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Aliases for YARS2 Gene

Aliases for YARS2 Gene

  • Tyrosyl-TRNA Synthetase 2 2 3 5
  • Tyrosyl-TRNA Synthetase 2, Mitochondrial 2 3
  • Tyrosine TRNA Ligase 2, Mitochondrial 2 3
  • EC 6.1.1.1 4 58
  • TYRRS 3 4
  • Tyrosine--TRNA Ligase, Mitochondrial 3
  • Tyrosyl-TRNA Synthetase 4
  • MT-TYRRS 3
  • CGI-04 3
  • MLASA2 3

External Ids for YARS2 Gene

Previous GeneCards Identifiers for YARS2 Gene

  • GC12M032789
  • GC12M032899
  • GC12M032651
  • GC12M032880

Summaries for YARS2 Gene

Entrez Gene Summary for YARS2 Gene

  • This gene encodes a mitochondrial protein that catalyzes the attachment of tyrosine to tRNA(Tyr). Mutations in this gene are associated with myopathy with lactic acidosis and sideroblastic anemia type 2 (MLASA2). [provided by RefSeq, Jan 2011]

GeneCards Summary for YARS2 Gene

YARS2 (Tyrosyl-TRNA Synthetase 2) is a Protein Coding gene. Diseases associated with YARS2 include Myopathy, Lactic Acidosis, And Sideroblastic Anemia 2 and Myopathy, Lactic Acidosis, And Sideroblastic Anemia 1. Among its related pathways are tRNA Aminoacylation and Gene Expression. GO annotations related to this gene include poly(A) RNA binding and nucleotide binding.

UniProtKB/Swiss-Prot for YARS2 Gene

  • Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Additional gene information for YARS2 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for YARS2 Gene

Genomics for YARS2 Gene

Regulatory Elements for YARS2 Gene

Enhancers for YARS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H032016 0.9 ENCODE 20.7 +738.8 738758 2 ZFP64 ZEB1 ZNF138 ZNF366 ZNF202 ZNF654 SP3 ZNF680 ZC3H11A REST DDX11 LOC100420981 DDX11-AS1 SINHCAF DNM1L YARS2 BICD1 FLJ13224 KIAA1551 AMN1
GH12H032677 1.4 Ensembl ENCODE 11.4 +76.3 76326 3 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 BICD1 LOC100420981 YARS2 H3F3C DNM1L ENSG00000257643
GH12H032753 1.1 ENCODE 14.1 +0.4 424 3 PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 YARS2 H3F3C KIAA1551 DNM1L PIR46706 GC12M032745
GH12H031889 1.2 Ensembl ENCODE dbSUPER 11.6 +865.1 865069 1 ZNF202 PKNOX1 HLF ZFP64 ZNF140 ELF1 ZBTB8A ZNF781 ZNF518A ZNF697 DDX11-AS1 DDX11 LOC100420981 BICD1 DNM1L YARS2 KIAA1551 SINHCAF LINC02422 ENSG00000256465
GH12H032020 1 ENCODE 13.4 +734.9 734889 0 PKNOX1 ATF1 ARNT TCF12 GTF3C2 ZNF766 GATA2 ELK1 ATF7 CAVIN1 DDX11 LOC100420981 SINHCAF YARS2 FLJ13224 DDX11-AS1 ENSG00000257094 ENSG00000257852
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around YARS2 on UCSC Golden Path with GeneCards custom track

Promoters for YARS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000050735 461 2201 PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for YARS2 Gene

Chromosome:
12
Start:
32,725,091 bp from pter
End:
32,755,961 bp from pter
Size:
30,871 bases
Orientation:
Minus strand

Genomic View for YARS2 Gene

Genes around YARS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
YARS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for YARS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for YARS2 Gene

Proteins for YARS2 Gene

  • Protein details for YARS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2Z4-SYYM_HUMAN
    Recommended name:
    Tyrosine--tRNA ligase, mitochondrial
    Protein Accession:
    Q9Y2Z4
    Secondary Accessions:
    • D3DUW8
    • Q9H817

    Protein attributes for YARS2 Gene

    Size:
    477 amino acids
    Molecular mass:
    53199 Da
    Quaternary structure:
    • Homodimer.

    Three dimensional structures from OCA and Proteopedia for YARS2 Gene

neXtProt entry for YARS2 Gene

Selected DME Specific Peptides for YARS2 Gene

Q9Y2Z4:
  • ALVGGAT
  • GFDPTADSLH
  • DSLHVGH
  • GKSAGNA
  • QAYDFYYL
  • GKRNFYI
  • TSPFELYQ
  • YCGFDPT
  • SLHVGHL

Post-translational modifications for YARS2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for YARS2 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for YARS2 Gene

Gene Families for YARS2 Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Enzymes
  • Plasma proteins
  • Potential drug targets
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for YARS2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y2Z4

UniProtKB/Swiss-Prot:

SYYM_HUMAN :
  • Belongs to the class-I aminoacyl-tRNA synthetase family.
Family:
  • Belongs to the class-I aminoacyl-tRNA synthetase family.
genes like me logo Genes that share domains with YARS2: view

Function for YARS2 Gene

Molecular function for YARS2 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + L-tyrosine + tRNA(Tyr) = AMP + diphosphate + L-tyrosyl-tRNA(Tyr).
UniProtKB/Swiss-Prot Function:
Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Enzyme Numbers (IUBMB) for YARS2 Gene

Phenotypes From GWAS Catalog for YARS2 Gene

Gene Ontology (GO) - Molecular Function for YARS2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000049 tRNA binding TAS 15779907
GO:0000166 nucleotide binding IEA --
GO:0003723 RNA binding IDA 22681889
GO:0004812 aminoacyl-tRNA ligase activity IEA --
GO:0004831 tyrosine-tRNA ligase activity TAS,IEA --
genes like me logo Genes that share ontologies with YARS2: view
genes like me logo Genes that share phenotypes with YARS2: view

Human Phenotype Ontology for YARS2 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

  • Taconic Biosciences Mouse Models for YARS2

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for YARS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Animal Models , Transcription Factor Targets and HOMER Transcription for YARS2 Gene

Localization for YARS2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for YARS2 Gene

Mitochondrion matrix.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for YARS2 gene
Compartment Confidence
mitochondrion 5
nucleus 5
cytosol 3

Subcellular locations from the

Human Protein Atlas (HPA)
  • Mitochondria (3)
  • Nuclear bodies (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for YARS2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005739 mitochondrion TAS 15779907
GO:0005759 mitochondrial matrix TAS --
GO:0005829 cytosol IBA --
GO:0016604 nuclear body IDA --
genes like me logo Genes that share ontologies with YARS2: view

Pathways & Interactions for YARS2 Gene

genes like me logo Genes that share pathways with YARS2: view

Pathways by source for YARS2 Gene

1 KEGG pathway for YARS2 Gene

Gene Ontology (GO) - Biological Process for YARS2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation NAS,IEA 10810093
GO:0006418 tRNA aminoacylation for protein translation IEA,TAS --
GO:0006437 tyrosyl-tRNA aminoacylation IEA --
GO:0043039 tRNA aminoacylation IDA 15779907
GO:0070184 mitochondrial tyrosyl-tRNA aminoacylation IMP 20598274
genes like me logo Genes that share ontologies with YARS2: view

No data available for SIGNOR curated interactions for YARS2 Gene

Drugs & Compounds for YARS2 Gene

(5) Drugs for YARS2 Gene - From: DrugBank, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
L-Tyrosine Approved Nutra Target 0
Phosphoric acid Approved Pharma 0
Adenosine monophosphate Approved Nutra 0
ATP Nutra Agonist 0

(1) Additional Compounds for YARS2 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
pyrophosphate
  • (4-)Diphosphoric acid ion
  • (P2O74-)Diphosphate
  • Diphosphate
  • Diphosphoric acid
  • PPi
14000-31-8
genes like me logo Genes that share compounds with YARS2: view

Transcripts for YARS2 Gene

mRNA/cDNA for YARS2 Gene

Unigene Clusters for YARS2 Gene

Tyrosyl-tRNA synthetase 2, mitochondrial:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for YARS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for YARS2 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5
SP1:
SP2: -

Relevant External Links for YARS2 Gene

GeneLoc Exon Structure for
YARS2
ECgene alternative splicing isoforms for
YARS2

Expression for YARS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for YARS2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for YARS2 Gene

This gene is overexpressed in Salivary gland (9.9) and Peripheral blood mononuclear cells (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for YARS2 Gene



Protein tissue co-expression partners for YARS2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of YARS2 Gene:

YARS2

SOURCE GeneReport for Unigene cluster for YARS2 Gene:

Hs.505231

Evidence on tissue expression from TISSUES for YARS2 Gene

  • Eye(4.2)

Phenotype-based relationships between genes and organs from Gene ORGANizer for YARS2 Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • digestive
  • endocrine
  • immune
  • integumentary
  • nervous
  • reproductive
  • respiratory
  • skeletal muscle
  • skeleton
Organs:
Head and neck:
  • brain
  • chin
  • cranial nerve
  • eye
  • eyelid
  • face
  • head
  • jaw
  • lip
  • mandible
  • maxilla
  • mouth
  • nose
  • pharynx
  • skull
Thorax:
  • esophagus
  • lung
  • rib
  • rib cage
Abdomen:
  • liver
  • stomach
Pelvis:
  • fallopian tube
  • ovary
  • pelvis
  • penis
  • prostate
  • testicle
  • uterus
  • vagina
  • vas deferens
  • vulva
Limb:
  • lower limb
  • upper limb
General:
  • blood
  • blood vessel
  • bone marrow
  • hair
  • peripheral nervous system
  • red blood cell
  • skin
  • spinal column
  • vertebrae
  • white blood cell
genes like me logo Genes that share expression patterns with YARS2: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for YARS2 Gene

Orthologs for YARS2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for YARS2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia YARS2 33 34
  • 99.72 (n)
cow
(Bos Taurus)
Mammalia YARS2 33 34
  • 88.33 (n)
dog
(Canis familiaris)
Mammalia YARS2 33 34
  • 86.09 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 86 (a)
OneToMany
-- 34
  • 76 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Yars2 33 16 34
  • 83.86 (n)
rat
(Rattus norvegicus)
Mammalia Yars2 33
  • 83.23 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia YARS2 34
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves YARS2 33 34
  • 70.62 (n)
lizard
(Anolis carolinensis)
Reptilia YARS2 34
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia yars2 33
  • 64.8 (n)
Str.8179 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.14420 33
zebrafish
(Danio rerio)
Actinopterygii yars2 33 34 34
  • 61.38 (n)
wufi41d10 33
African malaria mosquito
(Anopheles gambiae)
Insecta TTRNA1 33
  • 53.8 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG16912 33 34
  • 53.54 (n)
worm
(Caenorhabditis elegans)
Secernentea yars-1 33 34
  • 47.26 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E24267g 33
  • 48.86 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ABR192W 33
  • 47.68 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MSY1 33 34 36
  • 46.36 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons emb2768 33
  • 48.88 (n)
rice
(Oryza sativa)
Liliopsida Os01g0500900 33
  • 49.87 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU03030 33
  • 51.39 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPCC576.06c 33
  • 46.05 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 42 (a)
OneToOne
Species where no ortholog for YARS2 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for YARS2 Gene

ENSEMBL:
Gene Tree for YARS2 (if available)
TreeFam:
Gene Tree for YARS2 (if available)

Paralogs for YARS2 Gene

No data available for Paralogs for YARS2 Gene

Variants for YARS2 Gene

Sequence variations from dbSNP and Humsavar for YARS2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs267607180 Pathogenic, Myopathy with lactic acidosis and sideroblastic anemia 2 (MLASA2) [MIM:613561] 32,755,719(-) TTCTT(C/G/T)CCGGA nc-transcript-variant, reference, synonymous-codon, missense
rs587777213 Pathogenic, Myopathy with lactic acidosis and sideroblastic anemia 2 (MLASA2) [MIM:613561] 32,755,738(+) ACAGA(C/T)CTCGA nc-transcript-variant, reference, missense
rs11539445 Pathogenic 32,755,303(-) GGGGG(A/G/T)TCACT nc-transcript-variant, reference, missense
rs121908531 Pathogenic 32,731,118(+) GACTG(A/C/G)CATTA intron-variant, reference, missense
rs587777214 Pathogenic 32,750,744(+) TTCTC(A/G)TCCAT nc-transcript-variant, reference, stop-gained

Structural Variations from Database of Genomic Variants (DGV) for YARS2 Gene

Variant ID Type Subtype PubMed ID
dgv1429n100 CNV gain 25217958

Variation tolerance for YARS2 Gene

Residual Variation Intolerance Score: 18.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.72; 78.73% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for YARS2 Gene

Human Gene Mutation Database (HGMD)
YARS2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
YARS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for YARS2 Gene

Disorders for YARS2 Gene

MalaCards: The human disease database

(9) MalaCards diseases for YARS2 Gene - From: HGMD, OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search YARS2 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

SYYM_HUMAN
  • Myopathy with lactic acidosis and sideroblastic anemia 2 (MLASA2) [MIM:613561]: A rare oxidative phosphorylation disorder specific to skeletal muscle and bone marrow. Affected individuals manifest sideroblastic anemia, progressive lethargy, muscle weakness, and exercise intolerance associated with persistent lactic acidemia. {ECO:0000269 PubMed:20598274, ECO:0000269 PubMed:22504945}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for YARS2

Genetic Association Database (GAD)
YARS2
Human Genome Epidemiology (HuGE) Navigator
YARS2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
YARS2
genes like me logo Genes that share disorders with YARS2: view

No data available for Genatlas for YARS2 Gene

Publications for YARS2 Gene

  1. Crystal structure of human mitochondrial tyrosyl-tRNA synthetase reveals common and idiosyncratic features. (PMID: 17997975) Bonnefond L … Rudinger-Thirion J (Structure (London, England : 1993) 2007) 3 4 22 60
  2. Toward the full set of human mitochondrial aminoacyl-tRNA synthetases: characterization of AspRS and TyrRS. (PMID: 15779907) Bonnefond L … Sissler M (Biochemistry 2005) 2 3 4 60
  3. A novel mutation in YARS2 causes myopathy with lactic acidosis and sideroblastic anemia. (PMID: 22504945) Sasarman F … Shoubridge EA (Human mutation 2012) 3 4 60
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson SL … O'Brien SJ (PloS one 2010) 3 45 60
  5. Mutation of the mitochondrial tyrosyl-tRNA synthetase gene, YARS2, causes myopathy, lactic acidosis, and sideroblastic anemia--MLASA syndrome. (PMID: 20598274) Riley LG … Christodoulou J (American journal of human genetics 2010) 3 4 60

Products for YARS2 Gene

Sources for YARS2 Gene

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