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Aliases for XYLT1 Gene

Aliases for XYLT1 Gene

  • Xylosyltransferase I 2 3 4
  • XT1 3 4 6
  • Peptide O-Xylosyltransferase 1 3 4
  • EC 2.4.2.26 4 63
  • XylT-I 3 4
  • XT-I 3 4
  • Protein Xylosyltransferase 1 2
  • Beta-D-Xylosyltransferase 1 3
  • Xylosyltransferase Iota 3
  • O-Xylosyltransferase 1 3
  • Xylosyltransferase 1 3
  • PXYLT1 3
  • DBQD2 3
  • XYLTI 3
  • XTI 3

External Ids for XYLT1 Gene

Previous GeneCards Identifiers for XYLT1 Gene

  • GC16P017598
  • GC16P016874
  • GC16M017128
  • GC16M017167
  • GC16M017108
  • GC16M017103
  • GC16M017196
  • GC16M016198

Summaries for XYLT1 Gene

Entrez Gene Summary for XYLT1 Gene

  • This locus encodes a xylosyltransferase enzyme. The encoded protein catalyzes transfer of UDP-xylose to serine residues of an acceptor protein substrate. This transfer reaction is necessary for biosynthesis of glycosaminoglycan chains. Mutations in this gene have been associated with increased severity of pseudoxanthoma elasticum.[provided by RefSeq, Nov 2009]

GeneCards Summary for XYLT1 Gene

XYLT1 (Xylosyltransferase I) is a Protein Coding gene. Diseases associated with XYLT1 include desbuquois dysplasia 2 and xylt1-cdg. Among its related pathways are Metabolism and Spinal Cord Injury. GO annotations related to this gene include acetylglucosaminyltransferase activity and protein xylosyltransferase activity. An important paralog of this gene is GCNT1.

UniProtKB/Swiss-Prot for XYLT1 Gene

  • Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes

Gene Wiki entry for XYLT1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XYLT1 Gene

Genomics for XYLT1 Gene

Regulatory Elements for XYLT1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for XYLT1 Gene

Start:
17,101,769 bp from pter
End:
17,470,881 bp from pter
Size:
369,113 bases
Orientation:
Minus strand

Genomic View for XYLT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for XYLT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XYLT1 Gene

Proteins for XYLT1 Gene

  • Protein details for XYLT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86Y38-XYLT1_HUMAN
    Recommended name:
    Xylosyltransferase 1
    Protein Accession:
    Q86Y38
    Secondary Accessions:
    • Q9H1B6

    Protein attributes for XYLT1 Gene

    Size:
    959 amino acids
    Molecular mass:
    107569 Da
    Cofactor:
    Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240;
    Quaternary structure:
    • Monomer.
    Miscellaneous:
    • Activity is strongly reduced in seminal plasma of unfertile men

neXtProt entry for XYLT1 Gene

Proteomics data for XYLT1 Gene at MOPED

Post-translational modifications for XYLT1 Gene

Other Protein References for XYLT1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains for XYLT1 Gene

Protein Domains for XYLT1 Gene

Suggested Antigen Peptide Sequences for XYLT1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86Y38

UniProtKB/Swiss-Prot:

XYLT1_HUMAN :
  • Q86Y38
Family:
  • Belongs to the glycosyltransferase 14 family. XylT subfamily.
genes like me logo Genes that share domains with XYLT1: view

No data available for Gene Families for XYLT1 Gene

Function for XYLT1 Gene

Molecular function for XYLT1 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties: Kinetic parameters: KM=0.9 uM for recombinant bikunin {ECO:0000269 PubMed:15294915, ECO:0000269 PubMed:15461586}; Vmax=764 pmol/h/mg enzyme with recombinant bikunin as substrate {ECO:0000269 PubMed:15294915, ECO:0000269 PubMed:15461586};
UniProtKB/Swiss-Prot CatalyticActivity: Transfers a beta-D-xylosyl residue from UDP-D-xylose to the serine hydroxy group of an acceptor protein substrate
UniProtKB/Swiss-Prot Function: Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes

Enzyme Numbers (IUBMB) for XYLT1 Gene

Gene Ontology (GO) - Molecular Function for XYLT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008375 acetylglucosaminyltransferase activity IEA --
GO:0030158 protein xylosyltransferase activity TAS 11099377
genes like me logo Genes that share ontologies with XYLT1: view

Phenotypes for XYLT1 Gene

GenomeRNAi human phenotypes for XYLT1:
genes like me logo Genes that share phenotypes with XYLT1: view

Animal Model Products

CRISPR Products

miRNA for XYLT1 Gene

miRTarBase miRNAs that target XYLT1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for XYLT1

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for XYLT1 Gene

Localization for XYLT1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for XYLT1 Gene

Endoplasmic reticulum membrane; Single-pass type II membrane protein. Golgi apparatus membrane; Single-pass type II membrane protein. Secreted. Note=Some fraction is also found in the extracellular space together with chondroitin sulfate proteoglycans, suggesting that it can be secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for XYLT1 Gene COMPARTMENTS Subcellular localization image for XYLT1 gene
Compartment Confidence
endoplasmic reticulum 5
golgi apparatus 5
extracellular 4
lysosome 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for XYLT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IDA 16571645
GO:0005576 extracellular region IEA --
GO:0005783 endoplasmic reticulum --
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0016020 membrane --
genes like me logo Genes that share ontologies with XYLT1: view

Pathways for XYLT1 Gene

genes like me logo Genes that share pathways with XYLT1: view

UniProtKB/Swiss-Prot Q86Y38-XYLT1_HUMAN

  • Pathway: Glycan metabolism; chondroitin sulfate biosynthesis
  • Pathway: Glycan metabolism; heparan sulfate biosynthesis

Interacting Proteins for XYLT1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000261381%0d%0a9606.ENSP00000029410%0d%0a
Selected Interacting proteins: ENSP00000261381 Q86Y38-XYLT1_HUMAN for XYLT1 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for XYLT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006024 glycosaminoglycan biosynthetic process TAS 11099377
GO:0015012 heparan sulfate proteoglycan biosynthetic process IEA --
GO:0030206 chondroitin sulfate biosynthetic process IEA --
GO:0034605 cellular response to heat IEA --
genes like me logo Genes that share ontologies with XYLT1: view

Compounds for XYLT1 Gene

(2) HMDB Compounds for XYLT1 Gene

Compound Synonyms Cas Number PubMed IDs
Dermatan
  • Chondroitin sulfate B
24967-94-0
UDP-D-Xylose
  • UDP-D-xylose
3616-06-6

(10) Novoseek inferred chemical compound relationships for XYLT1 Gene

Compound -log(P) Hits PubMed IDs
udpxylose 92.4 6
glycosaminoglycan 82.6 18
xylose 77.3 9
chondroitin 72.5 1
tetrasaccharide 54.8 1
genes like me logo Genes that share compounds with XYLT1: view

Transcripts for XYLT1 Gene

mRNA/cDNA for XYLT1 Gene

(7) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for XYLT1 Gene

Xylosyltransferase I:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for XYLT1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for XYLT1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for XYLT1 Gene

No ASD Table

Relevant External Links for XYLT1 Gene

GeneLoc Exon Structure for
XYLT1
ECgene alternative splicing isoforms for
XYLT1

Expression for XYLT1 Gene

mRNA expression in normal human tissues for XYLT1 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for XYLT1 Gene

SOURCE GeneReport for Unigene cluster for XYLT1 Gene Hs.22907

mRNA Expression by UniProt/SwissProt for XYLT1 Gene

Q86Y38-XYLT1_HUMAN
Tissue specificity: Widely expressed. Expressed at higher level in placenta, kidney and pancreas. Weakly expressed in skeletal muscle.
genes like me logo Genes that share expressions with XYLT1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for XYLT1 Gene

Orthologs for XYLT1 Gene

This gene was present in the common ancestor of animals.

Orthologs for XYLT1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia XYLT1 35
  • 99.19 (n)
  • 99.36 (a)
XYLT1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia XYLT1 35
  • 89.47 (n)
  • 93.33 (a)
XYLT1 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia XYLT1 35
  • 88.48 (n)
  • 91.65 (a)
XYLT1 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Xylt1 35
  • 86.77 (n)
  • 91.13 (a)
Xylt1 16
Xylt1 36
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia XYLT1 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia XYLT1 36
  • 81 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Xylt1 35
  • 87.52 (n)
  • 93.19 (a)
chicken
(Gallus gallus)
Aves XYLT1 35
  • 78.14 (n)
  • 85.21 (a)
XYLT1 36
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia XYLT1 36
  • 53 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.17213 35
tropical clawed frog
(Silurana tropicalis)
Amphibia xylt1 35
zebrafish
(Danio rerio)
Actinopterygii xylt1 35
  • 69.81 (n)
  • 71.57 (a)
xylt1 36
  • 68 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005811 35
  • 50.8 (n)
  • 41.34 (a)
fruit fly
(Drosophila melanogaster)
Insecta oxt 35
  • 53.03 (n)
  • 43.09 (a)
oxt 36
  • 35 (a)
OneToMany
oxt 37
  • 41 (a)
worm
(Caenorhabditis elegans)
Secernentea sqv-6 36
  • 25 (a)
OneToMany
Y50D4C.4 37
  • 39 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 40 (a)
OneToMany
Species with no ortholog for XYLT1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for XYLT1 Gene

ENSEMBL:
Gene Tree for XYLT1 (if available)
TreeFam:
Gene Tree for XYLT1 (if available)

Paralogs for XYLT1 Gene

Paralogs for XYLT1 Gene

Selected SIMAP similar genes for XYLT1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with XYLT1: view

Variants for XYLT1 Gene

Sequence variations from dbSNP and Humsavar for XYLT1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs16662 -- 17,102,766(-) AAAAA(-/AG/GA)AATCT utr-variant-3-prime
rs722074 -- 17,240,514(-) tgtca(C/T)gtaga intron-variant
rs722075 -- 17,240,642(-) GGTCC(C/T)GAAGA intron-variant
rs748348 -- 17,456,586(+) tcttc(C/T)cacct intron-variant
rs748349 -- 17,456,927(+) tgcca(C/T)gtagt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for XYLT1 Gene

Variant ID Type Subtype PubMed ID
nsv435664 CNV Deletion 17901297
esv2714015 CNV Deletion 23290073
nsv457428 CNV Gain 19166990
dgv2631n71 CNV Gain 21882294
nsv7278 OTHER Inversion 18451855
nsv905506 CNV Loss 21882294
nsv905509 CNV Gain 21882294
nsv905510 CNV Gain 21882294
esv2751550 CNV Gain 17911159
nsv833153 CNV Gain 17160897
esv2714035 CNV Deletion 23290073
esv1009408 CNV Deletion 20482838
esv1343982 CNV Deletion 17803354
esv2714036 CNV Deletion 23290073
esv2714037 CNV Deletion 23290073
nsv103826 CNV Loss 16902084
nsv905514 CNV Gain 21882294
esv268467 CNV Insertion 20981092
nsv1749 CNV Loss 18451855
nsv905515 CNV Gain 21882294
nsv833154 CNV Loss 17160897
nsv905516 CNV Loss 21882294
dgv482e199 CNV Deletion 23128226
esv2714038 CNV Deletion 23290073
dgv465n67 CNV Loss 20364138
nsv905517 CNV Gain 21882294
dgv820e1 CNV Complex 17122850
esv587 CNV CNV 17122850
esv270381 CNV Insertion 20981092
nsv1750 CNV Insertion 18451855
nsv827580 CNV Gain 20364138

Relevant External Links for XYLT1 Gene

HapMap Linkage Disequilibrium report
XYLT1
Human Gene Mutation Database (HGMD)
XYLT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for XYLT1 Gene

Disorders for XYLT1 Gene

(1) OMIM Diseases for XYLT1 Gene (608124)

UniProtKB/Swiss-Prot

XYLT1_HUMAN
  • Desbuquois dysplasia 2 (DBQD2) [MIM:615777]: A chondrodysplasia characterized by severe prenatal and postnatal growth retardation (less than -5 SD), joint laxity, short extremities, progressive scoliosis, round face, midface hypoplasia, prominent bulging eyes. The main radiologic features are short long bones with metaphyseal splay, a Swedish key appearance of the proximal femur (exaggerated trochanter), and advance carpal and tarsal bone age. Two forms of Desbuquois dysplasia are distinguished on the basis of the presence or absence of characteristic hand anomalies: an extra ossification center distal to the second metacarpal, delta phalanx, bifid distal thumb phalanx, and phalangeal dislocations. {ECO:0000269 PubMed:23982343, ECO:0000269 PubMed:24581741}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(2) University of Copenhagen DISEASES for XYLT1 Gene

(3) Novoseek inferred disease relationships for XYLT1 Gene

Disease -log(P) Hits PubMed IDs
pseudoxanthoma elasticum 69.6 2
diabetic nephropathies 44.1 3
sclerosis systemic 39.7 1

Relevant External Links for XYLT1

Genetic Association Database (GAD)
XYLT1
Human Genome Epidemiology (HuGE) Navigator
XYLT1
genes like me logo Genes that share disorders with XYLT1: view

Publications for XYLT1 Gene

  1. Molecular cloning and expression of human UDP-D-xylose:proteoglycan core protein beta-D-xylosyltransferase and its first isoform XT-II. (PMID: 11099377) Goetting C. … Kleesiek K. (J. Mol. Biol. 2000) 2 3 4 23
  2. Impact of polymorphisms in the genes encoding xylosyltransferase I and a homologue in type 1 diabetic patients with and without nephropathy. (PMID: 16164625) SchAPn S. … GAPtting C. (Kidney Int. 2005) 3 23 48
  3. Analysis of the DXD motifs in human xylosyltransferase I required for enzyme activity. (PMID: 15294915) Goetting C. … Kleesiek K. (J. Biol. Chem. 2004) 3 4 23
  4. Human xylosyltransferase I: functional and biochemical characterization of cysteine residues required for enzymic activity. (PMID: 15461586) Mueller S. … Kleesiek K. (Biochem. J. 2005) 3 4 23
  5. Polymorphisms in the xylosyltransferase genes cause higher serum XT-I activity in patients with pseudoxanthoma elasticum (PXE) and are involved in a severe disease course. (PMID: 16571645) SchAPn S. … GAPtting C. (J. Med. Genet. 2006) 3 4 23

Products for XYLT1 Gene

Sources for XYLT1 Gene

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