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Aliases for ZBED3 Gene

Aliases for ZBED3 Gene

  • Zinc Finger, BED-Type Containing 3 2 3
  • Axin-Interacting Protein 3 4
  • Zinc Finger BED Domain-Containing Protein 3 3
  • Zinc Finger, BED Domain Containing 3 3
  • 2610005H11Rik 3

External Ids for ZBED3 Gene

Previous GeneCards Identifiers for ZBED3 Gene

  • GC05M076606
  • GC05M076411
  • GC05M076456
  • GC05M076408
  • GC05M076367
  • GC05M071579

Summaries for ZBED3 Gene

GeneCards Summary for ZBED3 Gene

ZBED3 (Zinc Finger, BED-Type Containing 3) is a Protein Coding gene. An important paralog of this gene is ZBED2.

UniProtKB/Swiss-Prot for ZBED3 Gene

  • Acts as a positive regulator in the activation of the canonical Wnt/beta-catenin signaling pathway by stabilizing cytoplasmic beta-catenin. Involved in transcription activation of Wnt target gene expression (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED3 Gene

Genomics for ZBED3 Gene

Regulatory Elements for ZBED3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZBED3 Gene

Start:
77,072,072 bp from pter
End:
77,087,323 bp from pter
Size:
15,252 bases
Orientation:
Minus strand

Genomic View for ZBED3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZBED3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED3 Gene

Proteins for ZBED3 Gene

  • Protein details for ZBED3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96IU2-ZBED3_HUMAN
    Recommended name:
    Zinc finger BED domain-containing protein 3
    Protein Accession:
    Q96IU2
    Secondary Accessions:

    Protein attributes for ZBED3 Gene

    Size:
    234 amino acids
    Molecular mass:
    25132 Da
    Quaternary structure:
    • Interacts with AXIN1; the interaction is direct, enhanced by protein kinase GSK3B and casein kinase CSNK1E activities and decreases GSK3B-induced beta-catenin serine and threonine phosphorylations.

neXtProt entry for ZBED3 Gene

Proteomics data for ZBED3 Gene at MOPED

Post-translational modifications for ZBED3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZBED3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZBED3 Gene

Domains for ZBED3 Gene

Gene Families for ZBED3 Gene

HGNC:
  • ZBED :Zinc fingers, BED-type

Protein Domains for ZBED3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ZBED3 Gene

Graphical View of Domain Structure for InterPro Entry

Q96IU2

UniProtKB/Swiss-Prot:

ZBED3_HUMAN :
  • Q96IU2
Similarity:
  • Contains 1 BED-type zinc finger.
genes like me logo Genes that share domains with ZBED3: view

Function for ZBED3 Gene

Molecular function for ZBED3 Gene

UniProtKB/Swiss-Prot Function: Acts as a positive regulator in the activation of the canonical Wnt/beta-catenin signaling pathway by stabilizing cytoplasmic beta-catenin. Involved in transcription activation of Wnt target gene expression (By similarity).

Gene Ontology (GO) - Molecular Function for ZBED3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0005515 protein binding --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZBED3: view

Phenotypes for ZBED3 Gene

GenomeRNAi human phenotypes for ZBED3:
genes like me logo Genes that share phenotypes with ZBED3: view

Animal Model Products

CRISPR Products

miRNA for ZBED3 Gene

miRTarBase miRNAs that target ZBED3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZBED3

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZBED3 Gene

Localization for ZBED3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZBED3 Gene

Cytoplasm. Membrane. Note=Colocalizes with AXIN1 in the cytoplasm. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZBED3 Gene COMPARTMENTS Subcellular localization image for ZBED3 gene
Compartment Confidence
cytosol 4
nucleus 3

Gene Ontology (GO) - Cellular Components for ZBED3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol ISS --
GO:0016020 membrane ISS --
genes like me logo Genes that share ontologies with ZBED3: view

Pathways for ZBED3 Gene

SuperPathways for ZBED3 Gene

No Data Available

Interacting Proteins for ZBED3 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000255198%0d%0a9606.ENSP00000385269%0d%0a
Selected Interacting proteins: ENSP00000255198 for ZBED3 Gene via STRING

Symbol External ID(s) Details
ELAVL1

Gene Ontology (GO) - Biological Process for ZBED3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001933 negative regulation of protein phosphorylation ISS --
GO:0016055 Wnt signaling pathway IEA --
GO:0045944 positive regulation of transcription from RNA polymerase II promoter ISS --
GO:0050821 protein stabilization ISS --
GO:0090263 positive regulation of canonical Wnt signaling pathway ISS --
genes like me logo Genes that share ontologies with ZBED3: view

No data available for Pathways by source for ZBED3 Gene

Transcripts for ZBED3 Gene

mRNA/cDNA for ZBED3 Gene

(95) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZBED3 Gene

Zinc finger, BED-type containing 3:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZBED3

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED3 Gene

No ASD Table

Relevant External Links for ZBED3 Gene

GeneLoc Exon Structure for
ZBED3
ECgene alternative splicing isoforms for
ZBED3

Expression for ZBED3 Gene

mRNA expression in normal human tissues for ZBED3 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZBED3 Gene

SOURCE GeneReport for Unigene cluster for ZBED3 Gene Hs.584988

genes like me logo Genes that share expressions with ZBED3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZBED3 Gene

Orthologs for ZBED3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZBED3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ZBED3 35
  • 86.1 (n)
  • 83.89 (a)
mouse
(Mus musculus)
Mammalia Zbed3 35
  • 68.48 (n)
  • 54.75 (a)
Zbed3 16
Zbed3 36
  • 51 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 58 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Zbed3 35
  • 68.47 (n)
  • 57.66 (a)
Species with no ortholog for ZBED3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZBED3 Gene

ENSEMBL:
Gene Tree for ZBED3 (if available)
TreeFam:
Gene Tree for ZBED3 (if available)

Paralogs for ZBED3 Gene

Paralogs for ZBED3 Gene

Selected SIMAP similar genes for ZBED3 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ZBED3: view

Variants for ZBED3 Gene

Sequence variations from dbSNP and Humsavar for ZBED3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs1056586 -- 77,077,025(-) CACAC(C/T)CTAAG utr-variant-3-prime
rs1056587 -- 77,076,884(-) GAGCT(C/T)CAGGA utr-variant-3-prime
rs2303713 -- 77,077,415(+) CGGCC(A/G)GCTCG missense, reference
rs2303714 -- 77,077,416(+) GGCCA(C/G)CTCGC reference, missense
rs2914143 -- 77,084,175(+) GAAGC(A/G)TACGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZBED3 Gene

Variant ID Type Subtype PubMed ID
nsv823102 CNV Gain 20364138
esv29310 CNV Loss 19812545
nsv469515 CNV Loss 16826518
nsv4886 CNV Insertion 18451855

Relevant External Links for ZBED3 Gene

HapMap Linkage Disequilibrium report
ZBED3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZBED3 Gene

Disorders for ZBED3 Gene

Relevant External Links for ZBED3

Human Genome Epidemiology (HuGE) Navigator
ZBED3
genes like me logo Genes that share disorders with ZBED3: view

No data available for UniProtKB/Swiss-Prot for ZBED3 Gene

Publications for ZBED3 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions. (PMID: 23533661) Hayward A. … Jern P. (PLoS ONE 2013) 2 3
  3. High-content genome-wide RNAi screens identify regulators of parkin upstream of mitophagy. (PMID: 24270810) Hasson S.A. … Youle R.J. (Nature 2013) 3
  4. Zinc-finger BED domain-containing 3 (Zbed3) is a novel secreted protein associated with insulin resistance in humans. (PMID: 24283382) Jia Y. … Li L. (J. Intern. Med. 2013) 3
  5. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4

Products for ZBED3 Gene

Sources for ZBED3 Gene

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