Free for academic non-profit institutions. Other users need a Commercial license

Aliases for XRRA1 Gene

Aliases for XRRA1 Gene

  • X-Ray Radiation Resistance Associated 1 2 3

External Ids for XRRA1 Gene

Summaries for XRRA1 Gene

GeneCards Summary for XRRA1 Gene

XRRA1 (X-Ray Radiation Resistance Associated 1) is a Protein Coding gene.

UniProtKB/Swiss-Prot for XRRA1 Gene

  • May be involved in the response of cells to X-ray radiation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XRRA1 Gene

Genomics for XRRA1 Gene

Genomic Location for XRRA1 Gene

Start:
74,807,739 bp from pter
End:
74,949,200 bp from pter
Size:
141,462 bases
Orientation:
Minus strand

Genomic View for XRRA1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for XRRA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XRRA1 Gene

Regulatory Elements for XRRA1 Gene

Proteins for XRRA1 Gene

  • Protein details for XRRA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P2D8-XRRA1_HUMAN
    Recommended name:
    X-ray radiation resistance-associated protein 1
    Protein Accession:
    Q6P2D8
    Secondary Accessions:
    • B5MD90
    • J3KNJ1
    • Q7RTT7
    • Q7Z463
    • Q7Z4U0

    Protein attributes for XRRA1 Gene

    Size:
    792 amino acids
    Molecular mass:
    89864 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAO23657.1; Type=Frameshift; Positions=327; Evidence={ECO:0000305}; Sequence=AAP97315.1; Type=Frameshift; Positions=327; Evidence={ECO:0000305};

    Alternative splice isoforms for XRRA1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for XRRA1 Gene

Proteomics data for XRRA1 Gene at MOPED

Post-translational modifications for XRRA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for XRRA1 Gene

Domains for XRRA1 Gene

Protein Domains for XRRA1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for XRRA1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6P2D8

UniProtKB/Swiss-Prot:

XRRA1_HUMAN
Similarity:
  • Contains 6 LRR (leucine-rich) repeats.:
    • Q6P2D8
genes like me logo Genes that share domains with XRRA1: view

No data available for Gene Families for XRRA1 Gene

Function for XRRA1 Gene

Molecular function for XRRA1 Gene

UniProtKB/Swiss-Prot Function: May be involved in the response of cells to X-ray radiation.
UniProtKB/Swiss-Prot Induction: By X-ray irradiation immediately after exposure and is then down-regulated two-fold in an X-ray radiation-resistant cell clone. Responds differently to X-ray radiation in clones of varying radiation responses.

Gene Ontology (GO) - Molecular Function for XRRA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with XRRA1: view

miRNA for XRRA1 Gene

miRTarBase miRNAs that target XRRA1

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for XRRA1 Gene

Localization for XRRA1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for XRRA1 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for XRRA1 Gene COMPARTMENTS Subcellular localization image for XRRA1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for XRRA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 12908878
GO:0005737 cytoplasm IDA 12908878
genes like me logo Genes that share ontologies with XRRA1: view

Pathways for XRRA1 Gene

SuperPathways for XRRA1 Gene

No Data Available

Interacting Proteins for XRRA1 Gene

Gene Ontology (GO) - Biological Process for XRRA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010165 response to X-ray IDA 12908878
genes like me logo Genes that share ontologies with XRRA1: view

No data available for Pathways by source for XRRA1 Gene

Transcripts for XRRA1 Gene

Unigene Clusters for XRRA1 Gene

X-ray radiation resistance associated 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for XRRA1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19a · 19b
SP1: - - - - - - - -
SP2: - -
SP3: - - -
SP4: - - - -
SP5:
SP6: -

Relevant External Links for XRRA1 Gene

GeneLoc Exon Structure for
XRRA1
ECgene alternative splicing isoforms for
XRRA1

Expression for XRRA1 Gene

mRNA expression in normal human tissues for XRRA1 Gene

mRNA differential expression in normal tissues according to GTEx for XRRA1 Gene

This gene is overexpressed in Testis (6.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for XRRA1 Gene

SOURCE GeneReport for Unigene cluster for XRRA1 Gene Hs.370145

mRNA Expression by UniProt/SwissProt for XRRA1 Gene

Q6P2D8-XRRA1_HUMAN
Tissue specificity: Expressed predominantly in testis followed by prostate and ovary. Low levels found in other tissues including peripheral blood leukocytes, spleen, thymus, small intestine and colon. Also expressed in neuroblastoma, glioma, breast, lung, leukemia, renal, ovarian, prostate and colorectal cancer cell lines.
genes like me logo Genes that share expressions with XRRA1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for XRRA1 Gene

Orthologs for XRRA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for XRRA1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia XRRA1 35
  • 99.28 (n)
  • 98.74 (a)
XRRA1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia XRRA1 36
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia XRRA1 35
  • 82.71 (n)
  • 75.4 (a)
XRRA1 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Xrra1 35
  • 80.22 (n)
  • 74.32 (a)
Xrra1 16
Xrra1 36
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia XRRA1 36
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia XRRA1 36
  • 30 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Xrra1 35
  • 79.64 (n)
  • 73.58 (a)
chicken
(Gallus gallus)
Aves LOC769715 35
  • 54.09 (n)
  • 44.7 (a)
XRRA1 36
  • 40 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia XRRA1 36
  • 38 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100493426 35
  • 54.18 (n)
  • 45.82 (a)
zebrafish
(Danio rerio)
Actinopterygii xrra1 35
  • 48.84 (n)
  • 39.1 (a)
xrra1 36
  • 33 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 41 (a)
OneToOne
Species with no ortholog for XRRA1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for XRRA1 Gene

ENSEMBL:
Gene Tree for XRRA1 (if available)
TreeFam:
Gene Tree for XRRA1 (if available)

Paralogs for XRRA1 Gene

Selected SIMAP similar genes for XRRA1 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with XRRA1: view

No data available for Paralogs for XRRA1 Gene

Variants for XRRA1 Gene

Sequence variations from dbSNP and Humsavar for XRRA1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs473080 -- 74,870,566(-) aaaat(G/T)gcaat intron-variant
rs473256 -- 74,920,657(+) ACTAG(C/G)TTTGC intron-variant
rs478280 -- 74,902,432(-) tttcc(C/T)ttctt intron-variant
rs480840 -- 74,914,952(+) ctacc(C/T)cttca intron-variant
rs491826 -- 74,873,739(-) cttga(C/T)gttag intron-variant

Structural Variations from Database of Genomic Variants (DGV) for XRRA1 Gene

Variant ID Type Subtype PubMed ID
dgv397e1 CNV Complex 17122850
dgv1223n71 CNV Gain 21882294
nsv8840 CNV Loss 18304495
nsv832210 CNV Gain+Loss 17160897

Relevant External Links for XRRA1 Gene

HapMap Linkage Disequilibrium report
XRRA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for XRRA1 Gene

Disorders for XRRA1 Gene

No disorders were found for XRRA1 Gene.

No data available for UniProtKB/Swiss-Prot for XRRA1 Gene

Publications for XRRA1 Gene

  1. Molecular cloning, genomic characterization and over-expression of a novel gene, XRRA1, identified from human colorectal cancer cell HCT116Clone2_XRR and macaque testis. (PMID: 12908878) Mesak F.M. … Ng C.E. (BMC Genomics 2003) 2 3 4
  2. Diesel exhaust particles disturb gene expression in mouse testis. (PMID: 17295261) Mori T. … Kashiwagura T. (Environ. Toxicol. 2007) 2 3
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4

Products for XRRA1 Gene

Sources for XRRA1 Gene

Back to Top

Content