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Aliases for YY1AP1 Gene

Aliases for YY1AP1 Gene

  • YY1 Associated Protein 1 2 3
  • Hepatocellular Carcinoma Susceptibility Protein 3 4
  • Hepatocellular Carcinoma-Associated Protein 2 3 4
  • HCCA2 3 4
  • YY1AP 3 4
  • YY1-Associated Protein 1 3
  • HCCA1 3
  • YAP 3

External Ids for YY1AP1 Gene

Previous GeneCards Identifiers for YY1AP1 Gene

  • GC01M152444
  • GC01M153895
  • GC01M155630
  • GC01M126991

Summaries for YY1AP1 Gene

Entrez Gene Summary for YY1AP1 Gene

  • The encoded gene product presumably interacts with YY1 protein; however, its exact function is not known. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

GeneCards Summary for YY1AP1 Gene

YY1AP1 (YY1 Associated Protein 1) is a Protein Coding gene. Diseases associated with YY1AP1 include hepatocellular carcinoma. An important paralog of this gene is GON4L.

UniProtKB/Swiss-Prot for YY1AP1 Gene

  • Enhances transcription activation by YY1. May play a role in cell cycle regulation.

Gene Wiki entry for YY1AP1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for YY1AP1 Gene

Genomics for YY1AP1 Gene

Regulatory Elements for YY1AP1 Gene

Transcription factor binding sites by QIAGEN in the YY1AP1 gene promoter:

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for YY1AP1 Gene

Start:
155,659,442 bp from pter
End:
155,689,032 bp from pter
Size:
29,591 bases
Orientation:
Minus strand

Genomic View for YY1AP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for YY1AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for YY1AP1 Gene

Proteins for YY1AP1 Gene

  • Protein details for YY1AP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H869-YYAP1_HUMAN
    Recommended name:
    YY1-associated protein 1
    Protein Accession:
    Q9H869
    Secondary Accessions:
    • B0QZ54
    • B4DMP2
    • B4E0I0
    • D3DV96
    • D3DV98
    • H7BY62
    • Q5VYZ1
    • Q5VYZ4
    • Q5VYZ7
    • Q7L4C3
    • Q7L5E2
    • Q8IXA6
    • Q8TEW5
    • Q8TF04
    • Q96HB6
    • Q9BQ64
    • Q9NV84

    Protein attributes for YY1AP1 Gene

    Size:
    796 amino acids
    Molecular mass:
    87944 Da
    Quaternary structure:
    • Interacts with YY1. Interacts with MAD2L2.
    SequenceCaution:
    • Sequence=BAA91871.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for YY1AP1 Gene

neXtProt entry for YY1AP1 Gene

Proteomics data for YY1AP1 Gene at MOPED

Post-translational modifications for YY1AP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for YY1AP1 Gene

Domains for YY1AP1 Gene

Protein Domains for YY1AP1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with YY1AP1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for YY1AP1 Gene

Function for YY1AP1 Gene

Molecular function for YY1AP1 Gene

UniProtKB/Swiss-Prot Function: Enhances transcription activation by YY1. May play a role in cell cycle regulation.

Gene Ontology (GO) - Molecular Function for YY1AP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16713569
genes like me logo Genes that share ontologies with YY1AP1: view

Phenotypes for YY1AP1 Gene

genes like me logo Genes that share phenotypes with YY1AP1: view

Animal Model Products

CRISPR Products

miRNA for YY1AP1 Gene

miRTarBase miRNAs that target YY1AP1

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for YY1AP1 Gene

Localization for YY1AP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for YY1AP1 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for YY1AP1 Gene COMPARTMENTS Subcellular localization image for YY1AP1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for YY1AP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 17541814
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with YY1AP1: view

Pathways for YY1AP1 Gene

SuperPathways for YY1AP1 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Polycomb & Trithorax Complexes in human,mouse,rat

Gene Ontology (GO) - Biological Process for YY1AP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0051726 regulation of cell cycle IDA 17541814
genes like me logo Genes that share ontologies with YY1AP1: view

No data available for Pathways by source for YY1AP1 Gene

Transcripts for YY1AP1 Gene

Unigene Clusters for YY1AP1 Gene

YY1 associated protein 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for YY1AP1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for YY1AP1 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c · 13d ^ 14a · 14b · 14c ·
SP1: - - - -
SP2: - - - - - -
SP3: - - - -
SP4: - - - - - - - - - -
SP5: - - - -
SP6: - - - -
SP7: - -
SP8: - - - - - - - - - - -
SP9: - - - - - - - - - - - - - - -
SP10: - - - - -
SP11: -
SP12: - -
SP13: - -
SP14:
SP15:

ExUns: 14d · 14e ^ 15 ^ 16 ^ 17a · 17b ^ 18
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9: - - - -
SP10:
SP11:
SP12: -
SP13:
SP14: -
SP15:

Relevant External Links for YY1AP1 Gene

GeneLoc Exon Structure for
YY1AP1
ECgene alternative splicing isoforms for
YY1AP1

Expression for YY1AP1 Gene

mRNA expression in normal human tissues for YY1AP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for YY1AP1 Gene

SOURCE GeneReport for Unigene cluster for YY1AP1 Gene Hs.584927

mRNA Expression by UniProt/SwissProt for YY1AP1 Gene

Q9H869-YYAP1_HUMAN
Tissue specificity: Ubiquitous. Detected in small intestine, skeletal muscle, lung, pancreas, brain, stomach, spleen, colon and heart. Detected at very low levels in healthy liver. Highly expressed in most liver carcinomas.
genes like me logo Genes that share expressions with YY1AP1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for YY1AP1 Gene

Orthologs for YY1AP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for YY1AP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia YY1AP1 35
  • 99.64 (n)
  • 99.2 (a)
YY1AP1 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 77 (a)
ManyToMany
-- 36
  • 29 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 1 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gon4l 36
  • 25 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 62 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 36
  • 21 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 22 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii si:dkey-27c15.3 36
  • 12 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta mute 36
  • 7 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 7 (a)
ManyToMany
Species with no ortholog for YY1AP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for YY1AP1 Gene

ENSEMBL:
Gene Tree for YY1AP1 (if available)
TreeFam:
Gene Tree for YY1AP1 (if available)

Paralogs for YY1AP1 Gene

Paralogs for YY1AP1 Gene

Selected SIMAP similar genes for YY1AP1 Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with YY1AP1: view

Variants for YY1AP1 Gene

Sequence variations from dbSNP and Humsavar for YY1AP1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs7539 - 155,659,692(-) AACCT(C/G)AAGAT missense, reference, utr-variant-3-prime
rs182978 -- 155,660,671(-) CTGAA(A/G)CCCCT reference, synonymous-codon, utr-variant-3-prime, downstream-variant-500B
rs348185 -- 155,664,006(-) tttaa(A/G)acatg intron-variant
rs348186 -- 155,663,516(-) gtctc(A/G)aactc intron-variant
rs348187 -- 155,683,456(+) acagc(C/T)tggct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for YY1AP1 Gene

Variant ID Type Subtype PubMed ID
esv33869 CNV Loss 17666407
esv2718418 CNV Deletion 23290073
nsv428246 CNV Gain 18775914
nsv436522 CNV Deletion 17901297
esv2718429 CNV Deletion 23290073
nsv3054 CNV Loss 18451855

Relevant External Links for YY1AP1 Gene

HapMap Linkage Disequilibrium report
YY1AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for YY1AP1 Gene

Disorders for YY1AP1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for YY1AP1 Gene including...

Search for YY1AP1 Gene in MalaCards »

Relevant External Links for YY1AP1

Genetic Association Database (GAD)
YY1AP1
genes like me logo Genes that share disorders with YY1AP1: view

No data available for UniProtKB/Swiss-Prot for YY1AP1 Gene

Publications for YY1AP1 Gene

  1. Identification and characterization of a novel human hepatocellular carcinoma-associated gene. (PMID: 11710830) Wang Z.-X. … Wu M.-C. (Br. J. Cancer Suppl. 2001) 2 3 4 23
  2. Hepatocellular carcinoma-associated gene 2 interacts with MAD2L2. (PMID: 17541814) Li L. … Huo K. (Mol. Cell. Biochem. 2007) 3 4 23
  3. Molecular cloning and characterization of a novel gene which is highly expressed in hepatocellular carcinoma. (PMID: 12118372) Zeng J.Z. … Wu M.-C. (Oncogene 2002) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4

Products for YY1AP1 Gene

Sources for YY1AP1 Gene

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