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Aliases & Descriptions for YARS
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CMTDIC 2, 5 | | EC 6.1.1.1 3 | | OTTHUMP00000004027 2 | | TYRRS 2, 5 | | TyrRS 3 | | YRS 1, 2, 5 | | YTS 1, 2, 5 | | tyrRS 1 |
| | | Descriptions |
|---|
| Tyrosyl--tRNA ligase 3 | | tyrosine tRNA ligase 1, cytoplasmic 2 | | tyrosyl-tRNA synthetase 2 |
|
| | Search outside databases for aliases for YARS genePrevious GC identifers: GC01M033060 GC01M032195 GC01M032667 GC01M032743 GC01M032909 |
Summaries for YARS(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for YARS: Aminoacyl-tRNA synthetases catalyze the aminoacylation of tRNA by their cognate amino acid. Because of their central role in linking amino acids with nucleotide triplets contained in tRNAs, aminoacyl-tRNA synthetases are thought to be among the first proteins that appeared in evolution. Tyrosyl-tRNA synthetase belongs to the class I tRNA synthetase family. Cytokine activities have also been observed for the human tyrosyl-tRNA synthetase, after it is split into two parts, an N-terminal fragment that harbors the catalytic site and a C-terminal fragment found only in the mammalian enzyme. The N-terminal fragment is an interleukin-8-like cytokine, whereas the released C-terminal fragment is an EMAP II-like cytokine. [provided by RefSeq] UniProtKB/Swiss-Prot: SYYC_HUMAN, P54577Function: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr) (By similarity)Gene Wiki entry for YARS |
Genomic Location for YARS
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the YARS gene 
Entrez Gene cytogenetic band: 1p35.1 Ensembl cytogenetic band: 1p35.1 HGNC cytogenetic band: 1p35.1YARS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M033013:
(about GC identifiers)
Start:
|
33,013,427 bp from pter |
End:
|
33,056,220 bp from pter |
Size:
|
42,794 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000001.9 NT_032977.8
| Proteins for YARS
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SYYC_HUMAN, P54577 (See
protein sequence)Recommended Name: Tyrosyl-tRNA synthetase, cytoplasmic Size: 528 amino acids; 59143 Da
Subunit: Homodimer
Subcellular location: Cytoplasm
Sequence caution: Sequence=AAB39406.1; Type=Frameshift; Positions=354;
PDB structures from and Proteopedia :1N3L (3D)
 1NTG (3D)
 1Q11 (3D)
 
Secondary accessions: O43276 Q53EN1Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003671.1
ENSEMBL proteins: ENSP00000362576
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for YARS: Assays for YARS: | Protein
Domains/ Families for YARS(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P54577
ProtoNet protein and cluster: P54577 3 Blocks protein families: IPB002305 Aminoacyl-tRNA synthetase IPB002307 Tyrosyl-tRNA synthetase signature IPB002547 t-RNA-binding region
UniProtKB/Swiss-Prot: SYYC_HUMAN, P54577Similarity: Belongs to the class-I aminoacyl-tRNA synthetase familySimilarity: Contains 1 tRNA-binding domain | Gene Function for YARS
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003680
Applied Biosystems Silencer® siRNAs for YARS
Sigma-Aldrich siRNA for YARS  Sigma-Aldrich shRNA for YARS  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003680                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003680                                  untagged cDNA clones in CMV expression vector (see all 2): NM_003680 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003680
UniProtKB/Swiss-Prot: SYYC_HUMAN, P54577Function: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr) (By similarity)Catalytic activity: ATP + L-tyrosine + tRNA(Tyr) = AMP + diphosphate + L-tyrosyl-tRNA(Tyr)Enzyme Number (IUBMB): EC 6.1.1.1 5/8 Gene Ontology (GO) molecular function terms (links to tree view) (see all 8
): About this table | Pathways & Interactions for YARS
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for YARS (Your Favorite Gene powered by Ingenuity) 
5/25 Interacting proteins for YARS (P545771 ENSP000003625763) via UniProtKB, MINT, and/or STRING (see all 25
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for YARS(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for YARS 10 Novoseek chemical compound relationships for YARS gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| aminoacyl-trna |
87.18 |
3 |
7743129 (1), 15779907 (1), 17401211 (1) |
| trna(tyr) |
84.91 |
4 |
10630994 (4) |
| trna |
74.67 |
45 |
9162081 (7), 7743129 (2), 18560823 (2), 12450387 (2) (see all 11) |
| anticodon |
53.41 |
3 |
15130561 (1), 12427973 (1) |
| tyrosine |
49.18 |
10 |
11856731 (4), 12016229 (2), 9057892 (1), 10630994 (1) (see all 6) |
| hydrogen |
22.38 |
1 |
18560823 (1) |
| atp |
18.39 |
7 |
12016229 (2), 18560823 (2), 7711024 (1), 12473451 (1) |
| gtp |
10.82 |
1 |
7530051 (1) |
| lysine |
5.02 |
1 |
12016229 (1) |
| potassium |
0.00 |
3 |
11856731 (2), 12016229 (1) |
About this table
|
Transcripts for YARS(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003680
Sigma-Aldrich siRNA for YARS  Sigma-Aldrich shRNA for YARS  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003680 REFSEQ mRNAs for YARS gene: NM_003680.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003680               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003680                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003680                                  untagged cDNA clones in CMV expression vector (see all 2): NM_003680  Additional cDNA sequence: AK026535.1 AK125213.1 AK223608.1 BC001933.1 BC004151.2 BC016689.1 CR622576.1 CR626320.1 U40714.1 U89436.1 24/42 DOTS entries (see all 42
): DT.40291549 DT.100877451 DT.95168272 DT.100877446 DT.95168270 DT.318916 DT.100877456 DT.100877466 DT.40121470 DT.431953 DT.121452224 DT.121452370 DT.121452219 DT.121452391 DT.95335382 DT.99986548 DT.100877447 DT.121452364 DT.70100695 DT.100044946 DT.121452312 DT.100877472 DT.101971391 DT.75132549 1 AceView cDNA sequence:AK127879
highest scoring ESTs for YARS:U89436 AA307563 AU077088 AW249253 BE256528 BE294655 BF102544 BI227347 BM560131 BQ360410 Unigene Cluster for YARS: Tyrosyl-tRNA synthetase Hs.706890 [show with all ESTs]Unigene Representative Sequence: AK125213
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for YARS (see all 6
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | · | 9c | ^ | 10 | ^ | 11 | ^ | 12a | · | 12b | ^ | 13 | ^ | 14a | · | 14b | |
| SP1: | |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | - |   | - |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for YARS
1 Ensembl transcript including schematic representation: ENST00000373477
|
Expression for YARS
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| YARS expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for YARS
1 / 2 / 3 3 probe-sets matching YARS gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ACCAAGCTGG
SOURCE GeneReport for Unigene cluster: Hs.706890
Expression variation in blood from EXPOLDB for YARS |
Orthologs for YARS
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for YARS gene from 5/21 species (see all 21
)
About this table Species with no ortholog for YARS
ENSEMBL Gene Tree for YARS | Paralogs for YARS(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for YARS gene
- ENSG000001640222
|
SNPs/Variants for YARS(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for YARS (up to first 250kb)
|
Disorders & Mutations for YARS
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 603623 disorders: 608323 UniProtKB/Swiss-Prot: SYYC_HUMAN, P54577
Defects in YARS are the cause of Charcot-Marie-Tooth disease dominant intermediate type C (CMTDIC) [MIM:608323]. CMTDIC is a form of Charcot-Marie-Tooth disease characterized by clinical and pathologic features intermediate between demyelinating and axonal peripheral neuropathies, and motor median nerve conduction velocities ranging from 25 to 45 m/sec1 Novoseek disease relationship for YARS gene
About this table
Human Gene Mutation Database: YARS
|
Medical News for YARS(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for YARS (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/80 PubMed articles for YARS gene (see all 80
):- Human tyrosyl-tRNA synthetase shares amino acid sequence homology with a putative cytokine. (PubMed id 9162081)1, 2, 3, 4 Kleeman T.A....First E.A. (1997)
- Evidence that two present-day components needed for the genetic code appeared after nucleated cells separated from eubacteria. (PubMed id 8552597)2, 3, 4 Ribas de Pouplana L.... Schimmel P. (1996)
- Crystal structure of a human aminoacyl-tRNA synthetase cytokine. (PubMed id 12427973)1, 3, 4 Yang X.-L.... Schimmel P. (2002)
- Crystal structures that suggest late development of genetic code components for differentiating aromatic side chains. (PubMed id 14671330)1, 3, 4 Yang X.-L....Ribas de Pouplana L. (2003)
- Disrupted function and axonal distribution of mutant tyrosyl-tRNA synthetase in dominant intermediate Charcot-Marie-Tooth neuropathy. (PubMed id 16429158)3, 4 Jordanova A....Timmerman V. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801)3, 4 Gevaert K.... Vandekerckhove J. (2003)
- Catalysis of tyrosyl-adenylate formation by the human tyrosyl-tRNA synthetase. (PubMed id 11856731)1, 3 Austin J. and First E.A. (2002)
- Human mitochondrial TyrRS disobeys the tyrosine identity rules. (PubMed id 15840810)1, 3 Bonnefond L....Rudinger-Thirion J. (2005)
- Highly differentiated motifs responsible for two cytokine activities of a split human tRNA synthetase. (PubMed id 10438485)1, 3 Wakasugi K. and Schimmel P. (1999)
|
Search for YARS
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing YARS
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing YARS
(According to HUGE)
About This Section
| -- |
Specialized Databases showing YARS(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for YARS(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for YARS:

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Incremental update: 13 Oct 2009
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