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Aliases & Descriptions for YIPF3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| C6orf109 2, 3 | | DKFZp566C243 1, 2 | | FinGER3 1, 2 | | KLIP1 1, 2, 3, 5 | | OTTHUMP00000039825 2 | | dJ337H4.3 1, 2 |
| | | Descriptions |
|---|
| Killer lineage protein 1 2, 3 | | Natural killer cell-specific antigen KLIP1 2, 3 | | YIP1 family member 3 3 | | Yip1 domain family, member 3 2 | | chromosome 6 open reading frame 109 1 |
|
| | Search outside databases for aliases for YIPF3 gene |
Summaries for YIPF3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: YIPF3_HUMAN, Q9GZM5Function: May play a role in hematopoiesisGene Wiki entry for YIPF3 |
Genomic Location for YIPF3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the YIPF3 gene 
Entrez Gene cytogenetic band: 6p21.1 Ensembl cytogenetic band: 6p21.1 HGNC cytogenetic band: 6p21.1YIPF3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M043588:
(about GC identifiers)
Start:
|
43,587,543 bp from pter |
End:
|
43,592,701 bp from pter |
Size:
|
5,159 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007592.14
| Proteins for YIPF3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: YIPF3_HUMAN, Q9GZM5 (See
protein sequence)Recommended Name: Protein YIPF3 Size: 350 amino acids; 38248 Da
Subcellular location: Cell membrane; Multi-pass membrane protein. Cytoplasm. Note=Localization to the cytoplasm or to the cell membrane is developmentally and ontogenetically regulated
Developmental stage: Expressed in fetal liver (at protein level). Expressed in embryonic hematopoiesis sites
Sequence caution: Sequence=CAI42626.1; Type=Erroneous gene model prediction;
Secondary accessions: Q5JTD2 Q6FI85 Q8NI57 Q9NWE3 Q9Y3U9Post-translational modifications:
Not glycosylated1
REFSEQ proteins: NP_056203.2
ENSEMBL proteins: ENSP00000259737 ENSP00000361494 ENSP00000361499
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for YIPF3: Assays for YIPF3: | Protein
Domains/ Families for YIPF3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9GZM5
ProtoNet protein and cluster: Q9GZM5 UniProtKB/Swiss-Prot: YIPF3_HUMAN, Q9GZM5Similarity: Belongs to the YIP1 family | Gene Function for YIPF3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015388
Applied Biosystems Silencer® siRNAs for YIPF3
Sigma-Aldrich siRNA for YIPF3  Sigma-Aldrich shRNA for YIPF3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_015388                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_015388                                  untagged cDNA clone in CMV expression vector: NM_015388 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_015388
UniProtKB/Swiss-Prot: YIPF3_HUMAN, Q9GZM5Function: May play a role in hematopoiesis | Pathways & Interactions for YIPF3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Interacting proteins for YIPF3 (ENSP000002597373) via UniProtKB, MINT, and/or STRINGAbout this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0030154 | cell differentiation |
IEA | -- | About this table
|
Drugs & Compounds for YIPF3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for YIPF3
|
Transcripts for YIPF3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015388
Sigma-Aldrich siRNA for YIPF3  Sigma-Aldrich shRNA for YIPF3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_015388 REFSEQ mRNAs for YIPF3 gene: NM_015388.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_015388               OriGene GFP tagged cDNA clone in CMV expression vector: NM_015388                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_015388                                  untagged cDNA clone in CMV expression vector: NM_015388  Additional cDNA sequence: AF162672.1 AK000946.1 AK021433.1 AK021655.1 AK022757.1 AK298150.1 AK308961.1 AL050274.1 BC019297.1 CR533541.1 CR590349.1 CR590752.1 CR592266.1 CR595236.1 CR596249.1 CR596581.1 CR597677.1 CR598162.1 CR599615.1 CR601987.1 CR602267.1 CR603202.1 CR603408.1 CR606024.1 CR607768.1 CR610470.1 CR610983.1 CR611260.1 CR611748.1 CR612415.1 CR615118.1 CR615153.1 CR615623.1 CR616384.1 CR616987.1 CR618212.1 CR619054.1 CR619437.1 CR619816.1 CR621993.1 CR622532.1 CR622890.1 CR623137.1 24/28 DOTS entries (see all 28
): DT.75111219 DT.100757794 DT.100883220 DT.121405535 DT.99995562 DT.121405526 DT.97768547 DT.97860216 DT.100883226 DT.121405802 DT.121405815 DT.100883230 DT.121405362 DT.121405354 DT.100031673 DT.95134767 DT.100883241 DT.100883243 DT.121405547 DT.121405548 DT.86846320 DT.87016652 DT.95134790 DT.95134846 24/560 AceView cDNA sequences (see all 560
):BI766072 CR601987 BQ937554 BU556848 AU126250 BM008902 BU957642 BM836904 CR596581 CB119124 CR590752 BI915653 CA308984 BI756054 CR622532 BI829576 CR598162 CB117693 BM698074 CD368003 BE276188 BX334763 BG819128 BG742051
highest scoring ESTs for YIPF3:AL050274 AA599418 AF162672 AI816224 AK000946 AK021655 AK022757 AL521342 AL559468 AU116955 Unigene Cluster for YIPF3: Yip1 domain family, member 3 Hs.440950 [show with all ESTs]Unigene Representative Sequence: AK021433
GeneLoc Exon Structure
5/15 Alternative Splicing Database (ASD) splice patterns (SP) for YIPF3 (see all 15
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | · | 1f | · | 1g | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | · | 5d | ^ | 6a | · | 6b | · | 6c | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 11a | · | 11b | ^ | 12 | |
| SP1: | |   | |   | |   | |
| SP2: | |   | |   | |   | |
| SP3: | |   | |   | |   | |
| SP4: | |   | |   | |   | |
| SP5: | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for YIPF3
3 Ensembl transcripts including schematic representations: ENST00000259737
ENST00000372417
ENST00000372422
|
Expression for YIPF3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| YIPF3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for YIPF3
1 / 2 / 3 3 probe-sets matching YIPF3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTTCGTAGAT
SOURCE GeneReport for Unigene cluster: Hs.440950
Expression variation in blood from EXPOLDB for YIPF3 UniProtKB/Swiss-Prot: YIPF3_HUMAN, Q9GZM5Tissue specificity: Expressed by nucleated hematopoietic cells (at protein level) |
Orthologs for YIPF3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for YIPF3 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for YIPF3
ENSEMBL Gene Tree for YIPF3 | Paralogs for YIPF3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for YIPF3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
The following additional 37 SNP(s) have been
found in Applied Biosystems data source: (Click
for
Applied Biosystems TaqMan ® Genotyping Assay)
HapMap Linkage Disequilibrium images for YIPF3 (up to first 250kb)
|
Disorders & Mutations for YIPF3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 609775
|
Medical News for YIPF3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for YIPF3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/11 PubMed articles for YIPF3 gene (see all 11
): |
Search for YIPF3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing YIPF3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing YIPF3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing YIPF3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for YIPF3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for YIPF3:

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Incremental update: 13 Oct 2009
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