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Aliases & Descriptions for YY1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DELTA 1, 2 | | INO80S 1, 2, 3 | | NF-E1 1, 2, 3 | | UCRBP 1, 2 | | YIN-YANG-1 1, 2 | | YY-1 3 |
| | | Descriptions |
|---|
| Delta transcription factor 3 | | INO80 complex subunit S 2, 3 | | YY1 transcription factor 2 | | Yin and Yang 1 protein 2 | | Yin and yang 1 3 |
|
| | Search outside databases for aliases for YY1 genePrevious GC identifers: GC14P098216 GC14P094520 GC14P098695 |
Summaries for YY1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for YY1: YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1. [provided by RefSeq] UniProtKB/Swiss-Prot: TYY1_HUMAN, P25490Function: Multifunctional transcription factor that exhibits positive and negative control on a large number of cellular and viral genes by binding to sites overlapping the transcription start site. May play an important role in development and differentiation. The function of YY1 as an activator or a repressor is specified by the presence of other proteins. For example it acts as a repressor in absence of adenovirus E1A protein but as an activator in its presenceGene Wiki entry for YY1 |
Genomic Location for YY1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the YY1 gene 
Entrez Gene cytogenetic band: 14q Ensembl cytogenetic band: 14q32.2 HGNC cytogenetic band: 14qYY1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure GeneLoc location for GC14P099774:
(about GC identifiers)
Start:
|
99,774,855 bp from pter |
End:
|
99,814,557 bp from pter |
Size:
|
39,703 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000014.7 NT_026437.11
| Proteins for YY1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TYY1_HUMAN, P25490 (See
protein sequence)Recommended Name: Transcriptional repressor protein YY1 Size: 414 amino acids; 44713 Da
Subunit: Interacts with YAF2 through the region encompassing the first and second zinc fingers. Interacts with INO80
Subcellular location: Nucleus matrix. Note=Associated with the nuclear matrix
PDB structure from and Proteopedia :1UBD (3D)
 1ZNM (3D)
 
Secondary accessions: Q14935Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003394.1
ENSEMBL proteins: ENSP00000262238
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/7 Gene Ontology (GO) cellular component terms (links to tree view) (see all 7
): About this table
Antibodies for YY1: Assays for YY1: | Protein
Domains/ Families for YY1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P25490
ProtoNet protein and cluster: P25490 1 Blocks protein family: IPB007086 C2H2-type zinc finger signature
UniProtKB/Swiss-Prot: TYY1_HUMAN, P25490Similarity: Belongs to the YY transcription factor familySimilarity: Contains 4 C2H2-type zinc fingers | Gene Function for YY1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003403
Applied Biosystems Silencer® siRNAs for YY1
Sigma-Aldrich siRNA for YY1  Sigma-Aldrich shRNA for YY1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003403                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003403                                  untagged cDNA clone in CMV expression vector: NM_003403 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003403
UniProtKB/Swiss-Prot: TYY1_HUMAN, P25490Function: Multifunctional transcription factor that exhibits positive and negative control on a large number of cellular and viral genes by binding to sites overlapping the transcription start site. May play an important role in development and differentiation. The function of YY1 as an activator or a repressor is specified by the presence of other proteins. For example it acts as a repressor in absence of adenovirus E1A protein but as an activator in its presenceGenatlas biochemistry entry for YY1:YY1 transcription factor,repressor/activator (Yin Yang) protein,binding to a variety of transcriptor factors,recruiting HDAC2 or HDAC3 for negative regulation of transcription. Interacting with MYC9 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Yy1):
5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
): About this table | Pathways & Interactions for YY1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for YY1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for YY1 
5/113 Interacting proteins for YY1 (P254901, 2 ENSP000002622383) via UniProtKB, MINT, and/or STRING (see all 113
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006350 | transcription |
IEA | -- | | GO:0006357 | regulation of transcription from RNA polymerase II promoter |
TAS | 1655281 | | GO:0009952 | anterior/posterior pattern formation |
IEA | -- | | GO:0048593 | camera-type eye morphogenesis |
IEA | -- | About this table
|
Drugs & Compounds for YY1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for YY1 10/15 Novoseek chemical compound relationships for YY1 gene (see all 15
)
About this table
2 PharmGKB drug compound relationships for YY1 geneAbout this table
|
Transcripts for YY1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003403
Sigma-Aldrich siRNA for YY1  Sigma-Aldrich shRNA for YY1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003403 REFSEQ mRNAs for YY1 gene: NM_003403.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003403               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003403                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003403                                  untagged cDNA clone in CMV expression vector: NM_003403  Additional cDNA sequence: AF147416.1 AK025731.1 AK026497.1 BC014138.2 BC020324.1 BC037308.1 BC051735.1 BC065366.1 BX647456.1 CR592603.1 CR611552.1 M76541.1 M77698.1 Z14077.1 19 DOTS entries: DT.99968873 DT.97783673 DT.454649 DT.97859625 DT.91896772 DT.100036764 DT.120772238 DT.445428 DT.99945655 DT.40119043 DT.87078356 DT.109199 DT.120772338 DT.438109 DT.92394371 DT.100756454 DT.100804359 DT.100830714 DT.92450425 24/829 AceView cDNA sequences (see all 829
):BE672652 BG149828 AI817036 BF061123 BM709955 CB070329 AI268411 BF056850 AI472042 AW137178 Z45953 AI612756 BE675134 BM769953 D11998 H26409 CB241815 BE675659 AI524113 D11996 AI760382 AA442032 BF055094 AW272743
highest scoring ESTs for YY1:M77698 AA039452 AA079848 AA128758 AA159300 AA279716 AA280760 AA282297 AA283923 AA287777 Unigene Cluster for YY1: YY1 transcription factor Hs.388927 [show with all ESTs]Unigene Representative Sequence: BX647456
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000262238
|
Expression for YY1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| YY1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for YY1
1 / 2 / 3 14 probe-sets matching YY1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TAACAGAAAG
SOURCE GeneReport for Unigene cluster: Hs.388927
Expression variation in blood from EXPOLDB for YY1 |
Orthologs for YY1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for YY1 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for YY1
ENSEMBL Gene Tree for YY1 | Paralogs for YY1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for YY1 gene
- YY22 ZFP422 GLI12
Pseudogenes
- 1 related pseudogene
|
SNPs/Variants for YY1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for YY1 (up to first 250kb)
|
Disorders & Mutations for YY1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600013
10/23 Novoseek disease relationships for YY1 gene (see all 23
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| retinoblastoma |
29.80 |
10 |
11118439 (5), 12588874 (1) |
| cervical cancer |
23.91 |
10 |
10385547 (3), 7927871 (1), 10466808 (1), 12526319 (1) (see all 6) |
| osteosarcoma |
23.66 |
9 |
16962318 (3), 18488713 (3), 18339860 (2) |
| tumors |
16.92 |
38 |
16784892 (4), 18218085 (4), 16314846 (3), 10385547 (3) (see all 20) |
| cancer |
16.79 |
20 |
18218085 (2), 19342874 (2), 15870067 (1), 16314846 (1) (see all 12) |
| carcinoma embryonal |
7.86 |
1 |
16003908 (1) |
| hypertrophy |
7.10 |
4 |
18632988 (2) |
| invasive cancer |
1.50 |
1 |
10385547 (1) |
| cervical intraepithelial neoplasia |
0.28 |
2 |
17549406 (2) |
| neurological disorders |
0.00 |
1 |
18485096 (1) |
About this table
1 PharmGKB disease relationship for YY1 geneAbout this table
Tumor Gene Database: YY1
|
Medical News for YY1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for YY1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/311 PubMed articles for YY1 gene (see all 311
):- Transcriptional repression by YY1, a human GLI-Kruppel-related protein, and relief of repression by adenovirus E1A protein. (PubMed id 1655281)2, 3, 4 Shi Y.... Shenk T. (1991)
- Isolation of a candidate repressor/activator, NF-E1 (YY-1, delta), that binds to the immunoglobulin kappa 3' enhancer and the immunoglobulin heavy-chain mu E1 site. (PubMed id 1946405)1, 3, 4 Park K. and Atchison M. (1991)
- YY1 functions with INO80 to activate transcription. (PubMed id 17721549)1, 3, 4 Cai Y....Conaway J.W. (2007)
- Yeast two-hybrid cloning of a novel zinc finger protein that interacts with the multifunctional transcription factor YY1. (PubMed id 9016636)1, 3, 4 Kalenik J.L.... Lee T.-C. (1997)
- Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator. (PubMed id 8942976)1, 3, 4 Houbaviy H.B.... Burley S.K. (1996)
- Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220)3, 4 Nousiainen M.... Koerner R. (2006)
- Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)3, 4 Beausoleil S.A....Gygi S.P. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Design, synthesis and structure of a zinc finger with an artificial beta-turn. (PubMed id 9642075)3, 4 Viles J.H.... Thornton J.M. (1998)
- Targeting of the YY1 transcription factor to the nucleolus and the nuclear matrix in situ: the C-terminus is a principal determinant for nuclear trafficking. (PubMed id 9493912)3, 4 McNeil S.... Stein G.S. (1998)
|
Search for YY1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing YY1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing YY1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing YY1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for YY1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for YY1:

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