Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

XRCC3 Gene

protein-coding   GIFtS: 60
GCID: GC14M104163

X-ray repair complementing defective repair in Chinese hamster...

 Explore 86 diseases affiliated with
XRCC3 via our new
 Human Malady Compendium 
Biological research products
for XRCC3
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
X-Ray Repair Complementing Defective Repair In Chinese Hamster Cells 31 2
X-Ray Repair Cross-Complementing Protein 32 3
CMM62 5
DNA Repair Protein XRCC32

External Ids:    HGNC: 128301   Entrez Gene: 75172   Ensembl: ENSG000001262157   OMIM: 6006755   UniProtKB: O435423   

Export aliases for XRCC3 gene to outside databases

Previous GC identifers: GC14M101555 GC14M097979 GC14M102153 GC14M103233 GC14M084342


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for XRCC3:
This gene encodes a member of the RecA/Rad51-related protein family that participates in homologous recombination to
maintain chromosome stability and repair DNA damage. This gene functionally complements Chinese hamster irs1SF, a
repair-deficient mutant that exhibits hypersensitivity to a number of different DNA-damaging agents and is
chromosomally unstable. A rare microsatellite polymorphism in this gene is associated with cancer in patients of
varying radiosensitivity. Alternatively spliced transcript variants encoding the same protein have been identified.
(provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: XRCC3_HUMAN, O43542
Function: Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair
chromosomal fragmentation, translocations and deletions. Plays a role in regulating mitochondrial DNA copy number
under conditions of oxidative stress in the presence of RAD51 and RAD51C

Gene Wiki entry for XRCC3


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NC_018925.1  NT_026437.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the XRCC3 gene promoter:
         CHOP-10   GR   PPAR-gamma1   p53   GR-beta   PPAR-gamma2   GR-alpha   C/EBPalpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidXRCC3 promoter sequence
   Search SABiosciences Chromatin IP Primers for XRCC3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat XRCC3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q32.3   Ensembl cytogenetic band:  14q32.33   HGNC cytogenetic band: 14q32.3

XRCC3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
XRCC3 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M104163:  view genomic region     (about GC identifiers)

Start:
104,163,946 bp from pter      End:
104,181,841 bp from pter
Size:
17,896 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: XRCC3_HUMAN, O43542 (See protein sequence)
Recommended Name: DNA repair protein XRCC3  
Size: 346 amino acids; 37850 Da
Subunit: Interacts with RAD51C and RAD51. Part of a complex consisting of RAD51B, RAD51C, RAD51D, XRCC2 and XRCC3.
Forms a complex with FANCD2, BRCA2 and phosphorylated FANCG. Interacts with SWSAP1 and ZSWIM7; involved in homologous
recombination repair
Subcellular location: Nucleus. Cytoplasm. Cytoplasm, perinuclear region. Mitochondrion. Note=Accumulates in discrete
nuclear foci prior to DNA damage, and these foci persist throughout the time course of DNA repair
Secondary accessions: O43568 Q9BU18

Explore the universe of human proteins at neXtProt for XRCC3: NX_O43542

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_O43542

  • XRCC3 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (3 alternative transcripts): 
    NP_001093588.1  NP_001093589.1  NP_005423.1  

    ENSEMBL proteins: 
     ENSP00000451362   ENSP00000343392   ENSP00000451974   ENSP00000452598   ENSP00000451361  
     ENSP00000451118   ENSP00000451252   ENSP00000451173   ENSP00000452389   ENSP00000450780  
     ENSP00000450738   ENSP00000412990  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate (see all 5): XRCC3
    OriGene Custom Protein Services for XRCC3 
    GenScript Custom Purified and Recombinant Proteins Services for XRCC3
    Novus Biologicals XRCC3 Proteins
    Novus Biologicals XRCC3 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for XRCC3

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA16215984
    GO:0005737cytoplasm IDA16215984
    GO:0005739mitochondrion IDA--
    GO:0048471perinuclear region of cytoplasm IDA16215984


    XRCC3 for ontologies           About GeneDecksing



    XRCC3 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    OriGene Antibodies (see all 3): XRCC3
    OriGene Custom Antibody Services for XRCC3 
    GenScript Custom Superior Antibodies Services for XRCC3
    Novus Biologicals XRCC3 Antibodies
    Abcam antibodies for XRCC3 
    Uscn Antibodies for XRCC3
    ThermoFisher Antibodies for XRCC3

    Assay Products for XRCC3: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for XRCC3
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for XRCC3


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    XRCC3 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR020588 DNA_recomb_RecA/RadB_ATP-bd
     IPR016467 DNA_recomb/repair_RecA-like
     IPR013632 DNA_recomb/repair_Rad51_C

    Graphical View of Domain Structure for InterPro Entry O43542

    ProtoNet protein and cluster: O43542

    UniProtKB/Swiss-Prot: XRCC3_HUMAN, O43542
    Similarity: Belongs to the RecA family. RAD51 subfamily


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: XRCC3_HUMAN, O43542
    Function: Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair
    chromosomal fragmentation, translocations and deletions. Plays a role in regulating mitochondrial DNA copy number
    under conditions of oxidative stress in the presence of RAD51 and RAD51C
    Induction: Stress-induced increase in the mitochondrial levels is seen

         Genatlas biochemistry entry for XRCC3:
    repair X-ray defect,complementing defect in CHO cells,3,involved in recombinational repair,interacting with RAD51 for
    maintenance of genomic integrity

    miRNA
    Products:
        
    OriGene 3'-UTR Clone (see all 3): XRCC3
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat XRCC3
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate XRCC3
    SwitchGear 3'UTR luciferase reporter plasmidXRCC3 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for XRCC3 (see all 4)
    OriGene shRNA RFP: XRCC3
    OriGene siRNA: XRCC3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat XRCC3

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for XRCC3

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for XRCC3 (see all 5)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for XRCC3 (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): XRCC3 (NM_001100118)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for XRCC3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat XRCC3 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for XRCC3
    Search LifeMap BioReagents cell lines for XRCC3

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for XRCC3

    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0005515protein binding IPI--
    GO:0005524ATP binding IEA--
    GO:0008094DNA-dependent ATPase activity IEA--


    XRCC3 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for XRCC3:
     Synthetic lethal with cisplati  Upregulation of Wnt/beta-caten 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Fluoropyrimidine Activity
    Fluoropyrimidine Activity1.00
    Fluoropyrimidine Pathway, Pharmacodynamics0.30
    2Integrated Breast Cancer Pathway
    Integrated Breast Cancer Pathway1.00
    3Homologous recombination
    Homologous recombination0.38

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    2 BioSystems Pathways for XRCC3 
        Integrated Breast Cancer Pathway
    Fluoropyrimidine Activity

    1 PharmGKB Pathway for XRCC3
        Fluoropyrimidine Pathway, Pharmacodynamics

    1         Kegg Pathway  (Kegg details for XRCC3):
        Homologous recombination


    XRCC3 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for XRCC3

    STRING Interaction Network Preview (showing 5 interactants - click image to see 15)

    5/15 Interacting proteins for XRCC3 (O435421, 3 ENSP000003433924) via UniProtKB, MINT, STRING, and/or I2D (see all 15)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    FANCGO152873, ENSP000003679104I2D: score=3 STRING: ENSP00000367910
    RAD51CO435023, ENSP000003367014I2D: score=3 STRING: ENSP00000336701
    BRCA2P515873, ENSP000003694974I2D: score=1 STRING: ENSP00000369497
    RAD51Q066093, ENSP000002678684I2D: score=1 STRING: ENSP00000267868
    ZNHIT3Q156493, ENSP000002254104I2D: score=1 STRING: ENSP00000225410
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006259DNA metabolic process ----
    GO:0006281DNA repair IGI10422536
    GO:0006310DNA recombination IEA--
    GO:0006974response to DNA damage stimulus TAS7603995
    GO:0010033response to organic substance IEA--


    XRCC3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    XRCC3 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for XRCC3
    10/11 Novoseek chemical compound relationships for XRCC3 gene (see all 11)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    pcb 153 61 9 19069643 (2), 18948301 (1)
    mitomycin c 42.3 3 7603995 (1), 17141189 (1)
    cisplatin 33.2 8 15843498 (2), 16622263 (1), 17141189 (1)
    folate 29 7 19177501 (2), 16997330 (2), 19360465 (1), 15066914 (1) (see all 5)
    benzene 20.3 8 18095557 (3), 17535647 (2), 17605237 (2), 16728435 (1)
    camptothecin 16.3 2 12584174 (2)
    melphalan 13.1 7 11584063 (4), 15843498 (1)
    n acetylcysteine 11.7 1 19069643 (1)
    p003 1.68 2 12007561 (1), 12865926 (1)
    methionine 0 2 17701750 (1), 12223443 (1)

    Search CenterWatch for drugs/clinical trials and news about XRCC3 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for XRCC3 gene (3 alternative transcripts): 
    NM_001100118.1  NM_001100119.1  NM_005432.3  

    Unigene Clusters for XRCC3:

    X-ray repair complementing defective repair in Chinese hamster cells 3
    Hs.592325  [show with all ESTs], Hs.733412  [show with all ESTs]
    Unigene Representative Sequences: BX368160, AK124498
    18/19 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 19):
    ENST00000554913(uc001yoa.4) ENST00000352127(uc001ynz.4) ENST00000554811
    ENST00000553264 ENST00000555055(uc001ynx.4 uc001yny.4) ENST00000554974
    ENST00000554774 ENST00000555451 ENST00000555832 ENST00000553807 ENST00000557439
    ENST00000553361 ENST00000556980 ENST00000555964 ENST00000555231 ENST00000556682
    ENST00000553332 ENST00000554170

    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 3): XRCC3
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat XRCC3
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate XRCC3
    SwitchGear 3'UTR luciferase reporter plasmidXRCC3 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for XRCC3 (see all 4)
    OriGene shRNA RFP: XRCC3
    OriGene siRNA: XRCC3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat XRCC3
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for XRCC3 (see all 5)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for XRCC3 (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): XRCC3 (NM_001100118)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for XRCC3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat XRCC3 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for XRCC3
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat XRCC3
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat XRCC3
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat XRCC3

    Additional cDNA sequence: 

    AF035586.1 AK022829.1 AK023646.1 AK124498.1 AK296465.1 BC001036.1 BC002949.1 BC011725.2 
    BT007417.1 BX161398.1 

    19 DOTS entries:

    DT.99936700  DT.102838411  DT.100773069  DT.408842  DT.120790634  DT.75146282  DT.92051759  DT.100797026 
    DT.120790785  DT.100797028  DT.92063298  DT.432421  DT.120790878  DT.91974123  DT.95372736  DT.100693953 
    DT.100700104  DT.100762829  DT.95372738 

    24/151 AceView cDNA sequences (see all 151):

    BE396817 BM915097 BU182143 BX385078 AU138697 BM682035 AU124974 BM127755 
    AK022829 BM557723 AK126706 BM128018 CR603680 BX375448 BC073820 BC011725 
    BC002949 BQ213513 CR610241 CB048579 BC001036 AU118580 CB150648 AL526291 

    GeneLoc Exon Structure

    5/13 Alternative Splicing Database (ASD) splice patterns (SP) for XRCC3 (see all 13)    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b · 6c · 6d · 6e ^ 7a · 7b · 7c ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13
    SP1:              -     -     -     -     -                       -                       -                       -     -     -                 -         
    SP2:                                -     -                       -                       -                                                               
    SP3:              -     -           -     -                       -                       -                                                               
    SP4:              -     -     -     -     -                       -                       -                                                               
    SP5:                                -     -                       -                       -                       -     -     -                           


    ECgene alternative splicing isoforms for XRCC3

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    XRCC3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: ACTGTGCAGC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See XRCC3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for XRCC3

    SOURCE GeneReport for Unigene clusters: Hs.592325 Hs.733412
        SABiosciences Expression via Pathway-Focused PCR Arrays including XRCC3: 
              DNA Damage Signaling Pathway in human mouse rat
              DNA Repair in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for XRCC3
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat XRCC3
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat XRCC3
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat XRCC3
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for XRCC3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for XRCC3 gene from 6/21 species (see all 21)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves XRCC31 X-ray repair complementing defective repair in Chinese more 62.34(n)
    62.24(a)
      423485  NM_001006489.1  NP_001006489.1 
    lizard
    (Anolis carolinensis)
    Reptilia XRCC36
    --
    56(a)
    1 ↔ 1
    1(6025876-6038869)
    zebrafish
    (Danio rerio)
    Actinopterygii xrcc31 X-ray repair complementing defective repair in Chinese more 57.97(n)
    53.33(a)
      541414  NM_001013541.1  NP_001013559.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta spn-B1 spindle B 47.06(n)
    39.92(a)
      41746  NM_057392.4  NP_476740.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons XRCC31 DNA repair protein XRCC3-like protein 42.4(n)
    36.4(a)
      835850  NM_125127.2  NP_200554.1 
    rice
    (Oryza sativa)
    Liliopsida Os02g05621001 hypothetical protein 49.65(n)
    39.33(a)
      4329686  NM_001053685.1  NP_001047150.1 


    ENSEMBL Gene Tree for XRCC3 (if available)
    TreeFam Gene Tree for XRCC3 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/308 NCBI SNPs in XRCC3 are shown (see all 308    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs8615391,2
    C,F,H,other85419791(-) GGCCAC/TGCTGC 6 T M mis134Minor allele frequency- T:0.28NS MN EU NA EA WA CSA 7595
    rs289030801,2
    C--84343772(-) CACACG/AGGCCG 6 /R /G mis1 ese32Minor allele frequency- A:0.01EU NA 194
    rs798747911,2
    --84344044(+) CGCAGC/AGTGGC 6 /T syn11Minor allele frequency- A:0.00NA 3698
    rs32120921,2
    C,F,H,--84346937(-) CAGCTC/TAGACA 3 -- int19Minor allele frequency- T:0.03NS EA NA 916
    rs8615341,2
    C,F,H,--84346994(-) AAGACG/AGCCCT 3 -- int119Minor allele frequency- A:0.24NS NA EA WA CSA 1068
    rs32120891,2
    C,F,H,--84347310(-) GCTGCG/AACACC 3 -- int111Minor allele frequency- A:0.05NS EA NA WA 1392
    rs32120871,2
    C,F,H,--84347404(-) ATGGGC/TCTAGG 3 -- int16Minor allele frequency- T:0.01NS EA WA 716
    rs784682871,2
    --84347462(+) TGTAGC/GAGGAC 3 -- int11Minor allele frequency- G:0.01WA 118
    rs802244071,2
    F,--84347650(+) TCCTCG/AGGCGT 3 -- int11Minor allele frequency- A:0.07WA 118
    rs289030791,2
    C--84347872(-) ACTGAC/TGTTCC 6 D syn1 ese32Minor allele frequency- T:0.00EU NA 3590

    HapMap Linkage Disequilibrium report for XRCC3 (104163946 - 104181841 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for XRCC3
         1 CNV: 3949
         1 Indel: 33277
    Human Gene Mutation Database (HGMD): XRCC3

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing XRCC3
    DNA2.0 Custom Variant and Variant Library Synthesis for XRCC3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    XRCC3 for disorders           About GeneDecksing

    OMIM gene information: 600675    OMIM disorders: --

    UniProtKB/Swiss-Prot: XRCC3_HUMAN, O43542
  • Defects in XRCC3 are the cause of susceptibility to breast cancer (BC) [MIM:114480]. BC is a common malignancy
  • originating from breast epithelial tissue. Breast neoplasms can be distinguished by their histologic pattern. Invasive
    ductal carcinoma is by far the most common type. Breast cancer is etiologically and genetically heterogeneous.
    Important genetic factors have been indicated by familial occurrence and bilateral involvement. Mutations at more than
    one locus can be involved in different families or even in the same case
  • Defects in XRCC3 are the cause of susceptibility to cutaneous malignant melanoma type 6 (CMM6) [MIM:613972].
  • CMM6 is a malignant neoplasm of melanocytes, arising de novo or from a pre-existing benign nevus, which occurs most
    often in the skin but also may involve other sites

    20/86 diseases for XRCC3 (see all 86):    About MalaCards
    diffuse large b-cell lymphoma    xeroderma pigmentosum    b-cell lymphomas    acoustic neuroma
    mutagen sensitivity    non-hodgkin lymphoma    soft tissue sarcoma    spina bifida
    ataxia telangiectasia    orofacial cleft    squamous cell carcinoma    biliary tract cancer
    breast cancer susceptibility    urinary bladder cancer    cutaneous malignant melanoma    oral squamous cell carcinoma
    breast cancer    squamous cell carcinoma of the head and neck    neuroma    systemic lupus erythematosus

    4 diseases from the University of Copenhagen DISEASES database for XRCC3:
    Xeroderma pigmentosum     Breast cancer     Urinary bladder cancer     Lung cancer

    10/26 Novoseek disease relationships for XRCC3 gene (see all 26)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    xeroderma pigmentosum 53.3 4 16707649 (1), 18630471 (1), 19307510 (1), 17630853 (1)
    chromosomal aberrations 49.7 5 16997330 (2), 17159780 (1), 17923529 (1)
    cancer 48 23 16791138 (4), 9542526 (3), 16137195 (3), 16707649 (3) (see all 12)
    bladder cancer 42.1 14 19815090 (2), 16284380 (2), 12223443 (1), 19429237 (1) (see all 7)
    breast cancer 41.9 26 19426727 (4), 19886181 (3), 12565173 (2), 12023982 (2) (see all 14)
    cancer lung 41.1 12 17034901 (3), 12618330 (2), 17705814 (2), 12917199 (1) (see all 8)
    ataxia telangiectasia 31.1 1 16966185 (1)
    skin cancer 30.3 2 15126335 (1), 16791138 (1)
    genetic susceptibility 23.6 1 18543213 (1)
    adenocarcinoma 21.9 4 16571649 (1), 16540687 (1), 18336773 (1)

    Genetic Association Database (GAD): XRCC3
    Human Genome Epidemiology (HuGE) Navigator: XRCC3 (267 documents)

    Export disorders for XRCC3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for XRCC3 gene, integrated from 9 sources (see all 375):
    (articles sorted by number of sources associating them with XRCC3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Variants in DNA double-strand break repair genes and breast cancer susceptibility. (PubMed id 12023982)1, 2, 4, 9 Kuschel B....Dunning A. (2002)
    2. A variant within the DNA repair gene XRCC3 is associated with the development of melanoma skin cancer. (PubMed id 11059748)1, 2, 4, 9 Winsey S.L.... Welsh K.I. (2000)
    3. XRCC3 genetic polymorphism, smoking, and lung carcinoma risk in minority populations. (PubMed id 14534887)1, 4, 9 Wang Y....Wu X. (2003)
    4. Microsatellite polymorphisms in DNA repair genes XRCC1, XRCC3 and XRCC5 in patients with gynecological tumors: association with late clinical radiosensitivity and cancer incidence. (PubMed id 16137195)1, 4, 9 De Ruyck K....Thierens H. (2005)
    5. Are genetic polymorphisms in OGG1, XRCC1 and XRCC3 genes predictive for the DNA strand break repair phenotype and genotoxicity in workers exposed to low dose ionising radiations? (PubMed id 15491645)1, 4, 9 Aka P....Kirsch-Volders M. (2004)
    6. XRCC2 and XRCC3, new human Rad51-family members, promote chromosome stability and protect against DNA cross-links and other damages. (PubMed id 9660962)1, 2, 9 Liu N....Thompson L.H. (1998)
    7. Rare microsatellite polymorphisms in the DNA repair genes XRCC1, XRCC3 and XRCC5 associated with cancer in patients of varying radiosensitivity. (PubMed id 9542526)1, 4, 9 Price E.A....Arrand J.E. (1997)
    8. Cellular localization of human Rad51C and regulation of ubiquitin-mediated proteolysis of Rad51. (PubMed id 16215984)1, 2, 9 Bennett B.T. and Knight K.L. (2005)
    9. An association of polymorphism of DNA repair genes XRCC1 and XRCC3 with colorectal cancer. (PubMed id 15354414)1, 4, 9 Krupa R. and Blasiak J. (2004)
    10. An assessment of a variant of the DNA repair gene XRCC3 as a possible nevus or melanoma susceptibility genotype. (PubMed id 15009726)1, 4, 9 Bertram C.G....Newton Bishop J.A. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 7517 HGNC: 12830 AceView: XRCC3 Ensembl:ENSG00000126215 euGenes: HUgn7517
    ECgene: XRCC3 Kegg: 7517 H-InvDB: XRCC3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for XRCC3 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for XRCC3 Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/xrcc3/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for XRCC3 gene:
    Search GeneIP for patents involving XRCC3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for XRCC3   OriGene shRNA RFP for XRCC3  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for XRCC3   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for XRCC3  
     OriGene Protein Over-expression Lysate for XRCC3   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for XRCC3   OriGene 3'-UTR Clone for XRCC3  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for XRCC3   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for XRCC3  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for XRCC3   OriGene Custom Protein Services for XRCC3  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat XRCC3
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing XRCC3
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat XRCC3
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat XRCC3
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat XRCC3
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat XRCC3
     GenScript Custom Purified and Recombinant Proteins Services for XRCC3 GenScript cDNA clones with any tag delivered in your preferred vector for XRCC3
     GenScript Custom Assay Services for XRCC3 GenScript Custom Superior Antibodies Services for XRCC3
     GenScript Custom overexpressing Cell Line Services for XRCC3 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in XRCC3 promoter
     Search Chromatin IP Primers for XRCC3
     RT2 qPCR Primer Assay in human, mouse, rat XRCC3
     GNC Network for XRCC3
     SABiosciences PCR Arrays including human, mouse, rat XRCC3
     Search Tocris compounds for XRCC3
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     XRCC3 antibodies
     XRCC3 proteins
     XRCC3 lysates
     Antibodies for XRCC3
     See all of Abcam's Antibodies, Kits and Proteins for XRCC3
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     XRCC3 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for XRCC3
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for XRCC3
     SwitchGear 3'UTR luciferase reporter plasmids for XRCC3
     SwitchGear Promoter luciferase reporter plasmids for XRCC3
     ThermoFisher Antibodies for XRCC3
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat XRCC3
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      XRCC3 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4