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YAF2 Gene

protein-coding   GIFtS: 59

GC12M040839
YY1 associated factor 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
MGC41856 2
Descriptions
YY1 associated factor 2 2
External Ids
HGNC: 173631
Entrez Gene: 101382
UniProtKB: Q8IY573
Ensembl: ENSG000000151537
Search outside databases for aliases for YAF2 gene

Previous GC identifers: GC12M042627 GC12M042453 GC12M042269

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for YAF2:
The protein encoded by this gene interacts with YY1, a zinc finger protein involved in negative
regulation of muscle-restricted genes. This gene product itself contains a single N-terminal
C2-X10-C2 zinc finger, and in contrast to YY1, is up-regulated during myogenic differentiation. It
also facilitates proteolytic cleavage of YY1 by the calcium- activated protease, m-calpain,
suggesting a mechanism by which this protein antagonizes the negative effect of YY1. [provided by
RefSeq]

UniProtKB/Swiss-Prot: YAF2_HUMAN, Q8IY57
Function: Binds to MYC and inhibits MYC-mediated transactivation. Also binds to MYCN and enhances
MYCN-dependent transcriptional activation. Increases calpain 2-mediated proteolysis of YY1 in
vitro. Component of the E2F6.com-1 complex, a repressive complex that methylates 'Lys-9' of
histone H3, suggesting that it is involved in chromatin-remodeling

Gene Wiki entry for YAF2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the YAF2 gene  

Entrez Gene cytogenetic band: 12q12   Ensembl cytogenetic band:  12q12   HGNC cytogenetic band: 12q12

YAF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M040839:     (about GC identifiers)

Start:
40,837,173 bp from pter
End:
40,918,317 bp from pter
Size:
81,145 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000012.10  NT_029419.11  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: YAF2_HUMAN, Q8IY57 (See protein sequence)
Recommended Name: YY1-associated factor 2  
Size: 180 amino acids; 19901 Da
Subunit: Interacts with MYC, MYCN, RNF2/RING1B and YY1. Part of the E2F6.com-1 complex in G0 phase
composed of E2F6, MGA, MAX, TFDP1, CBX3, BAT8, EUHMTASE1, RING1, RNF2, MBLR, L3MBTL2 and YAF2
Subcellular location: Nucleus
PDB structures from and Proteopedia :
2D9G (3D)    
Secondary accessions: Q99710
Alternative splicing: 2 isoforms:  Q8IY57-1   Q8IY57-2   

Post-translational modifications:

  • Phosphorylated upon DNA damage, probably by ATM or ATR1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_005739.2  

    ENSEMBL proteins: 
    ENSP00000370165 ENSP00000328004 ENSP00000370167 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (YY1 associated factor 2)
    Human Recombinant Proteins from Abnova (YAF2)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622 intracellular IEA--
    GO:0005634 nucleus IDA11593398
    About this table

    Antibodies for YAF2: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for YAF2
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (YY1 associated factor 2), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (YAF2)
    Novus Biologicals Antibody for YAF2

    Assays for YAF2: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    1 InterPro domain/family:
     IPR001876 Znf_RanBP2


       GeneDecks  YAF2 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q8IY57

    ProtoNet protein and cluster: Q8IY57

    1 Blocks protein family: IPB001876 Zn-finger

    UniProtKB/Swiss-Prot: YAF2_HUMAN, Q8IY57
    Similarity: Contains 1 RanBP2-type zinc finger

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (YAF2)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (YAF2)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_005748

                  Applied Biosystems Silencer® siRNAs for YAF2

                  Sigma-Aldrich siRNA for YAF2  
                         Sigma-Aldrich shRNA for YAF2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for YAF2
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_005748
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_005748
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_001012424 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_005748

    UniProtKB/Swiss-Prot: YAF2_HUMAN, Q8IY57
    Function: Binds to MYC and inhibits MYC-mediated transactivation. Also binds to MYCN and enhances
    MYCN-dependent transcriptional activation. Increases calpain 2-mediated proteolysis of YY1 in
    vitro. Component of the E2F6.com-1 complex, a repressive complex that methylates 'Lys-9' of
    histone H3, suggesting that it is involved in chromatin-remodeling

    5 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003713 transcription coactivator activity IDA11593398
    GO:0003714 transcription corepressor activity IDA12706874
    GO:0005515 protein binding IPI9016636 11593398 12706874
    GO:0008270 zinc ion binding IEA--
    GO:0046872 metal ion binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  YAF2 


    5 Interacting proteins for YAF2 (Q8IY572 ENSP000003280043) via UniProtKB, MINT, and/or STRING
    InteractantInteraction Details
    GeneCardExternal ID(s)
    YY1P254902, ENSP000002622383MINT-15247 MINT-15246 STRING (score=.953)
    GABPB1ENSP000003702593STRING (score=.971)
    MYCNENSP000002810433STRING (score=.831)
    CAPN2ENSP000003558343STRING (score=.762)
    A1BGENSP000002631003STRING (score=.752)
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006355 regulation of transcription, DNA-dependent IEA--
    GO:0016481 negative regulation of transcription IDA12706874
    GO:0045941 positive regulation of transcription IDA11593398
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for YAF2

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (YAF2)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (YAF2)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_005748

                  Sigma-Aldrich siRNA for YAF2  
                         Sigma-Aldrich shRNA for YAF2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_005748  

    REFSEQ mRNAs for YAF2 gene: 

    NM_005748.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_005748  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_005748
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_005748
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_001012424 

    Additional cDNA sequence: 

    AK127531.1 AK291355.1 AK294260.1 AK296191.1 BC037777.2 BX649019.1 

    15 DOTS entries:

    DT.100713349  DT.95370291  DT.311602  DT.100785008  DT.95165738  DT.95193729  DT.91955631  DT.100718765 
    DT.121192305  DT.121192450  DT.87017814  DT.121192299  DT.95165737  DT.97837659  DT.91658529 

    24/116 AceView cDNA sequences (see all 116 ):

    BF477716 BX099756 AA384399 BU170747 BU541658 AI655607 BM023254 AA765439 
    AA568443 BM068838 Z39046 BP375794 F06147 BU543113 BM995328 F10745 
    BU619569 AW073893 BX649019 AI285403 AI078329 BE894451 AI743991 CK904670 

    highest scoring ESTs for YAF2:

    U72209 AA385199 AA568443 AA765439 AA804610 AI655607 AL135153 AU135339 AU137455 AU279420 

    Unigene Cluster for YAF2:

    YY1 associated factor 2
    Hs.708084  [show with all ESTs]
    Unigene Representative Sequence: AK127531


    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for YAF2 (see all 7 )

    ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8
    SP1:              -           -     -     -                 -     -         
    SP2:                                                                        
    SP3:              -           -     -     -     -     -     -     -         
    SP4:              -           -                                             
    SP5:                                                              -         

    About this scheme

    ECgene alternative splicing isoforms for YAF2

    3 Ensembl transcripts including schematic representations:
    ENST00000380788  ENST00000327791  ENST00000380790  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    YAF2 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for YAF2

    1 / 2 / 3

    9 probe-sets matching YAF2 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    38573_at2, 3 U95-A 1 1.00 1.00 0.73 1.18 U72209 0.80 1.00 0.91 1

    84310_at2, 3 U95-D 1 1.00 1.00 0.49 0.58 AA581867 0.40 1.00 0.76 1
    47089_at2, 3 U95-B 1 1.00 1.00 0.72 1.12 AA789222 0.40 1.00 0.76 1

    60776_at2, 3 U95-C 1 1.00 1.00 0.49 1.43 AA765439 0.60 1.00 0.82 1

    817_at2, 3 U95-A 1 1.00 1.00 0.81 0.73 U72209 0.80 1.00 0.91 1

    206238_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_005748 0.60 1.00 0.82 1

    244783_at2, 3 U133-B 1 1.00 1.00 -- -- R56794 0.40 1.00 0.76 1

    206238_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    244783_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  YAF2 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TGGTAATGTA

    SOURCE GeneReport for Unigene cluster: Hs.708084

    Expression variation in blood from EXPOLDB for YAF2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for YAF2 gene from 5/10 species (see all 10 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    YAF21   -- YY1 associated factor 2 97.67(n)
    100(a)
    609790  XM_847127.1  XP_852220.1 
    chimpanzee
    (Pan troglodytes)
    YAF21   -- YY1 associated factor 2 99.81(n)
    100(a)
    466958  XM_001167723.1  XP_001167723.1 
    cow
    (Bos taurus)
    YAF21   -- YY1 associated factor 2 97.04(n)
    100(a)
    536696  NM_001076079.1  NP_001069547.1 
    rat
    (Rattus norvegicus)
    Yaf21   -- YY1 associated factor 2 86.85(n)
    92.22(a)
    690262  XM_001073895.1  XP_001073895.1 
    mouse
    (Mus musculus)
    Yaf21, 5 155
    YY1 associated factor 21, 5 86.03(n)1
    92.18(a)1
    670571  NM_024189.51  NP_077151.31 
     AA4269275  AB1004525  (see all 18)
    About this table        Species with no ortholog for YAF2

    ENSEMBL Gene Tree for YAF2
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for YAF2 gene
    RYBP2  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/427 NCBI SNPs in YAF2 are shown (see all 427 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 125)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 12 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs79574011,2
    A,C,F,H40919570(+) TTTCTG/TTCCAT 1 -- ng318Minor allele frequency- T:0.03EU EA WA 830
    --
    rs108802751,2
    A,C,F,H40919018(+) GGCTAC/TATAAT 1 -- ng314Minor allele frequency- T:0.20EU EA WA 412
    rs24065671,2
    A,C,F40837746(+) TTTAGG/CAAAGC 1 -- ut31 ese33Minor allele frequency- C:0.39NA 142
    rs111813551,2
    C,F,H40838113(+) ACAGAG/AAAAAA 1 -- ut31 ese311Minor allele frequency- A:0.04EU EA WA NA 956
    rs22905391,2
    F,H40839486(+) TTAAAT/CAGTTG 1 -- ut314Minor allele frequency- C:0.04EU EA WA 418
    rs124251061,2
    F,H40836710(+) TGCCTG/ATGATA 1 -- ng514Minor allele frequency- A:0.01EU EA WA 420
    rs111813541,2
    F,H40837106(+) AGTAGC/GAGAGC 1 -- ng514Minor allele frequency- G:0.03EU EA WA 412
    --
    rs24065681,2
    A,C40838564(+) GGATTC/GACTTA 1 -- ut31 ese30--------
    --
    rs118298831,2
    A,C40919954(+) cgggcA/Gcctgt 1 -- ng310--------
    --
    rs44173701,2
    C40920012(+) AGAGTC/GAGAGG 1 -- ng310--------
    About this table

    HapMap Linkage Disequilibrium images for YAF2 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 607534

    Human Genome Epidemiology Navigator: YAF2 (1 document)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/12 PubMed articles for YAF2 gene (see all 12 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 10138 HGNC: 17363 AceView: YAF2 Ensembl:ENSG00000015153 euGenes: HUgn10138
    ECgene: YAF2 H-InvDB: YAF2
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for YAF2 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for YAF2:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for YAF2 Antibodies for YAF2
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
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