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Aliases for XXYLT1-AS1 Gene

Subcategory (RNA class) for XXYLT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for XXYLT1-AS1 Gene

  • XXYLT1 Antisense RNA 1 2 3 5
  • XXYLT1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for XXYLT1-AS1 Gene

Previous GeneCards Identifiers for XXYLT1-AS1 Gene

  • GC03P194816

Summaries for XXYLT1-AS1 Gene

GeneCards Summary for XXYLT1-AS1 Gene

XXYLT1-AS1 (XXYLT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for XXYLT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XXYLT1-AS1 Gene

Genomics for XXYLT1-AS1 Gene

Regulatory Elements for XXYLT1-AS1 Gene

Enhancers for XXYLT1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H195115 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +24.3 24311 5 FOXA2 ATF1 ARNT TCF12 GATA2 ELK1 FOS ATF7 NCOA1 REST XXYLT1-AS2 XXYLT1 RN7SL36P LSG1 XXYLT1-AS1 FAM43A ATP13A3 MIR3137
GH03H195185 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +92.5 92499 3 TBP HDGF PKNOX1 ARNT BMI1 RAD21 ZBTB7B ZNF366 RCOR1 ETV6 RNU6-25P XXYLT1 XXYLT1-AS2 RN7SL36P XXYLT1-AS1 GC03P195215 LOC105374296
GH03H195203 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +110.1 110148 2 HDGF PKNOX1 ATF1 FEZF1 ATF7 ZNF592 MAFF ZNF610 SMARCA4 GLIS1 ENSG00000238031 LINC01972 ENSG00000233987 RN7SL36P XXYLT1-AS2 XXYLT1 XXYLT1-AS1 ENSG00000271662 GC03P195215 LOC105374296
GH03H195207 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +115.5 115462 5 HDGF PKNOX1 TFAP4 TBL1XR1 MAX ZMYM3 EBF1 BATF RELA ZNF316 XXYLT1 XXYLT1-AS2 RN7SL36P XXYLT1-AS1 GC03P195215 LOC105374296
GH03H195028 1.5 FANTOM5 Ensembl ENCODE 11.5 -62.6 -62637 6 PKNOX1 FOXA2 ATF1 ZBTB7B YY1 ATF7 FOS DEK SP5 REST XXYLT1-AS1 XXYLT1 PIR39689 LOC105374295
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around XXYLT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for XXYLT1-AS1 Gene

Chromosome:
3
Start:
195,094,588 bp from pter
End:
195,096,057 bp from pter
Size:
1,470 bases
Orientation:
Plus strand

Genomic View for XXYLT1-AS1 Gene

Genes around XXYLT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
XXYLT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for XXYLT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XXYLT1-AS1 Gene

Proteins for XXYLT1-AS1 Gene

Post-translational modifications for XXYLT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for XXYLT1-AS1 Gene

Domains & Families for XXYLT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for XXYLT1-AS1 Gene

Function for XXYLT1-AS1 Gene

Phenotypes From GWAS Catalog for XXYLT1-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for XXYLT1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for XXYLT1-AS1 Gene

Localization for XXYLT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for XXYLT1-AS1 Gene

Pathways & Interactions for XXYLT1-AS1 Gene

SuperPathways for XXYLT1-AS1 Gene

No Data Available

Interacting Proteins for XXYLT1-AS1 Gene

Gene Ontology (GO) - Biological Process for XXYLT1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for XXYLT1-AS1 Gene

Drugs & Compounds for XXYLT1-AS1 Gene

No Compound Related Data Available

Transcripts for XXYLT1-AS1 Gene

mRNA/cDNA for XXYLT1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for XXYLT1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for XXYLT1-AS1 Gene

No ASD Table

Relevant External Links for XXYLT1-AS1 Gene

GeneLoc Exon Structure for
XXYLT1-AS1
ECgene alternative splicing isoforms for
XXYLT1-AS1

Expression for XXYLT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for XXYLT1-AS1 Gene

genes like me logo Genes that share expression patterns with XXYLT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for XXYLT1-AS1 Gene

Orthologs for XXYLT1-AS1 Gene

Evolution for XXYLT1-AS1 Gene

ENSEMBL:
Gene Tree for XXYLT1-AS1 (if available)
TreeFam:
Gene Tree for XXYLT1-AS1 (if available)

No data available for Orthologs for XXYLT1-AS1 Gene

Paralogs for XXYLT1-AS1 Gene

No data available for Paralogs for XXYLT1-AS1 Gene

Variants for XXYLT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for XXYLT1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000473409 -- 195,095,076(+) CTGGT(C/T)TGCAG intron-variant
rs1000823477 -- 195,096,163(+) TTGAC(C/T)TTAAG intron-variant, downstream-variant-500B
rs1001613221 -- 195,095,373(+) TGCAC(A/G)GCAGG intron-variant, nc-transcript-variant
rs1002207223 -- 195,095,179(+) CATTA(C/T)ATCTC intron-variant
rs1002402272 -- 195,096,437(+) CCCAT(C/G)TGCAC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for XXYLT1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3599226 CNV gain 21293372
nsv1001492 CNV gain 25217958
nsv1009796 CNV gain 25217958
nsv950297 CNV deletion 24416366

Relevant External Links for XXYLT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
XXYLT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for XXYLT1-AS1 Gene

Disorders for XXYLT1-AS1 Gene

Relevant External Links for XXYLT1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
XXYLT1-AS1

No disorders were found for XXYLT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for XXYLT1-AS1 Gene

Publications for XXYLT1-AS1 Gene

No publications were found for XXYLT1-AS1 Gene.

Products for XXYLT1-AS1 Gene

Sources for XXYLT1-AS1 Gene

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