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YME1L1 Gene

protein-coding   GIFtS: 54

GC10M027439
YME1-like 1 (S. cerevisiae)
(Previous name: YME1 (S.cerevisiae)-like 1 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EC 3.4.24.- 3
FTSH 2
FTSH1 3
MEG4 2
Meg-4 3
OTTHUMP00000019360 2
OTTHUMP00000019361 2
PAMP 2, 3, 5
YME1L 2, 3, 5
Descriptions
ATP-dependent metalloprotease FtsH1 3
ATP-dependent metalloprotease FtsH1 homolog 2
Presenilin-associated metalloprotease 3
YME1 (S.cerevisiae)-like 1 1
YME1-like 1 2
YME1-like 1 (S. cerevisiae) 2
YME1-like protein 1 3
External Ids
HGNC: 128431
Entrez Gene: 107302
UniProtKB: Q96TA23
Ensembl: ENSG000001367587
Search outside databases for aliases for YME1L1 gene

Previous GC identifers: GC10M027134 GC10M027549 GC10M027403

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for YME1L1:
The protein encoded by this gene is the human ortholog of yeast mitochondrial AAA metalloprotease,
Yme1p. It is localized in the mitochondria and can functionally complement a yme1 disruptant yeast
strain. It is proposed that this gene plays a role in mitochondrial protein metabolism and could
be involved in mitochondrial pathologies. Two transcript variants encoding different isoforms have
been found for this gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: YMEL1_HUMAN, Q96TA2
Function: Putative ATP-dependent protease which plays a role in mitochondrial protein metabolism

Gene Wiki entry for YME1L1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the YME1L1 gene  

Entrez Gene cytogenetic band: 10p14   Ensembl cytogenetic band:  10p12.1   HGNC cytogenetic band: 10p14

YME1L1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M027439:     (about GC identifiers)

Start:
27,439,389 bp from pter
End:
27,483,327 bp from pter
Size:
43,939 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000010.9  NT_008705.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: YMEL1_HUMAN, Q96TA2 (See protein sequence)
Recommended Name: ATP-dependent metalloprotease YME1L1  
Size: 773 amino acids; 86455 Da
Cofactor: Binds 1 zinc ion per subunit (Potential)
Subcellular location: Mitochondrion
Secondary accessions: Q9H1Q0 Q9UMR9
Alternative splicing: 2 isoforms:  Q96TA2-1   Q96TA2-2   

REFSEQ proteins (2 alternative transcripts): 
NP_055078.1  NP_647473.1  


ENSEMBL proteins: 
ENSP00000365136 ENSP00000365139 ENSP00000379590 ENSP00000318480 ENSP00000365184 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (ATP-dependent metalloprotease YME1L1)
Human Recombinant Proteins from Abnova (YME1L1)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005739 mitochondrion IEA--
GO:0016020 membrane IEA--
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Antibodies for YME1L1: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Browse Antibodies at Sigma-Aldrich
Browse R&D Systems for Antibodies
Antibodies from Abcam (ATP-dependent metalloprotease YME1L1), each with their AbpromiseSM
Browse Abnova for Monoclonal and Polyclonal Antibodies
Search Novus for antibodies for YME1L1

Assays for YME1L1: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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5 InterPro domains/families:
 IPR003959 ATPase_AAA_core
 IPR005936 Pept_M41_FtsH
 IPR003960 ATPase_AAA_CS
 IPR000642 Peptidase_M41
 IPR003593 ATPase_AAA+_core


   GeneDecks  YME1L1 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry Q96TA2

ProtoNet protein and cluster: Q96TA2

2 Blocks protein families:
IPB000642 Peptidase M41
IPB003960 AAA-protein subdomain


UniProtKB/Swiss-Prot: YMEL1_HUMAN, Q96TA2
Similarity: In the N-terminal section; belongs to the AAA ATPase family
Similarity: In the C-terminal section; belongs to the peptidase M41 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (YME1L1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (YME1L1)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_014263

              Applied Biosystems Silencer® siRNAs for YME1L1

              Sigma-Aldrich siRNA and siRNA Panels for YME1L1  
                     Sigma-Aldrich shRNA for YME1L1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for YME1L1
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_014263
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_014263
                                 untagged cDNA clones in CMV expression vector (see all 6): BC019602 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_139312

UniProtKB/Swiss-Prot: YMEL1_HUMAN, Q96TA2
Function: Putative ATP-dependent protease which plays a role in mitochondrial protein metabolism
Enzyme Number (IUBMB): EC 3.4.24.- 

1 MGI phenotypic allele for Yme1l1 (no phenotypes)


5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0000166 nucleotide binding IEA--
GO:0004222 metalloendopeptidase activity IEA--
GO:0005524 ATP binding IEA--
GO:0008233 peptidase activity IEA--
GO:0008270 zinc ion binding IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for  YME1L1  (Your Favorite Gene powered by Ingenuity) 
 Lysine Degradation

   GeneDecks  YME1L1 for the pathways selected above  
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 Gene Network CentralTM Interacting Genes and Proteins Network for  YME1L1 


5/18 Interacting proteins for YME1L1 (ENSP000003184803) via UniProtKB, MINT, and/or STRING (see all 18 )
InteractantInteraction Details
GeneCardExternal ID(s)
TLR2ENSP000002600103STRING (score=.962)
TLR4ENSP000003630893STRING (score=.958)
TLR9ENSP000003538743STRING (score=.956)
TLR5ENSP000003558463STRING (score=.933)
TLR10ENSP000003544593STRING (score=.899)
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2 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006508 proteolysis IEA--
GO:0030163 protein catabolic process IEA--
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for YME1L1
1 Novoseek chemical compound relationship for YME1L1 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
atp 12.78 3 15803409 (2), 15047485 (1)
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(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (YME1L1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (YME1L1)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_014263

              Sigma-Aldrich siRNA and siRNA Panels for YME1L1  
                     Sigma-Aldrich shRNA for YME1L1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_014263  NM_139312  

REFSEQ mRNAs for YME1L1 gene (2 alternative transcripts): 

NM_014263.2   NM_139312.1   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_014263  NM_139312  

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_014263
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_014263
                                 untagged cDNA clones in CMV expression vector (see all 6): BC019602 

Additional cDNA sequence: 

AF070656.1 AF151782.1 AJ132637.1 AK001259.1 AK022930.1 AK291292.1 AK297973.1 AK309708.1 
AK314372.1 AY358484.1 BC007795.2 BC019602.1 BC023507.2 BC024032.2 CR611030.1 

24/26 DOTS entries (see all 26 ):

DT.75111939  DT.100840954  DT.416839  DT.91929548  DT.100645914  DT.91659769  DT.95160576  DT.95160588 
DT.91772964  DT.121215844  DT.99991030  DT.100887776  DT.100887775  DT.121215872  DT.121215807  DT.91772970 
DT.100887772  DT.100887774  DT.100887779  DT.121215795  DT.121215832  DT.121215868  DT.121215883  DT.121215899 

24/530 AceView cDNA sequences (see all 530 ):

CB215705 BG686160 BQ437066 BX406565 AW139700 AA513735 AA425600 BM756343 
BX509109 BM981137 BX497238 AI739557 T30730 AL701219 AW467583 AL701495 
AY358484 BU156440 AI022577 CA306353 CA426140 BX426567 BQ425509 BX425858 

highest scoring ESTs for YME1L1:

AJ132637 AA206679 AA227327 AA295536 AA306135 AA343345 AA495909 AA495910 AA495911 AL036570 

Unigene Cluster for YME1L1:

YME1-like 1 (S. cerevisiae)
Hs.499145  [show with all ESTs]
Unigene Representative Sequence: NM_139312


GeneLoc Exon Structure

5 Ensembl transcripts including schematic representations:
ENST00000375969  ENST00000375972  ENST00000396296  ENST00000326799  ENST00000376016  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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YME1L1 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for YME1L1

1 / 2 / 3

11 probe-sets matching YME1L1 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
51843_f_at2, 3 U95-C 1 1.00 1.00 0.98 0.91 AI982808 0.40 1.00 0.76 1

40988_at2, 3 U95-A 1 1.00 1.00 0.92 1.09 AJ132637 1.00 0.90 0.95 1

67175_at2, 3 U95-E 1 0.94 1.00 0.03 0.24 F36583 0.40 1.00 0.76 1

232216_at2, 3 U133-B 1 1.00 1.00 -- -- AA828049 0.40 0.67 0.55 1

201352_at2, 3 U133-A 1 1.00 1.00 -- -- NM_014263 0.60 1.00 0.82 1

201351_s_at2, 3 U133-A 3 1.00 0.83 -- -- AF070656 0.60 0.75 0.68 1

216304_x_at2 U133-A 3 0.73 0.92 -- -- -- -- -- -- --

232216_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

201352_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

201351_s_at2 U133Plus2 3 1.00 0.83 -- -- -- -- -- -- --

216304_x_at2 U133Plus2 3 0.73 0.92 -- -- -- -- -- -- --
GeneDecks  YME1L1 for binary patterns associated with the probe-sets selected above  
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: CTGTTATAGG

SOURCE GeneReport for Unigene cluster: Hs.499145

Expression variation in blood from EXPOLDB for YME1L1

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for YME1L1 gene from 5/14 species (see all 14 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
YME1L11   -- YME1-like 1 (S. cerevisiae) 92.49(n)
95.94(a)
477988  XM_535172.2  XP_535172.2 
chimpanzee
(Pan troglodytes)
YME1L11   -- YME1-like 1 (S. cerevisiae) 99.7(n)
99.74(a)
450366  XM_507710.2  XP_507710.2 
cow
(Bos taurus)
YME1L11   -- YME1-like 1 (S. cerevisiae) 87.66(n)
90.43(a)
505118  XM_581357.3  XP_581357.3 
rat
(Rattus norvegicus)
Yme1l11   -- YME1-like 1 (S. cerevisiae) 89.79(n)
94.41(a)
114217  NM_053682.2  NP_446134.2 
mouse
(Mus musculus)
Yme1l11, 5 25
YME1-like 1 (S. cerevisiae)1, 5 88.48(n)1
94.13(a)1
273771  NM_013771.31  NP_038799.11 
 AF0904305  AI1149455  (see all 18)
About this table        Species with no ortholog for YME1L1

ENSEMBL Gene Tree for YME1L1
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for YME1L1 gene
PEX12  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
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10/331 NCBI SNPs in YME1L1 are shown (see all 331 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 128)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 10 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
--
rs98331,2
A,C,F,H,O27440867(-) GAATAT/CAAGTA 2 -- ut31 ese36Minor allele frequency- C:0.12MN EU EA WA 790
rs74778061,2
A,C,F,H27439123(+) GACTTT/CATCAA 2 -- ng513Minor allele frequency- C:0.49EU EA 298
--
rs37584381,2
C,F,H27440667(+) AAGAGC/TTGTTT 2 -- ut314Minor allele frequency- T:0.09EU EA WA 370
--
rs108291851,2
A,C27439865(+) TGGCTC/TCTGTG 2 -- ut31 ese30--------
rs110155721,2
C,H27477870(+) AGGAAC/TTACAT 2 V/I mis1 ese38Minor allele frequency- T:0.00EU EA WA 838
rs17554031,2
C,H27452502(+) TACGGC/GTGGCT 2 S/T mis1 ese39Minor allele frequency- G:0.17MN EU EA WA 1024
--
rs47492261,2
A,C27440320(+) GACAGC/TGTTTC 2 -- ut31 ese30--------
rs110155431,2
H27448311(+) GCAGCC/GTGGTT 2 Q/H mis14Minor allele frequency- G:0.00EU EA WA 408
rs122188641,2
H27445166(+) AATATG/AGTCGG 2 Y/H mis1 ese34Minor allele frequency- A:0.00EU EA WA 412
rs22746341,2
A,C,F,H,O27474489(+) TTTTAA/GTTCAG 2 L/L syn111Minor allele frequency- G:0.48EA NA EU WA 2302
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HapMap Linkage Disequilibrium images for YME1L1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 607472

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/33 PubMed articles for YME1L1 gene (see all 33 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 10730 HGNC: 12843 AceView: YME1L1 Ensembl:ENSG00000136758 euGenes: HUgn10730
ECgene: YME1L1 H-InvDB: YME1L1
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
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  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for YME1L1:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for YME1L1-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for YME1L1 Browse antibodies at Sigma-Aldrich
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for YME1L1 Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Recombinant Proteins
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 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Search Novus for antibodies for YME1L1

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