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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

YPEL4 Gene

protein-coding GIFtS: 48
GCID: GC11M057412

yippee-like 4 (Drosophila)

Explore 3 diseases affiliated with
YPEL4 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Yippee-Like 4 (Drosophila)¹ ²
FLJ30213¹
Protein Yippee-Like 4²

External Ids:	HGNC: 18328¹	Entrez Gene: 219539²	Ensembl: ENSG00000166793⁷	OMIM: 609725⁵	UniProtKB: Q96NS1³

Export aliases for YPEL4 gene to outside databases

Previous GC identifers: GC11M057169 GC11M053761

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000011.9 NC_018922.1 NT_167190.1

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the YPEL4 gene promoter:
C/EBPbeta MIF-1 Arnt AREB6 CREB IRF-2 deltaCREB FOXJ2 (long isoform) IRF-7A FOXJ2
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: YPEL4 promoter sequence

Search SABiosciences Chromatin IP Primers for YPEL4

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat YPEL4

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q12.1 Ensembl cytogenetic band: 11q12.1 HGNC cytogenetic band: 11q12

YPEL4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
YPEL4 gene location

GeneLoc information about chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11M057412: view genomic region (about GC identifiers)

Start:	57,412,560 bp from pter	End:	57,417,417 bp from pter
Size:	4,858 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: YPEL4_HUMAN, Q96NS1 (See protein sequence)

Recommended Name: Protein yippee-like 4

Size: 127 amino acids; 14301 Da

Subcellular location: Nucleus, nucleolus

Secondary accessions: B3KW92 Q2M3U7 Q65Z98

Explore the universe of human proteins at neXtProt for YPEL4: NX_Q96NS1

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q96NS1

YPEL4 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_659445.1

ENSEMBL proteins:

ENSP00000434238 ENSP00000432648 ENSP00000300022 ENSP00000432165 ENSP00000432826

ENSP00000438126

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	Uscn Proteins for YPEL4

Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005730	nucleolus	IEA	--

YPEL4 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

YPEL4 for domains About GeneDecksing

1 InterPro domain/family:

IPR004910 Yippee

Graphical View of Domain Structure for InterPro Entry Q96NS1

ProtoNet protein and cluster: Q96NS1

1 Blocks protein family: IPB004910 Yippee-like protein

UniProtKB/Swiss-Prot: YPEL4_HUMAN, Q96NS1

Similarity: Belongs to the yippee family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

miRNA Products:		Browse 3'-UTR reporter clones for miRNA target validation Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat YPEL4
		8/24 QIAGEN miScript miRNA Assays for microRNAs that regulate YPEL4 (see all 24):
		hsa-miR-106a hsa-miR-658 hsa-miR-487a hsa-miR-485-3p hsa-miR-93 hsa-miR-3121-3p hsa-miR-548c-3p hsa-miR-17

		SwitchGear 3'UTR luciferase reporter plasmid: YPEL4 3' UTR sequence

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In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for YPEL4

1 GenomeRNAi human phenotype for YPEL4:

Increased gamma-H2AX phosphory

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for YPEL4

5/12 Interacting proteins for YPEL4 (Q96NS1³) via UniProtKB, MINT, STRING, and/or I2D (see all 12)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
CAPZB	P47756³	I2D: score=5
BRAP	Q7Z569³	I2D: score=4
CCT2	P78371³	I2D: score=4
CCT3	P49368³	I2D: score=4
MAEA	Q7L5Y9³	I2D: score=4

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for YPEL4
Search CenterWatch for drugs/clinical trials and news about YPEL4

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for YPEL4 gene:

NM_145008.2

Unigene Cluster for YPEL4:

Yippee-like 4 (Drosophila)

Hs.135978 [show with all ESTs]

Unigene Representative Sequence: AK124577

11 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000528797 ENST00000532314 ENST00000524669 ENST00000300022(uc001nkv.4 uc009ymk.3)

ENST00000524592 ENST00000534711 ENST00000534810 ENST00000529776 ENST00000533025

ENST00000531442 ENST00000544993

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		hsa-miR-106a hsa-miR-658 hsa-miR-487a hsa-miR-485-3p hsa-miR-93 hsa-miR-3121-3p hsa-miR-548c-3p hsa-miR-17

		SwitchGear 3'UTR luciferase reporter plasmid: YPEL4 3' UTR sequence

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		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat YPEL4
		Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat YPEL4

Additional cDNA sequence:

AB098738.1 AK054775.1 AK054967.1 AK124577.1 BC029228.1 BC064995.1 BC104781.1 BC111012.1

BC112119.1

7 DOTS entries:

DT.307333 DT.91868052 DT.100018472 DT.120699125 DT.307334 DT.97838041 DT.100738138

24/40 AceView cDNA sequences (see all 40):

BC064995 AK124577 BE673815 BC029228 BU688993 BM669646 BM698861 BX106972

BU732730 AK054775 NM_145008 BM709355 AI703426 BI489821 BM926759 CD368372

BF874997 AK054967 BF842399 AI216256 W00827 BM922142 BI915226 BM922128

GeneLoc Exon Structure

5/6 Alternative Splicing Database (ASD) splice patterns (SP) for YPEL4 (see all 6) About this scheme

ExUns:	1a	·	1b	^	2a	·	2b	·	2c	·	2d	^	3a	·	3b	^	4a	·	4b	^	5
SP1:					-		-				-				-
SP2:											-				-
SP3:					-		-				-
SP4:											-
SP5:											-		-		-

ECgene alternative splicing isoforms for YPEL4

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

YPEL4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GACCACAGAA

About this image

YPEL4 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

2 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Brain

Neural Tube

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 2 LifeMap Cells

Name

Category

PureStem™ mesenchymal progenitor 7PEND24 (Embryonic Progenitor Cell)

Cartilage, Neural Crest

Posterior foregut-like cells (A scalable, suspensi...)

See YPEL4 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for YPEL4

SOURCE GeneReport for Unigene cluster: Hs.135978

UniProtKB/Swiss-Prot: YPEL4_HUMAN, Q96NS1

Tissue specificity: Widely expressed. Detected adult brain, lung, colon, small intestine and ovary, and in fetal brain,

lung, liver and spleen

SABiosciences Custom PCR Arrays for YPEL4

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In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for YPEL4

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for YPEL4 gene from 8/29 species (see all 29) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	LOC100858042¹	protein yippee-like 4-like	83.06(n) 89.17(a)		100858042 XM_003641331.1 XP_003641379.1
lizard (Anolis carolinensis)	Reptilia	YPEL4⁶	--	94(a)	1 ↔ 1	1(91609150-91614366)
zebrafish (Danio rerio)	Actinopterygii	ypel3¹	yippee-like 3	78.57(n) 84.82(a)		368214 NM_212790.1 NP_997955.1
fruit fly (Drosophila melanogaster)	Insecta	CG15309⁶	--	75(a)	1 → many	X(10099325-10106407)
worm (Caenorhabditis elegans)	Secernentea	F37A8.5⁶	Protein yippee-like F37A8.5	65(a)	1 → many	III(3956604-3957455)
baker's yeast (Saccharomyces cerevisiae)	Saccharomycetes	MOH1¹	Moh1p	52.28(n) 48.42(a)		852231 NP_009504.1
thale cress (Arabidopsis thaliana)	eudicotyledons	AT2G40110¹	yippee-like protein	60(n) 58.89(a)		818600 NM_129569.4 NP_181540.1
rice (Oryza sativa)	Liliopsida	AK121352.1²	--	73.23(n)		AK121352.1

ENSEMBL Gene Tree for YPEL4 (if available)
TreeFam Gene Tree for YPEL4 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for YPEL4 gene

YPEL3² YPEL1² YPEL2² YPEL5²

4 SIMAP similar genes for YPEL4 using alignment to 4 protein entries: YPEL4_HUMAN (see all proteins):

YPEL2 YPEL1 YPEL3 YPEL5

YPEL4 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 11 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs1798177^1,2	C,F,O,A,H,	--	57412150(+)	`GCTGAT/CTGATT`	1	--	int¹		28		NS EA NA WA CSA	2496
rs111713924^1,2		--	57412375(+)	`ACTAAG/CGCAAA`	1	--	int¹		2		CSA WA	119
rs186611627^1,2		--	57412466(+)	`GTATAA/CAGGGA`	1	--	int¹		0	--	--	--	--
rs191015608^1,2		--	57412629(+)	`TCATTC/TGCTGG`	1	--	ut3¹		0	--	--	--	--
rs147310024^1,2		--	57412932(+)	`GCACTC/GAAGTC`	1	--	ut3¹		0	--	--	--	--
rs140904047^1,2		--	57412947(+)	`TCCCTA/GCAAAT`	1	--	ut3¹		0	--	--	--	--
rs2076895^1,2	C,F,A,H,	--	57412972(+)	`TCATCC/TTCAGA`	1	--	ut3¹ ese³		10		NS EA NA WA	1202
rs78331237^1,2	C	--	57413025(+)	`CCCAAG/TTCTTT`	1	--	ut3¹		0	--	--	--	--
rs59112417^1,2	C,	--	57413080(+)	`CCAAGG/ATTTGT`	1	--	ut3¹		1		WA	2
rs187580312^1,2		--	57413111(+)	`GGTGGA/GGCAAA`	1	--	ut3¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for YPEL4 (57412560 - 57417417 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for YPEL4
1 CNV: 4744

SABiosciences Cancer Mutation PCR Assays

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing YPEL4

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

YPEL4 for disorders           About GeneDecksing

OMIM gene information: 609725    OMIM disorders: --

3 diseases for YPEL4:    About MalaCards

digeorge syndrome breast cancer malaria

Human Genome Epidemiology (HuGE) Navigator: YPEL4 (1 document)

Export disorders for YPEL4 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for YPEL4 gene integrated from 9 sources:
(articles sorted by number of sources associating them with YPEL4)

Utopia: connect your pdf to the dynamic
world of online information

Identification and characterization of a novel gene family YPEL in a wide spectrum of eukaryotic species. (PubMed id 15556292)^{1, 2} Hosono K.... Shimizu N. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Centrosome-related genes, genetic variation, and risk of breast cancer. (PubMed id 20508983)¹ Olson J.E....Couch F.J. (2010)
MVP interacts with YPEL4 and inhibits YPEL4-mediated activities of the ERK signal pathway. (PubMed id 20555386)¹ Liang P....Wu X. (2010)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 219539	HGNC: 18328	AceView: YPEL4	Ensembl:ENSG00000166793	euGenes: HUgn219539
ECgene: YPEL4	H-InvDB: YPEL4

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for YPEL4	Pharmacogenomics, SNPs, Pathways

Intellectual Property for YPEL4 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for YPEL4 gene:
Search GeneIP for patents involving YPEL4

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat YPEL4

GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

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Hot genes Disease genes YPEL4 gene at Home site.

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YPEL4 Gene

yippee-like 4 (Drosophila)

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YPEL4 Gene

yippee-like 4 (Drosophila)

Aliasesfor YPEL4 gene

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Genomic Viewsfor YPEL4 gene

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