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Aliases for YTHDF3-AS1 Gene

Subcategory (RNA class) for YTHDF3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for YTHDF3-AS1 Gene

  • YTHDF3 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for YTHDF3-AS1 Gene

ORGUL Members for YTHDF3-AS1 Gene

Previous GeneCards Identifiers for YTHDF3-AS1 Gene

  • GC08M064080

Summaries for YTHDF3-AS1 Gene

GeneCards Summary for YTHDF3-AS1 Gene

YTHDF3-AS1 (YTHDF3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for YTHDF3-AS1 Gene

Genomics for YTHDF3-AS1 Gene

Regulatory Elements for YTHDF3-AS1 Gene

Enhancers for YTHDF3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F063166 1.4 FANTOM5 ENCODE 6.6 +0.0 19 4.0 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF143 YTHDF3 YTHDF3-AS1 GC08P063153 GC08P063154 GC08P063155 GC08P063156 GC08P063157 GC08P063158 PIR39522
GH08F063191 1 Ensembl ENCODE 5.4 -28.6 -28559 10.8 EBF1 RELA GTF3C2 ZNF316 POLR2A CBX5 ZNF143 TRIM24 NFIA MTA2 YTHDF3-AS1 ENSG00000261542 YTHDF3
GH08F063218 1.1 Ensembl ENCODE 4.7 -52.4 -52438 4.6 PKNOX1 SIN3A BRCA1 RAD21 ZEB1 RFX5 ZNF366 RCOR1 FOS ZNF654 YTHDF3-AS1 ENSG00000261542 RN7SL135P
GH08F063316 0.5 Ensembl ENCODE 5.7 -149.1 -149122 2.3 YTHDF3-AS1 LOC105375873 IFITM8P
GH08F063165 0.6 ENCODE 0.8 +2.3 2286 0.5 CTCF ZNF654 CEBPB CEBPG RAD21 ATF3 SMC3 ZNF143 YTHDF3-AS1 GC08P063153 GC08P063154 GC08P063155 GC08P063156 GC08P063157 GC08P063158 PIR39522
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around YTHDF3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for YTHDF3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001393139 -758 4001 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF143

Genomic Location for YTHDF3-AS1 Gene

Chromosome:
8
Start:
63,167,725 bp from pter
End:
63,168,442 bp from pter
Size:
718 bases
Orientation:
Minus strand

Genomic View for YTHDF3-AS1 Gene

Genes around YTHDF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
YTHDF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for YTHDF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for YTHDF3-AS1 Gene

Proteins for YTHDF3-AS1 Gene

Post-translational modifications for YTHDF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for YTHDF3-AS1 Gene

Domains & Families for YTHDF3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for YTHDF3-AS1 Gene

Function for YTHDF3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for YTHDF3-AS1 Gene

Localization for YTHDF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for YTHDF3-AS1 Gene

Pathways & Interactions for YTHDF3-AS1 Gene

SuperPathways for YTHDF3-AS1 Gene

No Data Available

Interacting Proteins for YTHDF3-AS1 Gene

Gene Ontology (GO) - Biological Process for YTHDF3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for YTHDF3-AS1 Gene

Transcripts for YTHDF3-AS1 Gene

mRNA/cDNA for YTHDF3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for YTHDF3-AS1 Gene

No ASD Table

Relevant External Links for YTHDF3-AS1 Gene

GeneLoc Exon Structure for
YTHDF3-AS1
ECgene alternative splicing isoforms for
YTHDF3-AS1

Expression for YTHDF3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for YTHDF3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for YTHDF3-AS1 Gene

This gene is overexpressed in Testis (x4.1).
genes like me logo Genes that share expression patterns with YTHDF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for YTHDF3-AS1 Gene

Orthologs for YTHDF3-AS1 Gene

Evolution for YTHDF3-AS1 Gene

ENSEMBL:
Gene Tree for YTHDF3-AS1 (if available)
TreeFam:
Gene Tree for YTHDF3-AS1 (if available)

No data available for Orthologs for YTHDF3-AS1 Gene

Paralogs for YTHDF3-AS1 Gene

No data available for Paralogs for YTHDF3-AS1 Gene

Variants for YTHDF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for YTHDF3-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs111428511 -- 63,168,446(+) CCGAC(C/G)CGCTC upstream-variant-2KB
rs113200296 -- 63,169,703(+) TGTTA(C/T)GTAAC intron-variant, upstream-variant-2KB
rs115731343 -- 63,168,448(+) GACGC(C/G)CTCCC upstream-variant-2KB
rs116794331 -- 63,168,088(+) TGCAC(A/G)GGCAG nc-transcript-variant, upstream-variant-2KB
rs11785601 -- 63,169,571(+) CAGAA(C/T)TTCGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for YTHDF3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv611448 CNV loss 21841781

Relevant External Links for YTHDF3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
YTHDF3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for YTHDF3-AS1 Gene

Disorders for YTHDF3-AS1 Gene

Relevant External Links for YTHDF3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
YTHDF3-AS1

No disorders were found for YTHDF3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for YTHDF3-AS1 Gene

Publications for YTHDF3-AS1 Gene

No publications were found for YTHDF3-AS1 Gene.

Products for YTHDF3-AS1 Gene

Sources for YTHDF3-AS1 Gene

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