Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZBED3 Gene

Aliases for ZBED3 Gene

  • Zinc Finger BED-Type Containing 3 2 3
  • Zinc Finger, BED-Type Containing 3 3 5
  • Axin-Interacting Protein 3 4
  • Zinc Finger, BED Domain Containing 3 3
  • 2610005H11Rik 3

External Ids for ZBED3 Gene

Previous GeneCards Identifiers for ZBED3 Gene

  • GC05M076606
  • GC05M076411
  • GC05M076456
  • GC05M076408
  • GC05M076367
  • GC05M071579

Summaries for ZBED3 Gene

GeneCards Summary for ZBED3 Gene

ZBED3 (Zinc Finger BED-Type Containing 3) is a Protein Coding gene. An important paralog of this gene is ZBED2.

UniProtKB/Swiss-Prot for ZBED3 Gene

  • Acts as a positive regulator in the activation of the canonical Wnt/beta-catenin signaling pathway by stabilizing cytoplasmic beta-catenin. Involved in transcription activation of Wnt target gene expression (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZBED3 Gene

Genomics for ZBED3 Gene

Regulatory Elements for ZBED3 Gene

Enhancers for ZBED3 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ZBED3 on UCSC Golden Path with GeneCards custom track

Promoters for ZBED3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ZBED3 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZBED3 Gene

77,072,072 bp from pter
77,087,323 bp from pter
15,252 bases
Minus strand

Genomic View for ZBED3 Gene

Genes around ZBED3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZBED3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZBED3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZBED3 Gene

Proteins for ZBED3 Gene

  • Protein details for ZBED3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Zinc finger BED domain-containing protein 3
    Protein Accession:

    Protein attributes for ZBED3 Gene

    234 amino acids
    Molecular mass:
    25132 Da
    Quaternary structure:
    • Interacts with AXIN1; the interaction is direct, enhanced by protein kinase GSK3B and casein kinase CSNK1E activities and decreases GSK3B-induced beta-catenin serine and threonine phosphorylations.

neXtProt entry for ZBED3 Gene

Proteomics data for ZBED3 Gene at MOPED

Post-translational modifications for ZBED3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZBED3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZBED3 Gene

Domains & Families for ZBED3 Gene

Gene Families for ZBED3 Gene

Protein Domains for ZBED3 Gene


Suggested Antigen Peptide Sequences for ZBED3 Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 BED-type zinc finger.
  • Contains 1 BED-type zinc finger.
genes like me logo Genes that share domains with ZBED3: view

Function for ZBED3 Gene

Molecular function for ZBED3 Gene

UniProtKB/Swiss-Prot Function:
Acts as a positive regulator in the activation of the canonical Wnt/beta-catenin signaling pathway by stabilizing cytoplasmic beta-catenin. Involved in transcription activation of Wnt target gene expression (By similarity).

Gene Ontology (GO) - Molecular Function for ZBED3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IEA --
genes like me logo Genes that share ontologies with ZBED3: view
genes like me logo Genes that share phenotypes with ZBED3: view

Animal Model Products

miRNA for ZBED3 Gene

miRTarBase miRNAs that target ZBED3

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZBED3 Gene

Localization for ZBED3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZBED3 Gene

Cytoplasm. Membrane. Note=Colocalizes with AXIN1 in the cytoplasm. {ECO:0000250}.

Subcellular locations from

Jensen Localization Image for ZBED3 Gene COMPARTMENTS Subcellular localization image for ZBED3 gene
Compartment Confidence
cytosol 4
nucleus 3

No data available for Gene Ontology (GO) - Cellular Components for ZBED3 Gene

Pathways & Interactions for ZBED3 Gene

SuperPathways for ZBED3 Gene

No Data Available

Interacting Proteins for ZBED3 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: ENSP00000255198 for ZBED3 Gene via STRING

Symbol External ID(s) Details

Gene Ontology (GO) - Biological Process for ZBED3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0090263 positive regulation of canonical Wnt signaling pathway IEA,ISS --
GO:1903955 positive regulation of protein targeting to mitochondrion IMP 24270810
genes like me logo Genes that share ontologies with ZBED3: view

No data available for Pathways by source and SIGNOR curated interactions for ZBED3 Gene

Drugs & Compounds for ZBED3 Gene

No Compound Related Data Available

Transcripts for ZBED3 Gene

mRNA/cDNA for ZBED3 Gene

Unigene Clusters for ZBED3 Gene

Zinc finger, BED-type containing 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZBED3 Gene

No ASD Table

Relevant External Links for ZBED3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ZBED3 Gene

mRNA expression in normal human tissues for ZBED3 Gene

Protein differential expression in normal tissues from HIPED for ZBED3 Gene

This gene is overexpressed in Urinary Bladder (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZBED3 Gene

SOURCE GeneReport for Unigene cluster for ZBED3 Gene Hs.584988

genes like me logo Genes that share expression patterns with ZBED3: view

Protein tissue co-expression partners for ZBED3 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZBED3 Gene

Orthologs for ZBED3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZBED3 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia ZBED3 35
  • 86.1 (n)
  • 83.89 (a)
(Mus musculus)
Mammalia Zbed3 35
  • 68.48 (n)
  • 54.75 (a)
Zbed3 16
Zbed3 36
  • 51 (a)
(Rattus norvegicus)
Mammalia Zbed3 35
  • 68.47 (n)
  • 57.66 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 58 (a)
Species with no ortholog for ZBED3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZBED3 Gene

Gene Tree for ZBED3 (if available)
Gene Tree for ZBED3 (if available)

Paralogs for ZBED3 Gene

Paralogs for ZBED3 Gene

(1) SIMAP similar genes for ZBED3 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ZBED3: view

Variants for ZBED3 Gene

Sequence variations from dbSNP and Humsavar for ZBED3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs2914143 -- 77,084,175(+) GAAGC(A/G)TACGG intron-variant
rs1056586 -- 77,077,025(-) CACAC(C/T)CTAAG utr-variant-3-prime
rs1056587 -- 77,076,884(-) GAGCT(C/T)CAGGA utr-variant-3-prime
rs6861237 -- 77,078,133(+) TCAAG(G/T)GGGTC intron-variant
rs6861535 -- 77,078,252(+) CTTAA(C/T)AACAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZBED3 Gene

Variant ID Type Subtype PubMed ID
nsv823102 CNV Gain 20364138
esv29310 CNV Loss 19812545
nsv469515 CNV Loss 16826518
nsv4886 CNV Insertion 18451855

Variation tolerance for ZBED3 Gene

Gene Damage Index Score: 7.44; 81.96% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for ZBED3 Gene

Disorders for ZBED3 Gene

Relevant External Links for ZBED3

Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ZBED3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZBED3 Gene

Publications for ZBED3 Gene

  1. ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions. (PMID: 23533661) Hayward A. … Jern P. (PLoS ONE 2013) 2 3 67
  2. Zbed3 contributes to malignant phenotype of lung cancer via regulating I^-catenin and P120-catenin 1. (PMID: 25263389) Fan C. … Wang E. (Mol. Carcinog. 2015) 3
  3. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. (PMID: 26673895) KA+rlA+ K. … GAPrlich D. (Elife 2015) 3
  4. High-content genome-wide RNAi screens identify regulators of parkin upstream of mitophagy. (PMID: 24270810) Hasson S.A. … Youle R.J. (Nature 2013) 3
  5. Zinc-finger BED domain-containing 3 (Zbed3) is a novel secreted protein associated with insulin resistance in humans. (PMID: 24283382) Jia Y. … Li L. (J. Intern. Med. 2013) 3

Products for ZBED3 Gene

Sources for ZBED3 Gene