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ZAN Gene

protein-coding   GIFtS: 50

GC07P100169
zonadhesin
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases &
Descriptions
for ZAN

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section
Aliases
zonadhesin 2
External Ids
HGNC: 128571
Entrez Gene: 74552
UniProtKB: Q9Y4933
Ensembl: ENSG000001468397
Search outside databases for aliases for ZAN gene

Previous GC identifers: GC07P098866 GC07P099928 GC07P099943 GC07P099944 GC07P099975

Summaries
for ZAN

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

 EntrezGene summary for ZAN:
This gene encodes a sperm membrane protein that binds the zona pellucida of the egg in a
species-specific manner. The encoded protein may be involved in signaling or gamete recognition.
Alternate transcriptional splice variants, encoding different isoforms, have been characterized.
[provided by RefSeq]

UniProtKB/Swiss-Prot: ZAN_HUMAN, Q9Y493
Function: Binds in a species-specific manner to the zona pellucida of the egg. May be involved in
gamete recognition and/or signaling

Genomic Location
for ZAN

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

 Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the ZAN gene  

Entrez Gene cytogenetic band: 7q22   Ensembl cytogenetic band:  7q22.1   HGNC cytogenetic band: 7q22

ZAN Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P100169:     (about GC identifiers)

Start:
 100,169,185 bp from pter
End:
 100,233,355 bp from pter
Size:
 64,171 bases
Orientation:
 plus strand

1 alternative location:
Chr7+,CRA_TCAG 99,690,854-99,755,024     
RefSeq DNA sequence:
NC_000007.12  NT_007933.14  NT_079595.2  

Proteins
for ZAN

(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

 UniProtKB/Swiss-Prot: ZAN_HUMAN, Q9Y493 (See protein sequence)
Recommended Name: Zonadhesin precursor  
Size: 2812 amino acids; 305573 Da
Subunit: Probably forms covalent oligomers
Subcellular location: Cell membrane; Single-pass type I membrane protein. Note=Exclusively on the
apical region of the sperm head (By similarity)
Sequence caution: Sequence=AAC78790.1; Type=Erroneous gene model prediction;
Secondary accessions: A0FKC8 O00218 Q96L85 Q96L86 Q96L87 Q96L88 Q96L89 Q96L90 Q9BXN9 Q9BZ83 Q9BZ84
Q9BZ85 Q9BZ86 Q9BZ87 Q9BZ88
Alternative splicing: 7 isoforms:  Q9Y493-1   Q9Y493-2   Q9Y493-3   Q9Y493-4   Q9Y493-5   Q9Y493-6   Q9Y493-7   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


    • REFSEQ proteins (2 alternative transcripts): 
    NP_003377.1  NP_775082.1  


    ENSEMBL proteins: 
    ENSP00000381043 ENSP00000348903 ENSP00000381041 ENSP00000300275 ENSP00000338690 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
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    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse Abcam for Recombinant Proteins
    Human Recombinant Proteins from Abnova (ZAN)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886 plasma membrane NAS9126492
    GO:0016021 integral to membrane IEA--
    About this table

    Antibodies for ZAN: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse Antibodies at Sigma-Aldrich
    Browse R&D Systems for Antibodies
    Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Search Novus for antibodies for ZAN

    Assays for ZAN: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    Protein Domains/
    Families
    for ZAN

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    5/10 InterPro domains/families (see all 10 ):
     IPR014853 Conserved-cysteine-rich_domain
     IPR003328 TILa_Cysrich
     IPR000742 EGF_3
     IPR006209 EGF
     IPR006210 EGF-like


       GeneDecks  ZAN for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q9Y493

    ProtoNet protein and cluster: Q9Y493

    5 Blocks protein families:
    IPB001007 von Willebrand factor
    IPB001846 Von Willebrand factor
    IPB002919 Trypsin inhibitor-like
    IPB006210 Type I EGF
    IPB006552 VC out


    UniProtKB/Swiss-Prot: ZAN_HUMAN, Q9Y493
    Domain: The MAM domains probably mediate sperm adhesion to the zona pellucida
    Domain: During sperm migration through the reproductive tracts, the mucin-like domain might inhibit
    inappropriate trapping of spermatozoa or promoting adhesion to the oviductal isthmus
    Domain: The VWFD domain 2 may mediate covalent oligomerization (By similarity)
    Similarity: Contains 1 EGF-like domain
    Similarity: Contains 3 MAM domains
    Similarity: Contains 4 VWFD domains

    Gene Function
    for ZAN

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section
    Inhib.
    RNA:    		Invitrogen RNAi Products for gene knock-down (ZAN)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 6): NM_173055

                  Applied Biosystems Silencer® siRNAs for ZAN

                  Sigma-Aldrich siRNA and siRNA Panels for ZAN  
                         Sigma-Aldrich shRNA for ZAN  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_003386
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_003386
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_003386 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_003386

    UniProtKB/Swiss-Prot: ZAN_HUMAN, Q9Y493
    Function: Binds in a species-specific manner to the zona pellucida of the egg. May be involved in
    gamete recognition and/or signaling

    Genatlas biochemistry entry for ZAN:
    zonadhesin,sperm membrane protein,binding the zona pellucida

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IEA--
    About this table

    Pathways & Interactions
    for ZAN

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section



    2 Interacting proteins for ZAN (ENSP000003002753) via UniProtKB, MINT, and/or STRING
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TECTBENSP000003584303STRING (score=.87)
    NID1ENSP000002641873STRING (score=.749)
    About this table

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007339 binding of sperm to zona pellucida NAS9126492
    GO:0016337 cell-cell adhesion NAS9126492
    About this table

    Drugs & Compounds
    for ZAN

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for ZAN

    Transcripts
    for ZAN

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section
    Inhib.
    RNA:    		Invitrogen RNAi Products for gene knock-down (ZAN)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 6): NM_173055

                  Sigma-Aldrich siRNA and siRNA Panels for ZAN  
                         Sigma-Aldrich shRNA for ZAN  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_003386  NM_173059  

    REFSEQ mRNAs for ZAN gene (2 alternative transcripts): 

    NM_003386.1   NM_173059.1   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_003386  NM_173059  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_003386
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_003386
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_003386 

    Additional cDNA sequence: 

    AF332977.1 AF332980.1 AK302596.1 U83191.1 

    3 DOTS entries:

    DT.99969490  DT.97798990  DT.97763305 

    13 AceView cDNA sequences:

    AF332978 NM_173055 AF332975 AF332980 AF332977 NM_173057 NM_173059 AF332979 
    NM_173056 AF332976 NM_003386 NM_173058 U83191 

    highest scoring ESTs for ZAN:

    AF332977 AF332980 AF332975 AF332976 AF332978 AF332979 NM_003386 NM_173059 U83191 NM_173055 

    Unigene Cluster for ZAN:

    Zonadhesin
    Hs.307004  [show with all ESTs]
    Unigene Representative Sequence: AF332977


    GeneLoc Exon Structure

    5 Ensembl transcripts including schematic representations:
    ENST00000397952  ENST00000356510  ENST00000397950  ENST00000349350  ENST00000348028  

    Expression
    for ZAN

    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    ZAN expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for ZAN

    1 / 2 / 3

    10 probe-sets matching ZAN gene


    		Affymetrix
    probe-set    		 Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    		224268_x_at2, 3 U133-B 1 1.00 1.00 -- -- AF332979 0.60 1.00 0.82 1

    		224264_x_at2, 3 U133-B 1 1.00 1.00 -- -- AF332975 0.60 1.00 0.82 1

    		224263_x_at2, 3 U133-B 1 1.00 1.00 -- -- AF332976 0.60 1.00 0.82 1

    		224265_s_at2, 3 U133-B 1 1.00 1.00 -- -- AF332980 0.80 1.00 0.91 1

    		224267_x_at2, 3 U133-B 1 1.00 1.00 -- -- AF332978 0.60 1.00 0.82 1

    		224268_x_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    		224264_x_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    		224263_x_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    		224265_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    		224267_x_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: ATGCTGCCCA

    SOURCE GeneReport for Unigene cluster: Hs.307004

    UniProtKB/Swiss-Prot: ZAN_HUMAN, Q9Y493
    Tissue specificity: In testis, primarily in haploid spermatids

    Orthologs
    for ZAN

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section
    Orthologs for ZAN gene from 4 species
    Organism Gene Locus Description Human
    Similarity    		 NCBI accessions
    dog
    (Canis familiaris)    		 ZAN1   -- zonadhesin 74.81(n)
    64.68(a)    		 489831  XM_546949.2  XP_546949.2 
    rat
    (Rattus norvegicus)    		 Zan1   -- zonadhesin 63.62(n)
    51.13(a)    		 304379  XM_222025.4  XP_222025.4 
    mouse
    (Mus musculus)    		 Zan1, 5 5 (78.00 cM)5
    		 zonadhesin1, 5 68.54(n)1
    58.05(a)1    		 226351  NM_011741.11  NP_035871.11 
     AF3120335  AK1585045  (see all 8)
    zebrafish
    (Danio rerio)    		 LOC5618381   -- similar to zonadhesin 51.39(n)
    41.03(a)    		 561838  XM_685238.2  XP_690330.2 
    About this table        Species with no ortholog for ZAN

    ENSEMBL Gene Tree for ZAN

    Paralogs
    for ZAN

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for ZAN gene
    MUC5AC2  ENSG000001790662  FCGBP2  

    SNPs/Variants
    for ZAN

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/440 NCBI SNPs in ZAN are shown (see all 440 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 72)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 7 posSequenceRecsAA
    Chg    		TypeMoreRecsAllele
    freq    		PopTotal
    sample    		More
    ------------
    rs5394451,2
    		A,C,F,H,O100211303(-) CAATGC/GTGTAG 2 S/T mis1 ese315Minor allele frequency- G:0.44MN EA NA EU WA 1420
    rs5315031,2
    		A,C,F,H,O100215018(-) CTACCA/GGGAGA 2 L/P mis1 ese310Minor allele frequency- G:0.38EU EA WA NA 1014
    rs3143441,2
    		A,C,F,H,O100232939(+) GGTGGC/GCGTCC 2 A/G mis1 ese312Minor allele frequency- N:0.00EA NA EU WA 1052
    rs109533031,2
    		A,C,F,H100203549(+) ATGGCG/TGCCAG 2 G/C mis18Minor allele frequency- T:0.17EU EA WA 838
    --
    rs102479801,2
    		A,C,F,H100204220(+) AAAGCT/CTGCAG 2 P/L mis1 ese38Minor allele frequency- C:0.19EU EA WA 830
    rs22937661,2
    		C,F,H,O100209294(-) GTGTAC/TCAGCG 2 W/X non1 ese312Minor allele frequency- T:0.46EA NA EU WA 2470
    rs3143001,2
    		C,F,H,O100212023(-) CATCAT/CTGAAG 2 S/N mis112Minor allele frequency- C:0.24MN EU EA WA NA 1162
    rs3142981,2
    		A,C,F,H100209050(-) CACCGG/AGTGGT 2 S/P mis1 ese310Minor allele frequency- A:0.20NA EA EU WA 2092
    rs5421371,2
    		C,F,H,O100211013(-) TTGAAC/GAAGGG 2 F/L mis1 ese313Minor allele frequency- N:0.00MN EA NA EU WA 1232
    rs69427331,2
    		A,C,F,H100188699(+) TGGGCT/GGGCAG 2 R/L mis1 ese34Minor allele frequency- G:0.22EU EA WA 414
    About this table

    HapMap Linkage Disequilibrium images for ZAN (up to first 250kb)

    Disorders & Mutations
    for ZAN

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    		 OMIM: 602372

    Medical News
    for ZAN

    (Possibly Related Articles in Doctor's Guide)
    About This Section

    Publications
    for ZAN

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    		10/16 PubMed articles for ZAN gene (see all 16 ):

    Search for ZAN

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing ZAN

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section
    Entrez Gene: 7455 HGNC: 12857 AceView: ZAN Ensembl:ENSG00000146839 euGenes: HUgn7455
    ECgene: ZAN H-InvDB: ZAN

    Other Databases showing ZAN

    (According to HUGE)
    About This Section

    		   --

    Specialized Databases showing ZAN

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    		   --

    Licensable Technologies
    for ZAN

    (Available from WIS Yeda, Salk, Tufts)
    About This Section

    		  --

    Services
    for ZAN

    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for ZAN:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
    		  Free SNP selection tool



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     Millipore Preclinical / Clinical Development Services
     Millipore Immunoassay Services
     Millipore Target Screening & Profiling Services


     Predesigned and custom siRNAs for ZAN Browse antibodies at Sigma-Aldrich
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for ZAN Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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