCards Summary for ZBED3-AS1 Gene

ZBED3-AS1 (ZBED3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED3-AS1 Gene

Genomics for ZBED3-AS1 Gene

Regulatory Elements for ZBED3-AS1 Gene

Enhancers for ZBED3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F077180 0.2 Ensembl 10.7 +94.0 94026 1.4 MXI1 PKNOX1 SUZ12 MAX E2F1 POLR2A ZNF143 ZNF600 EZH2 EGR2 ZBED3-AS1 PDE8B GC05M077218
GH05F077029 0.5 ENCODE 10.6 -56.1 -56069 2.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 AGGF1 ENSG00000250615 SNORA47 ZBED3-AS1 CRHBP
GH05F077231 1.4 FANTOM5 Ensembl ENCODE 10.5 +144.9 144857 0.9 HDAC1 CTCF ESRRA JUN TAL1 FOSL1 HIC1 GATA3 ZNF766 GATA2 ZBED3-AS1 S100Z GC05M077218 GC05M077268
GH05F077418 0.2 Ensembl 10.5 +332.2 332161 0.2 ZNF664 SUZ12 ZBED3-AS1 GC05M077427 GC05M077395
GH05F077145 0.2 Ensembl 10.3 +59.4 59361 1.0 JUND GATA2 ZNF366 JUN MAX ATF2 PDE8B ZBED3-AS1 SNORA47 WDR41 HMGB1P35 ZBED3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZBED3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZBED3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001283407 460 2401 ARID4B SIN3A DMAP1 ZNF48 ZNF2 YY1 SLC30A9 GLIS2 ZNF207 KLF7

Genomic Location for ZBED3-AS1 Gene

Chromosome:
5
Start:
77,086,740 bp from pter
End:
77,166,909 bp from pter
Size:
80,170 bases
Orientation:
Plus strand

Genomic View for ZBED3-AS1 Gene

Genes around ZBED3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBED3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBED3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED3-AS1 Gene

Proteins for ZBED3-AS1 Gene

Post-translational modifications for ZBED3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZBED3-AS1 Gene

Domains & Families for ZBED3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZBED3-AS1 Gene

Function for ZBED3-AS1 Gene

Phenotypes for ZBED3-AS1 Gene

GenomeRNAi human phenotypes for ZBED3-AS1:
genes like me logo Genes that share phenotypes with ZBED3-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZBED3-AS1 Gene

Localization for ZBED3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZBED3-AS1 Gene

Pathways & Interactions for ZBED3-AS1 Gene

SuperPathways for ZBED3-AS1 Gene

No Data Available

Interacting Proteins for ZBED3-AS1 Gene

Gene Ontology (GO) - Biological Process for ZBED3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZBED3-AS1 Gene

Transcripts for ZBED3-AS1 Gene

mRNA/cDNA for ZBED3-AS1 Gene

(4) Additional mRNA sequences :
(17) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZBED3-AS1 Gene

ZBED3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED3-AS1 Gene

No ASD Table

Relevant External Links for ZBED3-AS1 Gene

GeneLoc Exon Structure for
ZBED3-AS1
ECgene alternative splicing isoforms for
ZBED3-AS1

Expression for ZBED3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZBED3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZBED3-AS1 Gene

This gene is overexpressed in Adipose - Visceral (Omentum) (x4.3).

SOURCE GeneReport for Unigene cluster for ZBED3-AS1 Gene:

Hs.161338
genes like me logo Genes that share expression patterns with ZBED3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZBED3-AS1 Gene

Orthologs for ZBED3-AS1 Gene

Evolution for ZBED3-AS1 Gene

ENSEMBL:
Gene Tree for ZBED3-AS1 (if available)
TreeFam:
Gene Tree for ZBED3-AS1 (if available)

No data available for Orthologs for ZBED3-AS1 Gene

Paralogs for ZBED3-AS1 Gene

No data available for Paralogs for ZBED3-AS1 Gene

Variants for ZBED3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZBED3-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10037303 -- 77,118,072(+) TGGGA(C/T)TACAG intron-variant
rs10037320 -- 77,118,145(+) TTTCA(C/G)CATGT intron-variant
rs10042635 -- 77,121,730(+) cttga(A/T)ctcct intron-variant
rs10052560 -- 77,134,477(+) CAAGT(A/G)TCCCA intron-variant
rs10055050 -- 77,130,146(+) GGGGC(A/G)GGGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZBED3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2730326 CNV deletion 23290073
esv2730327 CNV deletion 23290073
esv3307010 CNV mobile element insertion 20981092
esv3349246 CNV insertion 20981092
esv3430649 CNV insertion 20981092
esv3605480 CNV loss 21293372
nsv1027236 CNV gain 25217958
nsv469515 CNV loss 16826518
nsv4886 CNV insertion 18451855
nsv4887 CNV insertion 18451855
nsv823102 CNV gain 20364138
nsv980687 CNV duplication 23825009

Relevant External Links for ZBED3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZBED3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZBED3-AS1 Gene

Disorders for ZBED3-AS1 Gene

Relevant External Links for ZBED3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZBED3-AS1

No disorders were found for ZBED3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBED3-AS1 Gene

Publications for ZBED3-AS1 Gene

  1. Long noncoding RNAs expression signatures in chondrogenic differentiation of human bone marrow mesenchymal stem cells. (PMID: 25482444) Wang L. … Wang Y. (Biochem. Biophys. Res. Commun. 2015) 2 3 64
  2. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight B.F. … . (Nat. Genet. 2010) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZBED3-AS1 Gene

Sources for ZBED3-AS1 Gene

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