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Aliases for XXYLT1-AS1 Gene

Subcategory (RNA class) for XXYLT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for XXYLT1-AS1 Gene

  • XXYLT1 Antisense RNA 1 2 3 5
  • XXYLT1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for XXYLT1-AS1 Gene

Previous GeneCards Identifiers for XXYLT1-AS1 Gene

  • GC03P194816

Summaries for XXYLT1-AS1 Gene

GeneCards Summary for XXYLT1-AS1 Gene

XXYLT1-AS1 (XXYLT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XXYLT1-AS1 Gene

Genomics for XXYLT1-AS1 Gene

Regulatory Elements for XXYLT1-AS1 Gene

Enhancers for XXYLT1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F195028 1.6 FANTOM5 Ensembl ENCODE 11.5 -62.6 -62637 6.2 PKNOX1 ATF1 ARID4B DMAP1 ZNF48 YY1 FOS DEK SP5 MIER2 XXYLT1-AS1 XXYLT1 PIR39689 LOC105374295
GH03F195129 1.5 FANTOM5 Ensembl ENCODE 11.3 +35.9 35940 3.6 TBP PKNOX1 TBL1XR1 WRNIP1 SIN3A YBX1 BMI1 RAD21 ZBTB40 YY1 XXYLT1 XXYLT1-AS1 FAM43A LSG1 PPP1R2 MIR3137
GH03F195203 1.5 FANTOM5 Ensembl ENCODE 10.7 +110.1 110148 2.7 HDGF HDAC1 PKNOX1 CBX3 ATF1 INSM2 FEZF1 EGR2 ZBTB2 CEBPB ENSG00000238031 LINC01972 ENSG00000233987 MIR570 RN7SL36P XXYLT1-AS2 LSG1 XXYLT1 XXYLT1-AS1 ENSG00000271662
GH03F195185 1.5 FANTOM5 Ensembl ENCODE 10.7 +92.5 92499 3.9 HDGF TBP PKNOX1 RAD21 RARA ZNF366 RCOR1 ETV6 FOS EGR2 RNU6-25P XXYLT1 XXYLT1-AS2 RN7SL36P XXYLT1-AS1 GC03P195215 LOC105374296
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around XXYLT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for XXYLT1-AS1 Gene

195,094,588 bp from pter
195,096,057 bp from pter
1,470 bases
Plus strand

Genomic View for XXYLT1-AS1 Gene

Genes around XXYLT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
XXYLT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for XXYLT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XXYLT1-AS1 Gene

Proteins for XXYLT1-AS1 Gene

Post-translational modifications for XXYLT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for XXYLT1-AS1 Gene

Domains & Families for XXYLT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for XXYLT1-AS1 Gene

Function for XXYLT1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for XXYLT1-AS1 Gene

Localization for XXYLT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for XXYLT1-AS1 Gene

Pathways & Interactions for XXYLT1-AS1 Gene

SuperPathways for XXYLT1-AS1 Gene

No Data Available

Interacting Proteins for XXYLT1-AS1 Gene

Gene Ontology (GO) - Biological Process for XXYLT1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for XXYLT1-AS1 Gene

Transcripts for XXYLT1-AS1 Gene

mRNA/cDNA for XXYLT1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for XXYLT1-AS1 Gene

No ASD Table

Relevant External Links for XXYLT1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for XXYLT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for XXYLT1-AS1 Gene

genes like me logo Genes that share expression patterns with XXYLT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for XXYLT1-AS1 Gene

Orthologs for XXYLT1-AS1 Gene

Evolution for XXYLT1-AS1 Gene

Gene Tree for XXYLT1-AS1 (if available)
Gene Tree for XXYLT1-AS1 (if available)

No data available for Orthologs for XXYLT1-AS1 Gene

Paralogs for XXYLT1-AS1 Gene

No data available for Paralogs for XXYLT1-AS1 Gene

Variants for XXYLT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for XXYLT1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111578885 -- 195,093,621(+) CACAT(A/G)TATAC intron-variant, upstream-variant-2KB
rs111821533 -- 195,095,004(+) TGTCC(C/G)GGATC intron-variant
rs111823622 -- 195,094,409(+) CCACA(A/C/T)GCATG intron-variant, upstream-variant-2KB
rs111875804 -- 195,096,529(+) ACGCA(C/T)ACATT intron-variant, downstream-variant-500B
rs112313829 -- 195,095,634(+) AGCAA(C/T)AGCGC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for XXYLT1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3599226 CNV gain 21293372
nsv1001492 CNV gain 25217958
nsv1009796 CNV gain 25217958
nsv950297 CNV deletion 24416366

Relevant External Links for XXYLT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for XXYLT1-AS1 Gene

Disorders for XXYLT1-AS1 Gene

Relevant External Links for XXYLT1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for XXYLT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for XXYLT1-AS1 Gene

Publications for XXYLT1-AS1 Gene

No publications were found for XXYLT1-AS1 Gene.

Products for XXYLT1-AS1 Gene

Sources for XXYLT1-AS1 Gene

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