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Aliases & Descriptions for XYLT1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 2.4.2.26 3 | | XT-I 1, 2, 3 | | XT1 2, 3, 5 | | XylT-I 3 |
| | | Descriptions |
|---|
| O-xylosyltransferase 1 2 | | Peptide O-xylosyltransferase 1 3 | UDP-D-xylose:proteoglycan core protein beta-D-xylosyltransferase 1 2 | | xylosyltransferase I 2, 3 |
|
| | Search outside databases for aliases for XYLT1 genePrevious GC identifers: GC16P017598 GC16P016874 GC16M017128 GC16M017167 |
Summaries for XYLT1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for XYLT1: Xylosyltransferase (XT; EC 2.4.2.26) catalyzes the transfer of UDP-xylose to serine residues within XT recognition sequences of target proteins. Addition of this xylose to the core protein is required for the biosynthesis of the glycosaminoglycan chains characteristic of proteoglycans.[supplied by OMIM] UniProtKB/Swiss-Prot: XYLT1_HUMAN, Q86Y38Function: Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytesGene Wiki entry for XYLT1 |
Genomic Location for XYLT1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the XYLT1 gene 
Entrez Gene cytogenetic band: 16p12.3 Ensembl cytogenetic band: 16p12.3 HGNC cytogenetic band: 16p12XYLT1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16M017108:
(about GC identifiers)
Start:
|
17,103,682 bp from pter |
End:
|
17,472,239 bp from pter |
Size:
|
368,558 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000016.8 NT_010393.15
| Proteins for XYLT1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: XYLT1_HUMAN, Q86Y38 (See
protein sequence)Recommended Name: Xylosyltransferase 1 Size: 959 amino acids; 107569 Da
Cofactor: Divalent cations
Subunit: Monomer
Subcellular location: Endoplasmic reticulum membrane; Single-pass type II membrane protein (By similarity). Golgi apparatus membrane; Single-pass type II membrane protein (By similarity). Secreted (Probable). Note=Some fraction is also found in the extracellular space together with chondroitin sulfate proteoglycans, suggesting that it can be secreted
Miscellaneous: Activity is strongly reduced in seminal plasma of unfertile men
Secondary accessions: Q9H1B6Post-translational modifications:
Contains 7 disulfide bonds1
N-glycosylated1
REFSEQ proteins: NP_071449.1
ENSEMBL proteins: ENSP00000261381
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/8 Gene Ontology (GO) cellular component terms (links to tree view) (see all 8
): About this table
Antibodies for XYLT1: Assays for XYLT1: | Protein
Domains/ Families for XYLT1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q86Y38
ProtoNet protein and cluster: Q86Y38 1 Blocks protein family: IPB003406 Glycosyl transferase
UniProtKB/Swiss-Prot: XYLT1_HUMAN, Q86Y38Similarity: Belongs to the glycosyltransferase 14 family. XylT subfamily | Gene Function for XYLT1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_022166
Applied Biosystems Silencer® siRNAs for XYLT1
Sigma-Aldrich siRNA for XYLT1  Sigma-Aldrich shRNA for XYLT1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_022166                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_022166                                  untagged cDNA clone in CMV expression vector: NM_022166 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_022166
UniProtKB/Swiss-Prot: XYLT1_HUMAN, Q86Y38Function: Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytesCatalytic activity: Transfers a beta-D-xylosyl residue from UDP-D-xylose to the serine hydroxy group of an acceptor protein substrateBiophysicochemical properties: Kinetic parameters: KM=0.9 uM for recombinant bikunin; Vmax=764 pmol/h/mg enzyme with recombinant bikunin as substrate;Enzyme Number (IUBMB): EC 2.4.2.26 3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008375 | acetylglucosaminyltransferase activity |
IEA | -- | | GO:0016757 | transferase activity, transferring glycosyl groups |
IEA | -- | | GO:0030158 | protein xylosyltransferase activity |
TAS | 11099377 | About this table | Pathways & Interactions for XYLT1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for XYLT1 (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: XYLT1_HUMAN, Q86Y38Pathway: Glycan metabolism; chondroitin sulfate biosynthesisPathway: Glycan metabolism; heparan sulfate biosynthesis 2 Interacting proteins for XYLT1 (ENSP000002613813) via UniProtKB, MINT, and/or STRINGAbout this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006024 | glycosaminoglycan biosynthetic process |
TAS | 11099377 | About this table
|
Drugs & Compounds for XYLT1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for XYLT1 7 Novoseek chemical compound relationships for XYLT1 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| udpxylose |
92.11 |
8 |
16569644 (1), 11099377 (1), 17437056 (1), 14680799 (1) (see all 6) |
| glycosaminoglycan |
82.57 |
31 |
17189265 (2), 17635914 (2), 15607938 (1), 18294457 (1) (see all 14) |
| xylose |
77.83 |
12 |
16376579 (1), 16569644 (1), 11099377 (1), 17189265 (1) (see all 9) |
| chondroitin |
74.08 |
1 |
17597120 (1) |
| chondroitin sulfate |
57.03 |
3 |
17189265 (1), 17597120 (1), 16778156 (1) |
| tetrasaccharide |
56.92 |
2 |
17189265 (1) |
| heparan sulfate |
53.68 |
2 |
17189265 (1), 16778156 (1) |
About this table
|
Transcripts for XYLT1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_022166
Sigma-Aldrich siRNA for XYLT1  Sigma-Aldrich shRNA for XYLT1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_022166 REFSEQ mRNAs for XYLT1 gene: NM_022166.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_022166               OriGene GFP tagged cDNA clone in CMV expression vector: NM_022166                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_022166                                  untagged cDNA clone in CMV expression vector: NM_022166  Additional cDNA sequence: AJ277441.1 AJ539163.1 AK000198.1 AL050125.1 BC036692.2 BC045778.1 BX647541.1 4 DOTS entries: DT.100000180 DT.40117559 DT.92416000 DT.40117558 8 AceView cDNA sequences:AW103848 BU620961 BF516337 AA872053 AW009370 BX102244 AW377833 AA504612
highest scoring ESTs for XYLT1:AJ539163 BE676842 AA181159 AI524006 AJ277441 AK000198 AL707022 BE158827 BE832450 BF733896 Unigene Cluster for XYLT1: Xylosyltransferase I Hs.22907 [show with all ESTs]Unigene Representative Sequence: NM_022166
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000261381
|
Expression for XYLT1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| XYLT1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for XYLT1
1 / 2 / 3 5 probe-sets matching XYLT1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGTAGGATGT
SOURCE GeneReport for Unigene cluster: Hs.22907 UniProtKB/Swiss-Prot: XYLT1_HUMAN, Q86Y38Tissue specificity: Widely expressed. Expressed at higher level in placenta, kidney and pancreas. Weakly expressed in skeletal muscle |
Orthologs for XYLT1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for XYLT1 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for XYLT1
ENSEMBL Gene Tree for XYLT1 | Paralogs for XYLT1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for XYLT1 gene
- XYLT22
|
SNPs/Variants for XYLT1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for XYLT1 (up to first 250kb)
|
Disorders & Mutations for XYLT1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 608124 disorders: 264800 3 Novoseek disease relationships for XYLT1 gene
About this table
Human Gene Mutation Database: XYLT1 Genetic Association Database: XYLT1 Human Genome Epidemiology Navigator: XYLT1 (6 documents)
|
Medical News for XYLT1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for XYLT1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/40 PubMed articles for XYLT1 gene (see all 40
):- Molecular cloning and expression of human UDP-D-xylose:proteoglycan core protein beta-D-xylosyltransferase and its first isoform XT-II. (PubMed id 11099377)1, 2, 3, 4 Goetting C.... Kleesiek K. (2000)
- Human xylosyltransferase I: functional and biochemical characterization of cysteine residues required for enzymic activity. (PubMed id 15461586)1, 3, 4 Mueller S.... Kleesiek K. (2005)
- Analysis of the DXD motifs in human xylosyltransferase I required for enzyme activity. (PubMed id 15294915)1, 3, 4 Goetting C.... Kleesiek K. (2004)
- Impact of polymorphisms in the genes encoding xylosyltransferase I and a homologue in type 1 diabetic patients with and without nephropathy. (PubMed id 16164625)1, 3, 6 Schon S....Gotting C. (2005)
- Xylosyltransferase activity in seminal plasma of infertile men. (PubMed id 11814476)3, 4 Goetting C.... Kleesiek K. (2002)
- First isolation of human UDP-D-xylose: proteoglycan core protein beta-D-xylosyltransferase secreted from cultured JAR choriocarcinoma cells. (PubMed id 11087729)3, 4 Kuhn J....Kleesiek K. (2001)
- Serum xylosyltransferase: a new biochemical marker of the sclerotic process in systemic sclerosis. (PubMed id 10383739)3, 4 Goetting C.... Kleesiek K. (1999)
- Transforming growth factor beta1-regulated xylosyltransferase I activity in human cardiac fibroblasts and its impact for myocardial remodeling. (PubMed id 17635914)1, 3 Prante C....Gotting C. (2007)
- Cloning and recombinant expression of active full-length xylosyltransferase I (XT-I) and characterization of subcellular localization of XT-I and XT-II. (PubMed id 16569644)1, 3 Schon S....Gotting C. (2006)
- Elevated xylosyltransferase I activities in pseudoxanthoma elasticum (PXE) patients as a marker of stimulated proteoglycan biosynthesis. (PubMed id 16133423)1, 3 Gotting C....Kleesiek K. (2005)
|
Search for XYLT1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing XYLT1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing XYLT1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing XYLT1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| GGDB | http://riodb.ibase.aist.go.jp/rcmg/ggdb/Homolog?cat=symbol&symbol=XYLT1 |
|
| | | About This Section
| --
| Services for XYLT1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for XYLT1:

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Incremental update: 13 Oct 2009
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