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Aliases for YME1L1 Gene

Aliases for YME1L1 Gene

  • YME1-Like 1 ATPase 2 3
  • YME1L 3 4 6
  • PAMP 3 4 6
  • Presenilin-Associated Metalloprotease 3 4
  • YME1-Like Protein 1 3 4
  • Meg-4 3 4
  • ATP-Dependent Metalloprotease FtsH1 Homolog 3
  • ATP-Dependent Zinc Metalloprotease YME1L1 3
  • ATP-Dependent Metalloprotease YME1L1 3
  • ATP-Dependent Metalloprotease FtsH1 4
  • YME1-Like 1 (S. Cerevisiae) 2
  • YME1 (S.Cerevisiae)-Like 1 2
  • EC 3.4.24.- 4
  • EC 3.4.24 64
  • FTSH1 4
  • FTSH 3
  • MEG4 3

External Ids for YME1L1 Gene

Summaries for YME1L1 Gene

Entrez Gene Summary for YME1L1 Gene

  • The protein encoded by this gene is the human ortholog of yeast mitochondrial AAA metalloprotease, Yme1p. It is localized in the mitochondria and can functionally complement a yme1 disruptant yeast strain. It is proposed that this gene plays a role in mitochondrial protein metabolism and could be involved in mitochondrial pathologies. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011]

GeneCards Summary for YME1L1 Gene

YME1L1 (YME1-Like 1 ATPase) is a Protein Coding gene. Diseases associated with YME1L1 include pulmonary valve insufficiency. GO annotations related to this gene include metalloendopeptidase activity and nucleoside-triphosphatase activity.

UniProtKB/Swiss-Prot for YME1L1 Gene

  • Putative ATP-dependent protease which plays a role in mitochondrial protein metabolism. Ensures cell proliferation, maintains normal cristae morphology and complex I respiration activity, promotes antiapoptotic activity and protects mitochondria from the accumulation of oxidatively damaged membrane proteins. Requires to control the accumulation of nonassembled respiratory chain subunits (NDUFB6, OX4 and ND1). Seems to act in the processing of OPA1.

Gene Wiki entry for YME1L1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for YME1L1 Gene

Genomics for YME1L1 Gene

Genomic Location for YME1L1 Gene

Start:
27,110,111 bp from pter
End:
27,155,266 bp from pter
Size:
45,156 bases
Orientation:
Minus strand

Genomic View for YME1L1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for YME1L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for YME1L1 Gene

Regulatory Elements for YME1L1 Gene

Transcription factor binding sites by QIAGEN in the YME1L1 gene promoter:

Proteins for YME1L1 Gene

  • Protein details for YME1L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96TA2-YMEL1_HUMAN
    Recommended name:
    ATP-dependent zinc metalloprotease YME1L1
    Protein Accession:
    Q96TA2
    Secondary Accessions:
    • B4DNM1
    • D3DRV8
    • D3DRV9
    • Q5T8D9
    • Q9H1Q0
    • Q9UMR9

    Protein attributes for YME1L1 Gene

    Size:
    773 amino acids
    Molecular mass:
    86455 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Note=Binds 1 zinc ion per subunit.;
    Quaternary structure:
    • Exists in several complexes of 600-1100 kDa.

    Alternative splice isoforms for YME1L1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for YME1L1 Gene

Proteomics data for YME1L1 Gene at MOPED

Selected DME Specific Peptides for YME1L1 Gene

Post-translational modifications for YME1L1 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys237, Lys253, Lys258, Lys269, Lys363, Lys385, Lys446, Lys524, and Lys568

Domains for YME1L1 Gene

Gene Families for YME1L1 Gene

HGNC:
  • AATP :ATPases / AAA-type

UniProtKB/Swiss-Prot:

YMEL1_HUMAN
Family:
  • In the N-terminal section; belongs to the AAA ATPase family.:
    • Q96TA2
  • In the C-terminal section; belongs to the peptidase M41 family.:
    • Q96TA2
genes like me logo Genes that share domains with YME1L1: view

Function for YME1L1 Gene

Molecular function for YME1L1 Gene

UniProtKB/Swiss-Prot Function: Putative ATP-dependent protease which plays a role in mitochondrial protein metabolism. Ensures cell proliferation, maintains normal cristae morphology and complex I respiration activity, promotes antiapoptotic activity and protects mitochondria from the accumulation of oxidatively damaged membrane proteins. Requires to control the accumulation of nonassembled respiratory chain subunits (NDUFB6, OX4 and ND1). Seems to act in the processing of OPA1.

Enzyme Numbers (IUBMB) for YME1L1 Gene

Gene Ontology (GO) - Molecular Function for YME1L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004222 metalloendopeptidase activity IEA --
GO:0005524 ATP binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with YME1L1: view

Phenotypes for YME1L1 Gene

GenomeRNAi human phenotypes for YME1L1:
genes like me logo Genes that share phenotypes with YME1L1: view

miRNA for YME1L1 Gene

miRTarBase miRNAs that target YME1L1

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for YME1L1 Gene

Localization for YME1L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for YME1L1 Gene

Mitochondrion inner membrane.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for YME1L1 Gene COMPARTMENTS Subcellular localization image for YME1L1 gene
Compartment Confidence
mitochondrion 5
chloroplast 3
cytosol 3
plasma membrane 2
extracellular 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for YME1L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion --
GO:0005743 mitochondrial inner membrane IDA 22262461
GO:0016020 membrane IDA 19946888
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with YME1L1: view

Pathways for YME1L1 Gene

SuperPathways for YME1L1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for YME1L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis --
GO:0006515 misfolded or incompletely synthesized protein catabolic process IMP 22262461
GO:0007005 mitochondrion organization IMP 22262461
GO:0008283 cell proliferation IMP 22262461
genes like me logo Genes that share ontologies with YME1L1: view

No data available for Pathways by source for YME1L1 Gene

Compounds for YME1L1 Gene

(1) Novoseek inferred chemical compound relationships for YME1L1 Gene

Compound -log(P) Hits PubMed IDs
atp 10.1 3
genes like me logo Genes that share compounds with YME1L1: view

Transcripts for YME1L1 Gene

Unigene Clusters for YME1L1 Gene

YME1-like 1 (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for YME1L1 Gene

No ASD Table

Relevant External Links for YME1L1 Gene

GeneLoc Exon Structure for
YME1L1
ECgene alternative splicing isoforms for
YME1L1

Expression for YME1L1 Gene

mRNA expression in normal human tissues for YME1L1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for YME1L1 Gene

SOURCE GeneReport for Unigene cluster for YME1L1 Gene Hs.74647

mRNA Expression by UniProt/SwissProt for YME1L1 Gene

Q96TA2-YMEL1_HUMAN
Tissue specificity: High expression in cardiac and skeletal muscle mitochondria.
genes like me logo Genes that share expressions with YME1L1: view

Orthologs for YME1L1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for YME1L1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia YME1L1 36
  • 99.66 (n)
  • 99.61 (a)
YME1L1 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia YME1L1 36
  • 92.42 (n)
  • 96.97 (a)
YME1L1 37
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia YME1L1 36
  • 92.26 (n)
  • 95.94 (a)
YME1L1 37
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Yme1l1 36
  • 89.09 (n)
  • 94.13 (a)
Yme1l1 16
Yme1l1 37
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia YME1L1 37
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia YME1L1 37
  • 93 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100910779 36
  • 90.86 (n)
  • 96.52 (a)
chicken
(Gallus gallus)
Aves YME1L1 36
  • 77.08 (n)
  • 81.37 (a)
YME1L1 37
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia YME1L1 37
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia yme1l1 36
  • 74.83 (n)
  • 82.8 (a)
zebrafish
(Danio rerio)
Actinopterygii yme1l1a 37
  • 71 (a)
OneToMany
yme1l1b 36
  • 69.41 (n)
  • 79.47 (a)
yme1l1b 37
  • 68 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009973 36
  • 57.36 (n)
  • 58.3 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG3499 36
  • 57.07 (n)
  • 56.12 (a)
CG3499 37
  • 44 (a)
OneToOne
CG3499 38
  • 54 (a)
worm
(Caenorhabditis elegans)
Secernentea ymel-1 36
  • 58.55 (n)
  • 53.27 (a)
ymel-1 37
  • 39 (a)
OneToOne
M03C11.5 38
  • 55 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YME1 37
  • 36 (a)
OneToOne
YME1 39
wheat
(Triticum aestivum)
Liliopsida Ta.3718 36
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 43 (a)
OneToOne
Species with no ortholog for YME1L1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for YME1L1 Gene

ENSEMBL:
Gene Tree for YME1L1 (if available)
TreeFam:
Gene Tree for YME1L1 (if available)

Paralogs for YME1L1 Gene

Selected SIMAP similar genes for YME1L1 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for YME1L1 Gene

genes like me logo Genes that share paralogs with YME1L1: view

No data available for Paralogs for YME1L1 Gene

Variants for YME1L1 Gene

Sequence variations from dbSNP and Humsavar for YME1L1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs9833 -- 27,111,932(-) GAATA(C/T)AAGTA utr-variant-3-prime
rs728691 -- 27,139,200(+) ATATA(C/T)ATATA intron-variant
rs728692 -- 27,139,495(+) TACTA(A/G)CAGCA intron-variant
rs788208 -- 27,146,756(+) GACAC(A/G)GATTA intron-variant
rs788209 -- 27,145,787(+) GACAT(A/C)GGTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for YME1L1 Gene

Variant ID Type Subtype PubMed ID
esv2664616 CNV Deletion 23128226
esv2422253 CNV Deletion 17116639

Relevant External Links for YME1L1 Gene

HapMap Linkage Disequilibrium report
YME1L1

Disorders for YME1L1 Gene

(1) University of Copenhagen DISEASES for YME1L1 Gene

Relevant External Links for YME1L1

Genetic Association Database (GAD)
YME1L1
Human Genome Epidemiology (HuGE) Navigator
YME1L1
genes like me logo Genes that share disorders with YME1L1: view

No data available for UniProtKB/Swiss-Prot for YME1L1 Gene

Publications for YME1L1 Gene

  1. Identification and characterization of YME1L1, a novel paraplegin- related gene. (PMID: 10843804) Coppola M. … Incerti B. (Genomics 2000) 3 4 23
  2. YME1L controls the accumulation of respiratory chain subunits and is required for apoptotic resistance, cristae morphogenesis and cell proliferation. (PMID: 22262461) Stiburek L. … Zeman J. (Mol. Biol. Cell 2012) 2 3 4
  3. The human homologue of the yeast mitochondrial AAA metalloprotease Yme1p complements a yeast yme1 disruptant. (PMID: 10930580) Shah Z.H. … Jacobs H.T. (FEBS Lett. 2000) 3 23
  4. Metalloprotease-mediated OPA1 processing is modulated by the mitochondrial membrane potential. (PMID: 18076378) Guillery O. … Rojo M. (Biol. Cell 2008) 4 23
  5. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4

Products for YME1L1 Gene

Sources for YME1L1 Gene

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