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Aliases & Descriptions for XPO5
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| Exp5 3 | | FLJ14239 2 | | FLJ32057 2 | | FLJ45606 2 | | KIAA1291 1, 2, 3, 5 | | RANBP21 3 |
| | | Descriptions |
|---|
| Ran-binding protein 21 3 | | exportin 5 2 |
|
| | Search outside databases for aliases for XPO5 genePrevious GC identifers: GC06M043492 GC06M043536 |
Summaries for XPO5(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for XPO5: Exportin-5 belongs to a large family of karyopherins (see MIM 602738) that mediate the transport of proteins and other cargo between the nuclear and cytoplasmic compartments.[supplied by OMIM] UniProtKB/Swiss-Prot: XPO5_HUMAN, Q9HAV4Function: Mediates the nuclear export of micro-RNA precursors, which form short hairpins. Also mediates the nuclear export of synthetic short hairpin RNAs used for RNA interference, and adenovirus VA1 dsRNA. In some circumstances can also mediate the nuclear export of deacylated and aminoacylated tRNAs. Specifically recognizes dsRNAs that lack a 5'-overhang in a sequence-independent manner, have only a short 3'-overhang, and that have a double-stranded length of at least 15 base-pairs. Binding is dependent on Ran-GTPGene Wiki entry for XPO5 |
Genomic Location for XPO5
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the XPO5 gene 
Entrez Gene cytogenetic band: 6p21.1 Ensembl cytogenetic band: 6p21.1 HGNC cytogenetic band: 6p21.1XPO5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M043598:
(about GC identifiers)
Start:
|
43,598,050 bp from pter |
End:
|
43,654,163 bp from pter |
Size:
|
56,114 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007592.14
| Proteins for XPO5
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: XPO5_HUMAN, Q9HAV4 (See
protein sequence)Recommended Name: Exportin-5 Size: 1204 amino acids; 136311 Da
Subunit: Component of a nuclear export receptor complex composed of XPO5, Ran, dsRNA-binding proteins and dsRNA. Found in a nuclear export complex with XPO5, Ran, EEF1A1, and aminoacylated tRNA. Found in a nuclear export complex with XPO5, Ran, ILF3 and dsRNA. Found in a nuclear export complex with XPO5, Ran and pre-miRNA. Found in a nuclear export complex with XPO5, Ran, ILF3 and minihelix VA1 dsRNA. Found in a nuclear export complex with XPO5, RAN, ILF3, ZNF346 and dsRNA. Interacts with EEF1A1, ILF3, NUP153, NUP214 and ZNF346. Interacts with Ran and cargo proteins in a GTP-dependent manner
Subcellular location: Nucleus. Cytoplasm. Note=Shuttles between the nucleus and the cytoplasm
Sequence caution: Sequence=CAI42640.1; Type=Erroneous gene model prediction;
Secondary accessions: Q5JTE6 Q96G48 Q96HN3 Q9BWM6 Q9BZV5 Q9H9M4 Q9NT89 Q9NW39 Q9ULC9Alternative splicing: 2 isoforms: Q9HAV4-1 Q9HAV4-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_065801.1
ENSEMBL proteins: ENSP00000381816 ENSP00000361326 ENSP00000361332 ENSP00000361324 ENSP00000381779 ENSP00000265351
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for XPO5: Assays for XPO5: | Protein
Domains/ Families for XPO5(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9HAV4
ProtoNet protein and cluster: Q9HAV4 UniProtKB/Swiss-Prot: XPO5_HUMAN, Q9HAV4Similarity: Belongs to the exportin family | Gene Function for XPO5
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020750
Applied Biosystems Silencer® siRNAs for XPO5
Sigma-Aldrich siRNA for XPO5  Sigma-Aldrich shRNA for XPO5  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_020750                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020750                                  untagged cDNA clones in CMV expression vector (see all 2): NM_020750 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_020750
UniProtKB/Swiss-Prot: XPO5_HUMAN, Q9HAV4Function: Mediates the nuclear export of proteins bearing a double-stranded RNA binding domain (dsRBD) and double-stranded RNAs (cargos). XPO5 in the nucleus binds cooperatively to the RNA and to the GTPase Ran in its active GTP-bound form. Proteins containing dsRBDs can associate with this trimeric complex through the RNA. Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of a nuclear export complex into the cytoplasm, hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause disassembly of the complex and release of the cargo from the export receptor. XPO5 then returns to the nuclear compartment by diffusion through the nuclear pore complex, to mediate another round of transport. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Overexpression may in some circumstances enhance RNA-mediated gene silencing (RNAi)Function: Mediates the nuclear export of micro-RNA precursors, which form short hairpins. Also mediates the nuclear export of synthetic short hairpin RNAs used for RNA interference, and adenovirus VA1 dsRNA. In some circumstances can also mediate the nuclear export of deacylated and aminoacylated tRNAs. Specifically recognizes dsRNAs that lack a 5'-overhang in a sequence-independent manner, have only a short 3'-overhang, and that have a double-stranded length of at least 15 base-pairs. Binding is dependent on Ran-GTP3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for XPO5
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for XPO5 
5/18 Interacting proteins for XPO5 (Q9HAV41 ENSP000002653513) via UniProtKB, MINT, and/or STRING (see all 18
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006611 | protein export from nucleus |
IEA | -- | | GO:0015031 | protein transport |
IEA | -- | | GO:0031047 | gene silencing by RNA |
IEA | -- | About this table
|
Drugs & Compounds for XPO5(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for XPO5 1 Novoseek chemical compound relationship for XPO5 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| trna |
43.69 |
2 |
16963774 (1) |
About this table
|
Transcripts for XPO5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020750
Sigma-Aldrich siRNA for XPO5  Sigma-Aldrich shRNA for XPO5  Explore Sigma-Aldrich super-pooled esiRNAs 
REFSEQ mRNAs for XPO5 gene: NM_020750.2               OriGene GFP tagged cDNA clone in CMV expression vector: NM_020750                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020750                                  untagged cDNA clones in CMV expression vector (see all 2): NM_020750  Additional cDNA sequence: AB033117.2 AF271159.1 AF298880.1 AK001195.1 AK022718.1 AK023431.1 AK024301.1 AK025864.1 AK127513.1 AK291452.1 AL137467.1 AL834207.1 BC000129.1 BC008347.1 BC009969.2 BC062635.1 CR597693.1 24 DOTS entries: DT.101970772 DT.100811606 DT.117479 DT.100811608 DT.99995909 DT.99997262 DT.121405758 DT.91659446 DT.121405494 DT.101980818 DT.121405378 DT.100037823 DT.121405666 DT.100811605 DT.121405328 DT.40269817 DT.92447587 DT.92447592 DT.92447595 DT.100811609 DT.75131516 DT.75157158 DT.92447588 DT.92447594 24/327 AceView cDNA sequences (see all 327
):BM842068 BM709806 CA419664 BQ673134 CA442986 CR597693 BM558485 BM841722 BC000129 AA709255 BQ065867 BE900509 AU125578 BM799882 AF271159 AW137523 D25805 AU125748 BM829018 CD365777 BI858213 BQ227498 AB033117 NM_020750
highest scoring ESTs for XPO5:AA148837 AA404723 AL514614 BM473797 BM560745 BM799882 BM833885 BX383435 BX642946 CB989586 Unigene Cluster for XPO5: Exportin 5 Hs.203206 [show with all ESTs]Unigene Representative Sequence: NM_020750
GeneLoc Exon Structure
6 Ensembl transcripts including schematic representations: ENST00000398835
ENST00000372252
ENST00000372258
ENST00000372250
ENST00000398799
ENST00000265351
|
Expression for XPO5
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| XPO5 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for XPO5
1 / 2 / 3 9 probe-sets matching XPO5 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TCAGTAAAAA
SOURCE GeneReport for Unigene cluster: Hs.203206 UniProtKB/Swiss-Prot: XPO5_HUMAN, Q9HAV4Tissue specificity: Expressed in heart, brain, placenta, lung, skeletal muscle, kidney and pancreas |
Orthologs for XPO5
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for XPO5 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for XPO5
ENSEMBL Gene Tree for XPO5 | Paralogs for XPO5(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for XPO5(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for XPO5 (up to first 250kb)
|
Disorders & Mutations for XPO5
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 607845
Human Genome Epidemiology Navigator: XPO5 (2 documents)
|
Medical News for XPO5(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for XPO5 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/39 PubMed articles for XPO5 gene (see all 39
):- Exportin-5, a novel karyopherin, mediates nuclear export of double- stranded RNA binding proteins. (PubMed id 11777942)1, 2, 3, 4 Brownawell A.M. and Macara I.G. (2002)
- Exp5 exports eEF1A via tRNA from nuclei and synergizes with other transport pathways to confine translation to the cytoplasm. (PubMed id 12426392)1, 2, 3, 4 Bohnsack M.T....Gorlich D. (2002)
- Nucleocytoplasmic shuttling of JAZ, a new cargo protein for exportin- 5. (PubMed id 15254228)1, 3, 4 Chen T.... Macara I.G. (2004)
- Overexpression of exportin 5 enhances RNA interference mediated by short hairpin RNAs and microRNAs. (PubMed id 15613540)1, 3, 4 Yi R.... Cullen B.R. (2005)
- Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. (PubMed id 14681208)1, 3, 4 Yi R.... Cullen B.R. (2003)
- Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. (PubMed id 14730017)1, 3, 4 Bohnsack M.T.... Goerlich D. (2004)
- Minihelix-containing RNAs mediate exportin-5-dependent nuclear export of the double-stranded RNA-binding protein ILF3. (PubMed id 14570900)1, 3, 4 Gwizdek C....Dargemont C. (2004)
- Nuclear export of microRNA precursors. (PubMed id 14631048)1, 3, 4 Lund E.... Kutay U. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
|
Search for XPO5
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing XPO5
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing XPO5
(According to HUGE)
About This Section
| |
Specialized Databases showing XPO5(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for XPO5(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for XPO5:

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