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Aliases & Descriptions for XRCC3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions DNA repair protein XRCC3 2 X-ray repair complementing defective repair in Chinese hamster cells 3 2 X-ray repair cross complementing protein 3 2 X-ray repair cross-complementing protein 3 3
Search outside databases for aliases for XRCC3 genePrevious GC identifers: GC14M101555 GC14M097979 GC14M102153
Summaries for XRCC3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for XRCC3 : This gene encodes a member of the RecA/Rad51-related protein family that participates in homologousrecombination to maintain chromosome stability and repair DNA damage. This gene functionallycomplements Chinese hamster irs1SF, a repair-deficient mutant that exhibits hypersensitivity to anumber of different DNA-damaging agents and is chromosomally unstable. A rare microsatellitepolymorphism in this gene is associated with cancer in patients of varying radiosensitivity.Alternatively spliced transcript variants encoding the same protein have been identified.[provided by RefSeq] UniProtKB/Swiss-Prot: XRCC3_HUMAN, O43542 Function : Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA,thought to repair chromosomal fragmentation, translocations and deletions
Gene Wiki entry for XRCC3
Genomic Location for XRCC3
(According to
GeneLoc and/or
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and/or miRBase ,
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the XRCC3 gene Entrez Gene cytogenetic band: 14q32.3 Ensembl cytogenetic band: 14q32.33 HGNC cytogenetic band: 14q32.3 XRCC3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M103233:
(about GC identifiers )
Start:
103,233,707 bp from pter
End:
103,251,576 bp from pter
Size:
17,870 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000014.7 NT_026437.11 Proteins for XRCC3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
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Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
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Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
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R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: XRCC3_HUMAN, O43542 (See
protein sequence )Recommended Name: DNA repair protein XRCC3 Size : 346 amino acids; 37850 Da
Subunit : Interacts with RAD51C and RAD51. Part of a complex consisting of RAD51B, RAD51C, RAD51D,XRCC2 and XRCC3
Subcellular location : Nucleus (Probable)
Secondary accessions : O43568 Q9BU18
Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001093588.1 NP_001093589.1 NP_005423.1 ENSEMBL proteins: ENSP00000343392 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: XRCC3 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
About this table Antibodies for XRCC3: Assays for XRCC3:
Protein
Domains/ Families for XRCC3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O43542 ProtoNet protein and cluster: O43542
UniProtKB/Swiss-Prot: XRCC3_HUMAN, O43542 Similarity : Belongs to the recA family. RAD51 subfamily
Gene Function for XRCC3
(According to MGI Jun 06 2009, UniProtKB ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_005432 Applied Biosystems Silencer ® siRNAs for XRCC3 Sigma-Aldrich siRNA and siRNA Panels for XRCC3 Sigma-Aldrich shRNA Panels and shRNA for XRCC3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001100118                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001100118                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001100118  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001100119 UniProtKB/Swiss-Prot: XRCC3_HUMAN, O43542 Function : Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA,thought to repair chromosomal fragmentation, translocations and deletions
Genatlas biochemistry entry for XRCC3 :repair X-ray defect,complementing defect in CHO cells,3,involved in recombinationalrepair,interacting with RAD51 for maintenance of genomic integrity 4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for XRCC3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
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KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for XRCC3 5/35 Interacting proteins for XRCC3 (ENSP00000343392 3 ) via UniProtKB, MINT, and/or STRING (see all 35
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for XRCC3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Browse Tocris compounds for XRCC3 4 Novoseek chemical compound relationships for XRCC3 gene
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Transcripts for XRCC3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_005432 Sigma-Aldrich siRNA and siRNA Panels for XRCC3 Sigma-Aldrich shRNA Panels and shRNA for XRCC3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001100118 NM_001100119 NM_005432
REFSEQ mRNAs for XRCC3 gene (3 alternative transcripts): NM_001100118.1 NM_001100119.1 NM_005432.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001100118 NM_001100119 NM_005432
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001100118                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001100118                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001100118  
Additional cDNA sequence: AF035586.1 AK022829.1 AK023646.1 AK124498.1 AK296465.1 BC001036.1 BC002949.1 BC011725.2 BT007417.1 BX161398.1 CR603680.1 CR605233.1 CR610241.1 CR613005.1 CR622268.1
19 DOTS entries : DT.99936700 DT.102838411 DT.100773069 DT.408842 DT.120790634 DT.75146282 DT.92051759 DT.120790785 DT.100797026 DT.100797028 DT.92063298 DT.432421 DT.120790878 DT.91974123 DT.95372736 DT.100693953 DT.100700104 DT.100762829 DT.95372738
24/151 AceView cDNA sequences (see all 151
):BM127755 BX333561 AK022829 BX161398 BX325623 AU138697 AI983015 BC011725 BX339303 CR605233 AA595441 AF035586 CR613005 CR610241 BM905634 AA877848 AK126706 BM803244 BM976502 AU118580 BM797370 BX375448 CR622268 BE396817
highest scoring ESTs for XRCC3 :BF305177 BF306430 BG176868 BG421265 AK022829 AK023646 BC001036 BC011725 BX161398 BX339303
Unigene Cluster for XRCC3: X-ray repair complementing defective repair in Chinese hamster cells 3 Hs.719391 [show with all ESTs ] Unigene Representative Sequence: AK124498 GeneLoc Exon Structure 5/13 Alternative Splicing Database (ASD) splice patterns (SP) for XRCC3 (see all 13
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b · 6c · 6d · 6e ^ 7a · 7b · 7c ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 SP1 :     -   -   -   -   -         -         -         -   -   -       -     SP2 :           -   -         -         -                       SP3 :     -   -     -   -         -         -                       SP4 :     -   -   -   -   -         -         -                       SP5 :           -   -         -         -         -   -   -          
About this scheme ECgene alternative splicing isoforms for XRCC3 1 Ensembl transcript including schematic representation : ENST00000352127
Expression for XRCC3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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XRCC3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for XRCC3 1 / 2 / 3
3 probe-sets matching XRCC3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.719391 Expression variation in blood from EXPOLDB for XRCC3
Orthologs for XRCC3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
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and/or
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Orthologs for XRCC3 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for XRCC3 ENSEMBL Gene Tree for XRCC3 Paralogs for XRCC3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for XRCC3 gene DMC1 2 RAD51 2
SNPs/Variants for XRCC3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for XRCC3 (up to first 250kb)
Disorders & Mutations for XRCC3
(in which this Gene is Involved, According to
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OMIM: 600675 UniProtKB/Swiss-Prot: XRCC3_HUMAN, O43542
Met-241 is associated with the development of cutaneous malignant melanoma
10/25 Novoseek disease relationships for XRCC3 gene (see all 25
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
xeroderma pigmentosum
55.15
4
16707649 (1), 18630471 (1), 19307510 (1), 17630853 (1)
chromosomal aberrations
49.98
5
16997330 (2), 17159780 (1), 17923529 (1)
cancer
48.08
22
16791138 (4), 9542526 (3), 16137195 (3), 16707649 (3) (see all 11 )
cancer lung
43.72
12
17034901 (3), 12618330 (2), 17705814 (2), 12917199 (1) (see all 8 )
bladder cancer
38.22
7
16284380 (2), 12223443 (1), 16652373 (1), 19414392 (1) (see all 6 )
breast cancer
36.47
16
12565173 (2), 12023982 (2), 18188695 (2), 17701750 (1) (see all 11 )
ataxia telangiectasia
33.46
1
16966185 (1)
skin cancer
33.16
2
15126335 (1), 16791138 (1)
genetic susceptibility
26.38
1
18543213 (1)
carcinoma basal cell
21.94
2
15126335 (1), 18067130 (1)
About this table Human Gene Mutation Database : XRCC3 Genetic Association Database: XRCC3 Human Genome Epidemiology Navigator: XRCC3 (189 documents)
Medical News for XRCC3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for XRCC3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/273 PubMed articles for XRCC3 gene (see all 273
): A variant within the DNA repair gene XRCC3 is associated with the development of melanoma skin cancer. (PubMed id 11059748) 1, 3, 4, 6 Winsey S.L.... Welsh K.I. (2000) XRCC3 genetic polymorphism, smoking, and lung carcinoma risk in minority populations. (PubMed id 14534887) 1, 3, 6 Wang Y....Wu X. (2003) Microsatellite polymorphisms in DNA repair genes XRCC1, XRCC3 and XRCC5 in patients with gynecological tumors: association with late clinical radiosensitivity and cancer incidence. (PubMed id 16137195) 1, 3, 6 De Ruyck K....Thierens H. (2005) Are genetic polymorphisms in OGG1, XRCC1 and XRCC3 genes predictive for the DNA strand break repair phenotype and genotoxicity in workers exposed to low dose ionising radiations? (PubMed id 15491645) 1, 3, 6 Aka P....Kirsch-Volders M. (2004) XRCC2 and XRCC3, new human Rad51-family members, promote chromosome stability and protect against DNA cross-links and other damages. (PubMed id 9660962) 1, 3, 4 Liu N....Thompson L.H. (1998) Rare microsatellite polymorphisms in the DNA repair genes XRCC1, XRCC3 and XRCC5 associated with cancer in patients of varying radiosensitivity. (PubMed id 9542526) 1, 3, 6 Price E.A....Arrand J.E. (1997) An association of polymorphism of DNA repair genes XRCC1 and XRCC3 with colorectal cancer. (PubMed id 15354414) 1, 3, 6 Krupa R. and Blasiak J. (2004) An assessment of a variant of the DNA repair gene XRCC3 as a possible nevus or melanoma susceptibility genotype. (PubMed id 15009726) 1, 3, 6 Bertram C.G....Newton Bishop J.A. (2004) Variants in DNA double-strand break repair genes and breast cancer susceptibility. (PubMed id 12023982) 1, 3, 6 Kuschel B....Dunning A. (2002) DNA repair gene XRCC2 and XRCC3 polymorphisms and susceptibility to cancers of the upper aerodigestive tract. (PubMed id 15386379) 1, 3, 6 Benhamou S....Hirvonen A. (2004)
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Specialized Databases showing XRCC3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for XRCC3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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