ZACN Gene
protein-coding GIFtS : 45
GCID: GC17 P074075
zinc activated ligand-gated ion channel (Previous names: ligand-gated ion channel, zinc activated 1 ) (Previous symbol: LGICZ1 )
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Aliasesfor ZACN gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Zinc Activated Ligand-Gated Ion Channel 1 2 Ligand-Gated Ion Channel, Zinc Activated 11 2 L21 2 3 5 Ligand-Gated Ion Channel Zinc-Activated 12 3 LGICZ11 2 3 5 Ligand-Gated Ion-Channel Receptor L22 3 ZAC1 2 3 5 Ligand-Gated Ion Channel Subunit2 LGICZ1 2 3 Zinc Activated Ligand-Gated Ion Channel 12 ZAC11 2 Zinc-Activated Ligand-Gated Ion Channel2
Export aliases for ZACN gene to outside databases Previous GC identifers: GC17P071588 GC17P069504
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Summariesfor ZACN gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for ZACN : LGICZ1 is a zinc-activated ligand-gated ion channel that defines a new subgroup of the cysteine-loop superfamily of ligand-gated ion channels (Davies et al., 2003 (PubMed 12381728)).(supplied by OMIM, Mar 2008) UniProtKB/Swiss-Prot: ZACN_HUMAN, Q401N2 Function : Zinc-activated ligand-gated ion channelGene Wiki entry for ZACN (Zinc-activated ion channel)
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Genomic Viewsfor ZACN gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000017.10 NC_018928.1 NT_010783.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ZACN gene promoter: USF1 FAC1 USF-1 RREB-1 MyoD YY1 Other transcription factors Search SABiosciences Chromatin IP Primers for ZACN Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ZACN
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17q25.3 Ensembl cytogenetic band: 17q25.1 HGNC cytogenetic band: 17q25.3 ZACN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P074075: view genomic region
(about GC identifiers )
Start:
74,068,042 bp from pter
End:
74,079,747 bp from pter
Size:
11,706 bases
Orientation:
plus strand
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Proteinsfor ZACN gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: ZACN_HUMAN, Q401N2 (See
protein sequence )Recommended Name: Zinc-activated ligand-gated ion channel precursor Size : 412 amino acids; 45816 Da
Subcellular location : Cell membrane; Multi-pass membrane protein
Miscellaneous : The mouse and rat orthologous proteins do not exist
Caution : It is uncertain whether Met-1 or Met-2 is the initiator
Sequence caution : Sequence=AAI10598.1; Type=Erroneous initiation; Note=Translation N-terminally extended;Sequence=AAO20969.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=EAW89365.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions : Q2TB29 Q6ZWK3 Q86YW4Alternative splicing : 3 isoforms : Q401N2-1 Q401N2-2 Q401N2-3 (No experimental confirmation available. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay)Explore the universe of human proteins at neXtProt for ZACN: NX_Q401N2 Post-translational modifications:
Glycosylated1
View neXtProt modification sites for NX_Q401N2 ZACN Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_851321.2 ENSEMBL proteins: ENSP00000334854 ENSP00000397489 ENSP00000391936 ENSP00000376291 Human Recombinant Protein Products: Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view) : About this table
ZACN for ontologies About GeneDecksing ZACN Antibody Products: Assay Products for ZACN:
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Protein
Domains / Familiesfor ZACN gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ZACN for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q401N2 ProtoNet protein and cluster: Q401N2
1 Blocks protein family : IPB006201 Neurotransmitter-gated ion-channel UniProtKB/Swiss-Prot: ZACN_HUMAN, Q401N2 Similarity : Belongs to the ligand-gated ion channel (TC 1.A.9) family
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Functionfor ZACN gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: ZACN_HUMAN, Q401N2 Function : Zinc-activated ligand-gated ion channel
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ZACN (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ZACN (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: ZACN (NM_180990 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZACN Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ZACN
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZACN
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
ZACN for ontologies About GeneDecksing
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Pathways & Interactionsfor ZACN gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZACN Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
ZACN for ontologies About GeneDecksing
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Drugs & Compoundsfor ZACN gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
ZACN for compounds About GeneDecksing Browse Tocris compounds for ZACN 3 Novoseek chemical compound relationships for ZACN gene About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
potassium
33.9
1
14657415 (1)
calcium
31.7
2
14657414 (1), 18702192 (1)
sodium
21
1
14657413 (1)
Search CenterWatch for drugs/clinical trials and news about ZACN
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Transcriptsfor ZACN gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for ZACN gene: NM_180990.3 Unigene Cluster for ZACN:
Zinc activated ligand-gated ion channel Hs.714919 [show with all ESTs ] Unigene Representative Sequence: NM_180990 7 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000591500 ENST00000524242 ENST00000334586 ENST00000425015 (uc002jqn.2 uc002jqo.2 uc010dgu.2 )ENST00000421794 ENST00000590045 ENST00000392503 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ZACN (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ZACN (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: ZACN (NM_180990 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZACN Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ZACN
Additional cDNA sequence: AB223030.1 AF512521.1 BC110597.1
6 DOTS entries : DT.100736899 DT.91763886
DT.427916 DT.217247 DT.100797535 DT.101977811 6 AceView cDNA sequences :
AK122638 NM_180990 AF512521 W05282 AW263938 N75473 GeneLoc Exon Structure
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Expression for ZACN gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section ZACN expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GCTGGGGGCG
About this image ZACN expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Stem Cell Differentiation: 1 LifeMap Cell Name Category Posterior foregut-like cells (A scalable, suspensi... )Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See ZACN Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for ZACN SOURCE GeneReport for Unigene cluster: Hs.714919 UniProtKB/Swiss-Prot: ZACN_HUMAN, Q401N2 Tissue specificity : Detected in pancreas, brain, liver, placenta, trachea, kidney, spinal cord, stomach and fetalbrain. In the adult brain region expression is detected in the hippocampus, striatum, amygdala and thalamus SABiosciences Custom PCR Arrays for ZACN Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ZACNBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat ZACN QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ZACN QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ZACN In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZACN
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Orthologsfor ZACN gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for ZACN gene from 2/6 species (see all 6 ) About this table
Species with no ortholog for ZACN ENSEMBL Gene Tree for ZACN (if available)TreeFam Gene Tree for ZACN (if available)
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Paralogsfor ZACN gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for ZACN gene HTR3E 2 HTR3A 2 HTR3C 2 HTR3D 2 HTR3B 2
ZACN for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for ZACN PGOHUM00000246020
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Genomic Variantsfor ZACN gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 17 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for ZACN (74068042 - 74079747 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for ZACN 1 CNV : 35500
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ZACN
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Disorders
/ Diseasesfor ZACN gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ZACN for disorders About GeneDecksing
OMIM gene information: 610935
OMIM disorders : --12 diseases for ZACN : About MalaCards transient neonatal diabetes mellitus neonatal diabetes mellitus long qt syndrome idiopathic generalized epilepsy generalized epilepsy diabetes mellitus myocardial infarction sinusitis gastric cancer breast cancer schizophrenia melanoma 1 Novoseek disease relationship for ZACN gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
epilepsy
0
2
12752457 (1), 14501839 (1)
Export disorders for ZACN gene to outside databases
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Publicationsfor ZACN gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for ZACN gene, integrated from 9 sources (see all 58 ): (articles sorted by number of sources associating them with ZACN) Utopia : connect your pdf to the dynamic world of online information
Cloning and expression of ligand-gated ion-channel receptor L2 in central nervous system. (PubMed id 16083862) 1 , 2 , 3, 9 Houtani T.... Sugimoto T. (2005) A novel class of ligand-gated ion channel is activated by Zn2+. (PubMed id 12381728) 1 , 2 , 3, 9 Davies P.A.... Kirkness E.F. (2003) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196) 2 Zody M.C.... Nusbaum C. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 2 Ota T.... Sugano S. (2004) Impaired glucose homeostasis in transgenic mice expressing the human transient neonatal diabetes mellitus locus, TNDM. (PubMed id 15286800) 1 Ma D....Kelsey G. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) The Seventh Annual Ion Channel Retreat Vancouver, Can ada, June 29-July 1, 2009. (PubMed id 20158438) 9 Brugger S....King N. (2010) The sixth annual Ion Channel Retreat Vancouver, Canada, June 23-25, 2008. (PubMed id 19231940) 9 Choy N....Liang S. (2008)
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External Searches for ZACN gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ZACN gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ZACN gene
(According to HUGE )
About This Section --
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Specialized Databases showing ZACN gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for ZACN Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for ZACN gene: Search GeneIP for patents involving ZACN GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ZACN gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for ZACN OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for ZACN OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ZACN OriGene Protein Over-expression Lysate for ZACN Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for ZACN Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ZACN OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ZACN Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for ZACN OriGene Custom Protein Services for ZACN OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ZACN QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ZACN QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ZACN QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat ZACN QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ZACN QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ZACN
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ZACN Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZACN
ThermoFisher Antibodies for ZACN
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ZACN
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Aliases for ZACN
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Expression for ZACN
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