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Aliases for YBX3P1 Gene

Aliases for YBX3P1 Gene

  • Y-Box Binding Protein 3 Pseudogene 1 2 3
  • Cold Shock Domain Protein A Pseudogene 1 2 3
  • CSDAP1 3

External Ids for YBX3P1 Gene

Previous HGNC Symbols for YBX3P1 Gene

  • CSDAP1

Summaries for YBX3P1 Gene

GeneCards Summary for YBX3P1 Gene

YBX3P1 (Y-Box Binding Protein 3 Pseudogene 1) is a Pseudogene.

Additional gene information for YBX3P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for YBX3P1 Gene

Genomics for YBX3P1 Gene

Regulatory Elements for YBX3P1 Gene


Promoters for YBX3P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085361 123 399 REST EZH2

Genomic Location for YBX3P1 Gene

Chromosome:
16
Start:
31,567,767 bp from pter
End:
31,569,524 bp from pter
Size:
1,758 bases
Orientation:
Minus strand

Genomic View for YBX3P1 Gene

Genes around YBX3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
YBX3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for YBX3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for YBX3P1 Gene

Proteins for YBX3P1 Gene

Post-translational modifications for YBX3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for YBX3P1 Gene

Domains & Families for YBX3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for YBX3P1 Gene

Function for YBX3P1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for YBX3P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for YBX3P1 Gene

Localization for YBX3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for YBX3P1 Gene

Pathways & Interactions for YBX3P1 Gene

SuperPathways for YBX3P1 Gene

No Data Available

Interacting Proteins for YBX3P1 Gene

Gene Ontology (GO) - Biological Process for YBX3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for YBX3P1 Gene

Drugs & Compounds for YBX3P1 Gene

No Compound Related Data Available

Transcripts for YBX3P1 Gene

mRNA/cDNA for YBX3P1 Gene

(1) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:

Unigene Clusters for YBX3P1 Gene

Y box binding protein 3 pseudogene 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for YBX3P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for YBX3P1 Gene

No ASD Table

Relevant External Links for YBX3P1 Gene

GeneLoc Exon Structure for
YBX3P1
ECgene alternative splicing isoforms for
YBX3P1

Expression for YBX3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for YBX3P1 Gene

mRNA differential expression in normal tissues according to GTEx for YBX3P1 Gene

This gene is overexpressed in Muscle - Skeletal (x17.0) and Testis (x16.3).

NURSA nuclear receptor signaling pathways regulating expression of YBX3P1 Gene:

YBX3P1

SOURCE GeneReport for Unigene cluster for YBX3P1 Gene:

Hs.650902
genes like me logo Genes that share expression patterns with YBX3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for YBX3P1 Gene

Orthologs for YBX3P1 Gene

No data available for Orthologs and Evolution for YBX3P1 Gene

Paralogs for YBX3P1 Gene

No data available for Paralogs for YBX3P1 Gene

Variants for YBX3P1 Gene

Sequence variations from dbSNP and Humsavar for YBX3P1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000978677 -- 31,568,373(+) CCTGG(G/T)GAGCC nc-transcript-variant, upstream-variant-2KB
rs1001641826 -- 31,567,501(+) GCAAA(G/T)GTTCC nc-transcript-variant, downstream-variant-500B
rs1001880738 -- 31,568,136(+) CTTGT(A/C)TTCTG nc-transcript-variant, upstream-variant-2KB
rs1001980392 -- 31,568,782(+) CACGT(A/G)GTAAG nc-transcript-variant, upstream-variant-2KB
rs1002080407 -- 31,567,830(+) AGGAA(C/T)TTCTT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for YBX3P1 Gene

Variant ID Type Subtype PubMed ID
esv2658959 CNV deletion 23128226
esv2714195 CNV deletion 23290073
esv3570465 CNV gain 25503493
esv3638402 CNV gain 21293372
esv3638403 CNV gain 21293372
esv3892828 CNV gain 25118596
nsv1060240 CNV gain 25217958
nsv833195 CNV loss 17160897

Relevant External Links for YBX3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
YBX3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for YBX3P1 Gene

Disorders for YBX3P1 Gene

Relevant External Links for YBX3P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
YBX3P1

No disorders were found for YBX3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for YBX3P1 Gene

Publications for YBX3P1 Gene

  1. Assignment of a human cold shock domain protein A intronless pseudogene (CSDAP1) to human chromosome 16 band p11.2 by in situ hybridization. (PMID: 10343102) Argyrokastritis A … Moschonas NK (Cytogenetics and cell genetics 1999) 2 3 60

Products for YBX3P1 Gene

Sources for YBX3P1 Gene

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