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Aliases & Descriptions for YME1L1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 3.4.24.- 3 FTSH 2 FTSH1 3 MEG4 2 Meg-4 3 OTTHUMP00000019360 2 OTTHUMP00000019361 2 PAMP 2 , 3 , 5 YME1L 2 , 3 , 5
Descriptions ATP-dependent metalloprotease FtsH1 3 ATP-dependent metalloprotease FtsH1 homolog 2 Presenilin-associated metalloprotease 3 YME1 (S.cerevisiae)-like 1 1 YME1-like 1 2 YME1-like 1 (S. cerevisiae) 2 YME1-like protein 1 3
Search outside databases for aliases for YME1L1 genePrevious GC identifers: GC10M027134 GC10M027549 GC10M027403
Summaries for YME1L1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for YME1L1 : The protein encoded by this gene is the human ortholog of yeast mitochondrial AAA metalloprotease,Yme1p. It is localized in the mitochondria and can functionally complement a yme1 disruptant yeaststrain. It is proposed that this gene plays a role in mitochondrial protein metabolism and couldbe involved in mitochondrial pathologies. Two transcript variants encoding different isoforms havebeen found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: YMEL1_HUMAN, Q96TA2 Function : Putative ATP-dependent protease which plays a role in mitochondrial protein metabolism
Gene Wiki entry for YME1L1
Genomic Location for YME1L1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the YME1L1 gene Entrez Gene cytogenetic band: 10p14 Ensembl cytogenetic band: 10p12.1 HGNC cytogenetic band: 10p14 YME1L1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10M027439:
(about GC identifiers )
Start:
27,439,389 bp from pter
End:
27,483,327 bp from pter
Size:
43,939 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000010.9 NT_008705.15 Proteins for YME1L1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: YMEL1_HUMAN, Q96TA2 (See
protein sequence )Recommended Name: ATP-dependent metalloprotease YME1L1 Size : 773 amino acids; 86455 Da
Cofactor : Binds 1 zinc ion per subunit (Potential)
Subcellular location : Mitochondrion
Secondary accessions : Q9H1Q0 Q9UMR9Alternative splicing : 2 isoforms : Q96TA2-1 Q96TA2-2
REFSEQ proteins (2 alternative transcripts):
NP_055078.1 NP_647473.1 ENSEMBL proteins: ENSP00000365136 ENSP00000365139 ENSP00000379590 ENSP00000318480 ENSP00000365184 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for YME1L1: Assays for YME1L1:
Protein
Domains/ Families for YME1L1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q96TA2 ProtoNet protein and cluster: Q96TA2
2 Blocks protein families : IPB000642 Peptidase M41 IPB003960 AAA-protein subdomain UniProtKB/Swiss-Prot: YMEL1_HUMAN, Q96TA2 Similarity : In the N-terminal section; belongs to the AAA ATPase familySimilarity : In the C-terminal section; belongs to the peptidase M41 family
Gene Function for YME1L1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_014263 Applied Biosystems Silencer ® siRNAs for YME1L1 Sigma-Aldrich siRNA and siRNA Panels for YME1L1 Sigma-Aldrich shRNA for YME1L1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_014263                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_014263                                  untagged cDNA clones in CMV expression vector (see all 6 ): BC019602  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_139312 UniProtKB/Swiss-Prot: YMEL1_HUMAN, Q96TA2 Function : Putative ATP-dependent protease which plays a role in mitochondrial protein metabolismEnzyme Number (IUBMB): EC 3.4.24.-
1 MGI phenotypic allele for Yme1l1 (no phenotypes)5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
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Pathways & Interactions for YME1L1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for YME1L1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for YME1L1 5/18 Interacting proteins for YME1L1 (ENSP00000318480 3 ) via UniProtKB, MINT, and/or STRING (see all 18
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006508 proteolysis
IEA -- GO:0030163 protein catabolic process
IEA --
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Drugs & Compounds for YME1L1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for YME1L1 1 Novoseek chemical compound relationship for YME1L1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
atp
12.78
3
15803409 (2), 15047485 (1)
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Transcripts for YME1L1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_014263 Sigma-Aldrich siRNA and siRNA Panels for YME1L1 Sigma-Aldrich shRNA for YME1L1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_014263 NM_139312
REFSEQ mRNAs for YME1L1 gene (2 alternative transcripts): NM_014263.2 NM_139312.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_014263 NM_139312
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_014263                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_014263                                  untagged cDNA clones in CMV expression vector (see all 6 ): BC019602  
Additional cDNA sequence: AF070656.1 AF151782.1 AJ132637.1 AK001259.1 AK022930.1 AK291292.1 AK297973.1 AK309708.1 AK314372.1 AY358484.1 BC007795.2 BC019602.1 BC023507.2 BC024032.2 CR611030.1
24/26 DOTS entries (see all 26
): DT.75111939 DT.100840954 DT.416839 DT.91929548 DT.100645914 DT.91659769 DT.95160576 DT.95160588 DT.91772964 DT.121215844 DT.99991030 DT.100887776 DT.100887775 DT.121215872 DT.121215807 DT.91772970 DT.100887772 DT.100887774 DT.100887779 DT.121215795 DT.121215832 DT.121215868 DT.121215883 DT.121215899
24/530 AceView cDNA sequences (see all 530
):CB215705 BG686160 BQ437066 BX406565 AW139700 AA513735 AA425600 BM756343 BX509109 BM981137 BX497238 AI739557 T30730 AL701219 AW467583 AL701495 AY358484 BU156440 AI022577 CA306353 CA426140 BX426567 BQ425509 BX425858
highest scoring ESTs for YME1L1 :AJ132637 AA206679 AA227327 AA295536 AA306135 AA343345 AA495909 AA495910 AA495911 AL036570
Unigene Cluster for YME1L1: YME1-like 1 (S. cerevisiae) Hs.499145 [show with all ESTs ] Unigene Representative Sequence: NM_139312 GeneLoc Exon Structure 5 Ensembl transcripts including schematic representations : ENST00000375969
ENST00000375972
ENST00000396296
ENST00000326799
ENST00000376016
Expression for YME1L1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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YME1L1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for YME1L1 1 / 2 / 3
11 probe-sets matching YME1L1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTGTTATAGGSOURCE GeneReport for Unigene cluster: Hs.499145 Expression variation in blood from EXPOLDB for YME1L1
Orthologs for YME1L1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for YME1L1 gene from 5/14 species (see all 14
)
About this table Species with no ortholog for YME1L1 ENSEMBL Gene Tree for YME1L1 Paralogs for YME1L1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for YME1L1 gene PEX1 2
SNPs/Variants for YME1L1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for YME1L1 (up to first 250kb)
Disorders & Mutations for YME1L1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 607472
Medical News for YME1L1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for YME1L1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/33 PubMed articles for YME1L1 gene (see all 33
): Identification and characterization of YME1L1, a novel paraplegin- related gene. (PubMed id 10843804) 1, 3, 4 Coppola M.... Incerti B. (2000) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054) 3, 4 Deloukas P.... Rogers J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 3, 4 Clark H.F....Gray A. (2003) The human homologue of the yeast mitochondrial AAA metalloprotease Yme1p complements a yeast yme1 disruptant. (PubMed id 10930580) 1, 3 Shah Z.H....Jacobs H.T. (2000) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3 Ota T....Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 3 Strausberg R.L....Marra M.A. (2002) PAMP and PARL, two novel putative metalloproteases interacting with the COOH-terminus of presenilin-1 and -2. (PubMed id 12214059) 3 Pellegrini L.... D'Adamio L. (2001) Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id ) 4 Aoki H.... Hino O. (2000) Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152) 3 Zhang Q.H....Chen Z. (2000)
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Genome Databases showing YME1L1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing YME1L1
(According to HUGE )
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--
Specialized Databases showing YME1L1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for YME1L1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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