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Aliases & Descriptions for YIF1B
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FLJ23477 2 FLJ50074 2 FinGER8 1 , 2 MGC39135 2
Descriptions YIP1-interacting factor homolog B 3 Yip1 interacting factor homolog B 2 Yip1 interacting factor homolog B (S. cerevisiae) 2
Search outside databases for aliases for YIF1B gene
Summaries for YIF1B (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Genomic Location for YIF1B
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the YIF1B gene Entrez Gene cytogenetic band: 19q13.2 Ensembl cytogenetic band: 19q13.2 HGNC cytogenetic band: 19q13.2 YIF1B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19M043488:
(about GC identifiers )
Start:
43,487,584 bp from pter
End:
43,498,446 bp from pter
Size:
10,863 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000019.8 NT_011109.15 Proteins for YIF1B
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: YIF1B_HUMAN, Q5BJH7 (See
protein sequence )Recommended Name: Protein YIF1B Size : 314 amino acids; 34435 Da
Subcellular location : Membrane; Multi-pass membrane protein (Potential)
Secondary accessions : Q5JPC2 Q8WY70 Q96C02 Q96IC4Alternative splicing : 5 isoforms : Q5BJH7-1 Q5BJH7-2 Q5BJH7-3 Q5BJH7-4 Q5BJH7-5
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (7 alternative transcripts):
NP_001034760.1 NP_001034761.1 NP_001034762.1 NP_001138933.1 NP_001138934.1 NP_001138935.1 NP_291035.1 ENSEMBL proteins: ENSP00000337411 ENSP00000375971 ENSP00000384808 ENSP00000329559 ENSP00000343435 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0016020 membrane
IEA -- GO:0016021 integral to membrane
IEA --
About this table Antibodies for YIF1B: Assays for YIF1B:
Protein
Domains/ Families for YIF1B(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q5BJH7 ProtoNet protein and cluster: Q5BJH7
UniProtKB/Swiss-Prot: YIF1B_HUMAN, Q5BJH7 Similarity : Belongs to the YIF1 family
Gene Function for YIF1B
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 9 ): NM_001039671 Applied Biosystems Silencer ® siRNAs for YIF1B Sigma-Aldrich siRNA for YIF1B Browse shRNA at Sigma-Aldrich Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 7 ): NM_001039671                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 7 ): NM_001039671                                  untagged cDNA clones in CMV expression vector (see all 9 ): BC014974  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001039672 Pathways & Interactions for YIF1B
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Drugs & Compounds for YIF1B (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for YIF1B
Transcripts for YIF1B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 9 ): NM_001039671 Sigma-Aldrich siRNA for YIF1B Browse shRNA at Sigma-Aldrich Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001039671 NM_001039672 NM_001039673 NM_033557
REFSEQ mRNAs for YIF1B gene (7 alternative transcripts): NM_001039671.2 NM_001039672.2 NM_001039673.2 NM_001145461.1 NM_001145462.1 NM_001145463.1 NM_033557.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001039671 NM_001039672 NM_001039673 NM_033557
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 7 ): NM_001039671                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 7 ): NM_001039671                                  untagged cDNA clones in CMV expression vector (see all 9 ): BC014974  
Additional cDNA sequence: AK027130.1 AL833382.1 AY358965.1 BC007644.1 BC014974.1 BC025257.1 BC091477.1 CR594602.1 CR597352.1 CR597805.1 CR598537.1 CR601973.1 CR616030.1
24 DOTS entries : DT.310298 DT.100762081 DT.121483044 DT.100755106 DT.97846838 DT.100755105 DT.100755104 DT.100772849 DT.121483028 DT.92431507 DT.121482967 DT.92431508 DT.92424415 DT.100692309 DT.100713714 DT.102831790 DT.40284236 DT.86854239 DT.92431504 DT.95190672 DT.121482970 DT.75118830 DT.95153722 DT.99937702
24/218 AceView cDNA sequences (see all 218
):BM717386 CR616030 BF339777 AW002546 BM923272 BU615679 BM703847 BI963081 CR597805 NM_033557 AI538475 BQ680270 AI380916 AL833382 BX354499 AI085552 AF258578 BM708247 BM665108 BU620538 CB961267 AW271667 C02248 BG116654
highest scoring ESTs for YIF1B :AI074877 AI079540 AJ705254 AL833382 BC007644 BC014974 BE745405 BE746235 BE780379 BE782991
Unigene Cluster for YIF1B: Yip1 interacting factor homolog B (S. cerevisiae) Hs.280741 [show with all ESTs ] Unigene Representative Sequence: NM_033557 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for YIF1B (see all 12
) ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b SP1 :     -   -   -   -   -   -   -       -                 -       SP2 :       -   -   -   -   -   -       -                 -       SP3 :     -   -   -   -   -   -   -       -                       SP4 :             -   -   -       -                       SP5 :               -   -       -                      
About this scheme ECgene alternative splicing isoforms for YIF1B 5 Ensembl transcripts including schematic representations : ENST00000337679
ENST00000392124
ENST00000404021
ENST00000329420
ENST00000339413
Expression for YIF1B
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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YIF1B expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for YIF1B 1 / 2 / 3
11 probe-sets matching YIF1B gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.280741
Orthologs for YIF1B
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for YIF1B gene from 5/14 species (see all 14
)
About this table Species with no ortholog for YIF1B ENSEMBL Gene Tree for YIF1B Paralogs for YIF1B (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for YIF1B gene YIF1A 2
SNPs/Variants for YIF1B (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for YIF1B (up to first 250kb)
Disorders & Mutations for YIF1B
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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Medical News for YIF1B (Possibly Related Articles in
Doctor's Guide )
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Publications for YIF1B (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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8 PubMed articles for YIF1B gene :
Search for YIF1B
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing YIF1B
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing YIF1B
(According to HUGE )
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Specialized Databases showing YIF1B (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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