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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZAR1 Gene

protein-coding   GIFtS: 43
GCID: GC04P048492

zygote arrest 1
 Explore 1 disease affiliated with
ZAR1 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for ZAR1    

Aliases
for ZAR1 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Zygote Arrest 11 2
Oocyte-Specific Maternal Effect Factor2 3
Zygote Arrest Protein 12

External Ids:    HGNC: 204361   Entrez Gene: 3263402   Ensembl: ENSG000001822237   OMIM: 6075205   UniProtKB: Q86SH23   

Export aliases for ZAR1 gene to outside databases

Previous GC identifers: GC04U900018 GC04P048342 GC04P048407 GC04P048333 GC04P048187 GC04P047812


Summaries
for ZAR1 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for ZAR1:
The female gamete, the oocyte, serves the distinct purpose of transmitting the maternal genome and other maternal
factors critical for postovulation events. Oocytes have diverse functions in ovarian folliculogenesis, fertilization,
and embryogenesis. ZAR1 is an oocyte-specific gene that appears to function at the oocyte-to-gamete transition (Wu et
al., 2003 (PubMed 12539046)).(supplied by OMIM, Mar 2008)

UniProtKB/Swiss-Prot: ZAR1_HUMAN, Q86SH2
Function: Essential for female fertility. May play a role in the oocyte-to-embryo transition (By similarity)




Genomic Views
for ZAR1 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_006238.11  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZAR1 gene promoter:
         MEF-2A   FAC1   AML1a   HOXA3   aMEF-2   HNF-1A   RSRFC4   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: ZAR1 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZAR1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZAR1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p11   Ensembl cytogenetic band:  4p11   HGNC cytogenetic band: 4p11

ZAR1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZAR1 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P048492:  view genomic region     (about GC identifiers)

Start:
 48,492,269 bp from pter      End:
 48,509,084 bp from pter
Size:
 16,816 bases      Orientation:
 plus strand

Proteins
for ZAR1 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: ZAR1_HUMAN, Q86SH2 (See protein sequence)
Recommended Name: Zygote arrest protein 1  
Size: 424 amino acids; 45873 Da
Subcellular location: Cytoplasm (By similarity)

Explore the universe of human proteins at neXtProt for ZAR1: NX_Q86SH2

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q86SH2

    • ZAR1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_783318.1  
    ENSEMBL proteins: 
     ENSP00000329803  

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    Uscn Proteins for ZAR1

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IEA--


    ZAR1 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for ZAR1 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    ZAR1 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR026775 Zar1

    Graphical View of Domain Structure for InterPro Entry Q86SH2

    ProtoNet protein and cluster: Q86SH2

    UniProtKB/Swiss-Prot: ZAR1_HUMAN, Q86SH2
    Similarity: Belongs to the ZAR1 family


    Function
    for ZAR1 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: ZAR1_HUMAN, Q86SH2
    Function: Essential for female fertility. May play a role in the oocyte-to-embryo transition (By similarity)

    miRNA
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    Inhib. RNA
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    Animal Models:
         Mouse knock-out Zar1tm1Zuk for ZAR1
         2 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Zar1):
     other  reproductive system 

    ZAR1 for phenotypes           About GeneDecksing


    Pathways & Interactions
    for ZAR1 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZAR1

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007275multicellular organismal development IEA--


    ZAR1 for ontologies           About GeneDecksing



    Drugs & Compounds
    for ZAR1 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZAR1
    Search CenterWatch for drugs/clinical trials and news about ZAR1 

    Transcripts
    for ZAR1 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    About This Section
    REFSEQ mRNAs for ZAR1 gene: 
    NM_175619.1  

    Unigene Cluster for ZAR1:

    Zygote arrest 1
    Hs.276457  [show with all ESTs]
    Unigene Representative Sequence: NM_175619
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000327939(uc003gyd.3) ENST00000504700

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    hsa-miR-106a*
    SwitchGear 3'UTR luciferase reporter plasmid: ZAR1 3' UTR sequence
    Inhib. RNA
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    Clone
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    Primer
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    Additional cDNA sequence: 

    AY191416.1 BC136265.1 

    1 DOTS entry:

    DT.91723347 

    4 AceView cDNA sequences:

    AY191416 NM_175619 AI217763 BF742595 

    GeneLoc Exon Structure


    Expression
    for ZAR1 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZAR1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AAAGGCAGTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    ZAR1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    OvaryAntral FollicleSecondary OocyteFemale Gametocytes, Germ Cells
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ZAR1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZAR1

    SOURCE GeneReport for Unigene cluster: Hs.276457

    UniProtKB/Swiss-Prot: ZAR1_HUMAN, Q86SH2
    Tissue specificity: Ovary and testis

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    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZAR1

    Orthologs
    for ZAR1 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of chordates.

    Orthologs for ZAR1 gene from 5/14 species (see all 14)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Zar11 , 5 zygote arrest 11, 5 72.05(n)1
    61.28(a)1    		   5 (38.44 cM)5
    3177551  NM_174877.31  NP_777366.11 
     725771145 
    chicken
    (Gallus gallus)    		 Aves LOC1008576041 zygote arrest protein 1-like 70.47(n)
    74.09(a)    		   100857604  XM_003641208.1  XP_003641256.1 
    lizard
    (Anolis carolinensis)    		 Reptilia ZAR16
    		 --
    		 54(a)
    		 1 ↔ 1
    		 GL343293.1(878703-884661)
    African clawed frog
    (Xenopus laevis)    		 Amphibia Xl.258492 Xenopus laevis zygote arrest 1 (Zar1) mRNA, complete more 81.44(n)    AY283176.1 
    zebrafish
    (Danio rerio)    		 Actinopterygii zar12 zygote arrest 1 77.19(n)   369189  AY283178.1 


    ENSEMBL Gene Tree for ZAR1 (if available)
    TreeFam Gene Tree for ZAR1 (if available) 

    Paralogs
    for ZAR1 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZAR1 gene
    ZAR1L2  

    ZAR1 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for ZAR1
    PGOHUM00000241100


    Genomic Variants
    for ZAR1 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for ZAR1
         1 CNV: 4393
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    Disorders / Diseases
    for ZAR1 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    ZAR1 for disorders           About GeneDecksing

    OMIM gene information: 607520    OMIM disorders: --

    1 disease for ZAR1:    About MalaCards
    melanoma


    Export disorders for ZAR1 gene to outside databases

    Publications
    for ZAR1 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZAR1 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZAR1)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Zygote arrest 1 (Zar1) is a novel maternal-effect gene critical for the oocyte-to-embryo transition. (PubMed id 12539046)1, 2, 3 Wu X....Matzuk M.M. (2003)
    2. Zygote arrest 1 (Zar1) is an evolutionarily conserved gene expressed in vertebrate ovaries. (PubMed id 12773403)1, 2, 9 Wu X.... Matzuk M.M. (2003)
    3. Zygote arrest 1 gene in pig, cattle and human: evidence of different transcript variants in male and female germ cells. (PubMed id 16551357)1, 9 Uzbekova S....Mermillod P. (2006)
    4. Identification and analysis of an early diagnostic ma rker for malignant melanoma: ZAR1 intra-genic differential methylation. (PubMed id 20654783)1 Shinojima Y....Nagase H. (2010)
    5. Aberrant hypermethylation of non-promoter zygote arre st 1 (ZAR1) in human brain tumors. (PubMed id 21206179)1 Watanabe T....Nagase H. (2010)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    7. Developmental competence of human in vitro aged oocytes as host cells for nuclear transfer. (PubMed id 16957049)9 Hall V.J....Stojkovic M. (2007)
    8. Distinct sets of developmentally regulated genes that are expressed by human oocytes and human embryonic stem cells. (PubMed id 17126334)9 Zhang P....Kere J. (2007)

    External Searches for ZAR1 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing ZAR1 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 326340 HGNC: 20436 AceView: ZAR1 Ensembl:ENSG00000182223 euGenes: HUgn326340
    ECgene: ZAR1 H-InvDB: ZAR1

    Other Databases showing ZAR1 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing ZAR1 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZAR1 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for ZAR1 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for ZAR1 gene:
    Search GeneIP for patents involving ZAR1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    About This Section

     
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