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Aliases for YPEL1 Gene

Aliases for YPEL1 Gene

  • Yippee Like 1 2 3 5
  • Yippee (Drosophila) Homolog-Like 1 2
  • DiGeorge Syndrome-Related Protein 3
  • Yippee-Like 1 (Drosophila) 2
  • Yippee-Like 1 3
  • FKSG3 3

External Ids for YPEL1 Gene

Previous GeneCards Identifiers for YPEL1 Gene

  • GC22M018753
  • GC22M020379
  • GC22M020377
  • GC22M020381
  • GC22M022051
  • GC22M005009

Summaries for YPEL1 Gene

Entrez Gene Summary for YPEL1 Gene

  • This gene is located in the region associated with DiGeorge syndrome on chromosome 22. The encoded protein localizes to the centrosome and nucleolus and may play a role in the regulation of cell division. [provided by RefSeq, Feb 2015]

GeneCards Summary for YPEL1 Gene

YPEL1 (Yippee Like 1) is a Protein Coding gene. Diseases associated with YPEL1 include Digeorge Syndrome. An important paralog of this gene is YPEL2.

UniProtKB/Swiss-Prot for YPEL1 Gene

  • May play a role in epithelioid conversion of fibroblasts.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for YPEL1 Gene

Genomics for YPEL1 Gene

Regulatory Elements for YPEL1 Gene

Enhancers for YPEL1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around YPEL1 on UCSC Golden Path with GeneCards custom track

Promoters for YPEL1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around YPEL1 on UCSC Golden Path with GeneCards custom track

Genomic Location for YPEL1 Gene

Chromosome:
22
Start:
21,697,536 bp from pter
End:
21,735,834 bp from pter
Size:
38,299 bases
Orientation:
Minus strand

Genomic View for YPEL1 Gene

Genes around YPEL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
YPEL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for YPEL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for YPEL1 Gene

Proteins for YPEL1 Gene

  • Protein details for YPEL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O60688-YPEL1_HUMAN
    Recommended name:
    Protein yippee-like 1
    Protein Accession:
    O60688
    Secondary Accessions:
    • Q65ZA1
    • Q6GLI6

    Protein attributes for YPEL1 Gene

    Size:
    119 amino acids
    Molecular mass:
    13575 Da
    Quaternary structure:
    No Data Available

neXtProt entry for YPEL1 Gene

Proteomics data for YPEL1 Gene at MOPED

Post-translational modifications for YPEL1 Gene

No Post-translational modifications

Other Protein References for YPEL1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Abcam antibodies for YPEL1

No data available for DME Specific Peptides for YPEL1 Gene

Domains & Families for YPEL1 Gene

Gene Families for YPEL1 Gene

Protein Domains for YPEL1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for YPEL1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O60688

UniProtKB/Swiss-Prot:

YPEL1_HUMAN :
  • Contains 1 Yippee domain.
  • Belongs to the yippee family.
Domain:
  • Contains 1 Yippee domain.
Family:
  • Belongs to the yippee family.
genes like me logo Genes that share domains with YPEL1: view

Function for YPEL1 Gene

Molecular function for YPEL1 Gene

UniProtKB/Swiss-Prot Function:
May play a role in epithelioid conversion of fibroblasts.
genes like me logo Genes that share phenotypes with YPEL1: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for YPEL1 Gene

Localization for YPEL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for YPEL1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for YPEL1 Gene COMPARTMENTS Subcellular localization image for YPEL1 gene
Compartment Confidence
nucleus 4
extracellular 3
mitochondrion 2
cytosol 1

No data available for Gene Ontology (GO) - Cellular Components for YPEL1 Gene

Pathways & Interactions for YPEL1 Gene

SuperPathways for YPEL1 Gene

No Data Available

Interacting Proteins for YPEL1 Gene

Gene Ontology (GO) - Biological Process for YPEL1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for YPEL1 Gene

Drugs & Compounds for YPEL1 Gene

No Compound Related Data Available

Transcripts for YPEL1 Gene

mRNA/cDNA for YPEL1 Gene

Unigene Clusters for YPEL1 Gene

Yippee-like 1 (Drosophila):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for YPEL1 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6
SP1: - -
SP2: -
SP3:
SP4: -

Relevant External Links for YPEL1 Gene

GeneLoc Exon Structure for
YPEL1
ECgene alternative splicing isoforms for
YPEL1

Expression for YPEL1 Gene

mRNA expression in normal human tissues for YPEL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for YPEL1 Gene

This gene is overexpressed in Testis (x17.3).

SOURCE GeneReport for Unigene cluster for YPEL1 Gene Hs.517436

genes like me logo Genes that share expression patterns with YPEL1: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for YPEL1 Gene

Orthologs for YPEL1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for YPEL1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia YPEL1 35
  • 89.92 (n)
  • 99.16 (a)
YPEL1 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia YPEL1 35
  • 91.6 (n)
  • 99.16 (a)
YPEL1 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ypel1 35
  • 90.4 (n)
  • 99.15 (a)
Ypel1 16
Ypel1 36
  • 99 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia YPEL1 35
  • 99.44 (n)
  • 100 (a)
YPEL1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ypel1 35
  • 89.55 (n)
  • 99.15 (a)
oppossum
(Monodelphis domestica)
Mammalia YPEL1 36
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia YPEL1 36
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves YPEL1 35
  • 84.59 (n)
  • 100 (a)
lizard
(Anolis carolinensis)
Reptilia YPEL1 36
  • 100 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.9858 35
ypel1 35
  • 82.63 (n)
  • 100 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.23559 35
zebrafish
(Danio rerio)
Actinopterygii ypel1 35
  • 84.03 (n)
  • 100 (a)
ypel3 35
ypel1 36
  • 100 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG15309 37
  • 87 (a)
CG15309 36
  • 88 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F37A8.5 37
  • 87 (a)
F37A8.5 36
  • 73 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MOH1 36
  • 36 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G27745 35
  • 61.56 (n)
  • 59.18 (a)
rice
(Oryza sativa)
Liliopsida Os11g0551800 35
  • 62.24 (n)
  • 62.24 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 79 (a)
OneToMany
Species with no ortholog for YPEL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for YPEL1 Gene

ENSEMBL:
Gene Tree for YPEL1 (if available)
TreeFam:
Gene Tree for YPEL1 (if available)

Paralogs for YPEL1 Gene

Paralogs for YPEL1 Gene

(4) SIMAP similar genes for YPEL1 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for YPEL1 Gene

genes like me logo Genes that share paralogs with YPEL1: view

Variants for YPEL1 Gene

Sequence variations from dbSNP and Humsavar for YPEL1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1859 -- 21,701,051(+) GTCAC(C/T)AGATG nc-transcript-variant, utr-variant-3-prime
rs1860 -- 21,701,105(-) TCCTT(C/T)GAATG nc-transcript-variant, utr-variant-3-prime
rs2236643 -- 21,704,066(+) CTGCA(A/G)GCTGT intron-variant, nc-transcript-variant
rs7289600 -- 21,731,207(+) aaccc(A/G)tctct intron-variant
rs2329826 -- 21,698,818(+) CTGCA(C/T)GCGAG nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for YPEL1 Gene

Variant ID Type Subtype PubMed ID
nsv7350 OTHER Inversion 18451855
nsv914458 CNV Loss 21882294
dgv4881n71 CNV Loss 21882294
dgv4882n71 CNV Loss 21882294
nsv510804 CNV Loss 20534489
nsv191511 CNV Loss 16902084
esv2678585 CNV Deletion 23128226

Variation tolerance for YPEL1 Gene

Residual Variation Intolerance Score: 45% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for YPEL1 Gene

Disorders for YPEL1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for YPEL1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
digeorge syndrome
  • digeorge sequence
- elite association - COSMIC cancer census association via MalaCards
Search YPEL1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for YPEL1

Genetic Association Database (GAD)
YPEL1
Human Genome Epidemiology (HuGE) Navigator
YPEL1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
YPEL1
genes like me logo Genes that share disorders with YPEL1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for YPEL1 Gene

Publications for YPEL1 Gene

  1. Identification and characterization of a novel gene family YPEL in a wide spectrum of eukaryotic species. (PMID: 15556292) Hosono K. … Shimizu N. (Gene 2004) 2 3 4 67
  2. Ypel1: a novel nuclear protein that induces an epithelial-like morphology in fibroblasts. (PMID: 11473580) Farlie P. … Newgreen D. (Genes Cells 2001) 2 3
  3. Interaction of amyotrophic lateral sclerosis/frontotemporal lobar degeneration-associated fused-in-sarcoma with proteins involved in metabolic and protein degradation pathways. (PMID: 25192599) Wang T. … Xu J. (Neurobiol. Aging 2015) 3
  4. Centrosome-related genes, genetic variation, and risk of breast cancer. (PMID: 20508983) Olson J.E. … Couch F.J. (Breast Cancer Res. Treat. 2011) 3
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3

Products for YPEL1 Gene

Sources for YPEL1 Gene

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