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Aliases for XXYLT1-AS2 Gene

Subcategory (RNA class) for XXYLT1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for XXYLT1-AS2 Gene

  • XXYLT1 Antisense RNA 2 2 3 5
  • XXYLT1 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for XXYLT1-AS2 Gene

Previous GeneCards Identifiers for XXYLT1-AS2 Gene

  • GC03P194869

Summaries for XXYLT1-AS2 Gene

GeneCards Summary for XXYLT1-AS2 Gene

XXYLT1-AS2 (XXYLT1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XXYLT1-AS2 Gene

Genomics for XXYLT1-AS2 Gene

Regulatory Elements for XXYLT1-AS2 Gene

Enhancers for XXYLT1-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F195097 1.8 FANTOM5 Ensembl ENCODE 16.8 -45.8 -45755 10.2 HDGF ARNT MLX ARID4B FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF143 XXYLT1-AS2 SDHAP2 RN7SL36P LSG1 FAM43A PPP1R2 ACAP2 XXYLT1-AS1 MIR3137
GH03F195115 1.5 FANTOM5 Ensembl ENCODE 18.5 -29.0 -28973 5.9 ATF1 ARNT FEZF1 ELK1 GATA2 FOS NCOA1 CREB3 MEF2D SMARCA4 XXYLT1-AS2 XXYLT1 RN7SL36P LSG1 XXYLT1-AS1 FAM43A ATP13A3 MIR3137
GH03F195177 1.6 FANTOM5 Ensembl ENCODE 11.9 +33.0 32970 7.1 HDGF PKNOX1 ATF1 ZNF121 GATA2 FOS NCOA1 REST CREB3 MEF2D XXYLT1 ENSG00000231443 RNU6-25P ENSG00000260261 RN7SL36P XXYLT1-AS2 ENSG00000271662 LOC105374296 GC03P195215
GH03F195185 1.5 FANTOM5 Ensembl ENCODE 11.6 +39.2 39216 3.9 HDGF TBP PKNOX1 RAD21 RARA ZNF366 RCOR1 ETV6 FOS EGR2 RNU6-25P XXYLT1 XXYLT1-AS2 RN7SL36P XXYLT1-AS1 GC03P195215 LOC105374296
GH03F195203 1.5 FANTOM5 Ensembl ENCODE 11.3 +56.9 56865 2.7 HDGF HDAC1 PKNOX1 CBX3 ATF1 INSM2 FEZF1 EGR2 ZBTB2 CEBPB ENSG00000238031 LINC01972 ENSG00000233987 MIR570 RN7SL36P XXYLT1-AS2 LSG1 XXYLT1 XXYLT1-AS1 ENSG00000271662
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around XXYLT1-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for XXYLT1-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001856567 129 401 TBP IRF2 ASH2L ZMYM3 EBF1 RELA POLR2A ADNP CREM MTA2

Genomic Location for XXYLT1-AS2 Gene

Chromosome:
3
Start:
195,147,871 bp from pter
End:
195,152,856 bp from pter
Size:
4,986 bases
Orientation:
Plus strand

Genomic View for XXYLT1-AS2 Gene

Genes around XXYLT1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
XXYLT1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for XXYLT1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XXYLT1-AS2 Gene

Proteins for XXYLT1-AS2 Gene

Post-translational modifications for XXYLT1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for XXYLT1-AS2 Gene

Domains & Families for XXYLT1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for XXYLT1-AS2 Gene

Function for XXYLT1-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for XXYLT1-AS2 Gene

Localization for XXYLT1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for XXYLT1-AS2 Gene

Pathways & Interactions for XXYLT1-AS2 Gene

SuperPathways for XXYLT1-AS2 Gene

No Data Available

Interacting Proteins for XXYLT1-AS2 Gene

Gene Ontology (GO) - Biological Process for XXYLT1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for XXYLT1-AS2 Gene

Transcripts for XXYLT1-AS2 Gene

mRNA/cDNA for XXYLT1-AS2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for XXYLT1-AS2 Gene

No ASD Table

Relevant External Links for XXYLT1-AS2 Gene

GeneLoc Exon Structure for
XXYLT1-AS2
ECgene alternative splicing isoforms for
XXYLT1-AS2

Expression for XXYLT1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for XXYLT1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for XXYLT1-AS2 Gene

This gene is overexpressed in Stomach (x4.4).
genes like me logo Genes that share expression patterns with XXYLT1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for XXYLT1-AS2 Gene

Orthologs for XXYLT1-AS2 Gene

Evolution for XXYLT1-AS2 Gene

ENSEMBL:
Gene Tree for XXYLT1-AS2 (if available)
TreeFam:
Gene Tree for XXYLT1-AS2 (if available)

No data available for Orthologs for XXYLT1-AS2 Gene

Paralogs for XXYLT1-AS2 Gene

No data available for Paralogs for XXYLT1-AS2 Gene

Variants for XXYLT1-AS2 Gene

Sequence variations from dbSNP and Humsavar for XXYLT1-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10049292 -- 195,146,400(+) TGCAA(A/C)AAAGC intron-variant, upstream-variant-2KB
rs10933698 -- 195,147,640(+) GAAAG(C/T)AACTT intron-variant, upstream-variant-2KB
rs10933699 -- 195,148,662(+) GTCAC(A/G)CTAAC intron-variant, nc-transcript-variant
rs111329348 -- 195,147,699(+) GCACC(A/G)CGGAG intron-variant, upstream-variant-2KB
rs111598187 -- 195,150,860(+) CACAC(A/G)CACAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for XXYLT1-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3599226 CNV gain 21293372
nsv1001492 CNV gain 25217958
nsv1009796 CNV gain 25217958
nsv1123726 CNV deletion 24896259
nsv436791 CNV insertion 17901297
nsv461126 CNV loss 19166990
nsv592981 CNV loss 21841781
nsv592982 CNV loss 21841781

Relevant External Links for XXYLT1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
XXYLT1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for XXYLT1-AS2 Gene

Disorders for XXYLT1-AS2 Gene

Relevant External Links for XXYLT1-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
XXYLT1-AS2

No disorders were found for XXYLT1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for XXYLT1-AS2 Gene

Publications for XXYLT1-AS2 Gene

  1. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams M.D. … White O. (Nature 1995) 3 64

Products for XXYLT1-AS2 Gene

Sources for XXYLT1-AS2 Gene

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