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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

XKR9 Gene

protein-coding   GIFtS: 35
GCID: GC08P071581

XK, Kell Blood Group Complex Subunit-Related Family, Member...

(Previous names: X Kell blood group precursor-related family, member 9)
  Search for XKR9
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
XK, Kell Blood Group Complex Subunit-Related Family, Member 91 2
X Kell Blood Group Precursor-Related Family, Member 91 2
XRG92 3
XK-Related Protein 92

External Ids:    HGNC: 209371   Entrez Gene: 3896682   Ensembl: ENSG000002219477   UniProtKB: Q5GH703   

Export aliases for XKR9 gene to outside databases

Previous GC identifers: GC08P071757 GC08P067074


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for XKR9 Gene: 
XKR9 (XK, Kell blood group complex subunit-related family, member 9) is a protein-coding gene. An important paralog of this gene is XKR6.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NC_018919.2  NT_008183.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the XKR9 gene promoter:
         SRF   ISGF-3   SRF (504 AA)   POU6F1 (c2)   CUTL1   Evi-1   AREB6   MEF-2A   FAC1   aMEF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidXKR9 promoter sequence
   Search SABiosciences Chromatin IP Primers for XKR9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat XKR9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q13.3   Ensembl cytogenetic band:  8q13.3   HGNC cytogenetic band: 8q13.3

XKR9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
XKR9 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08P071581:  view genomic region     (about GC identifiers)

Start:
71,581,600 bp from pter      End:
71,702,606 bp from pter
Size:
121,007 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: XKR9_HUMAN, Q5GH70 (See protein sequence)
Recommended Name: XK-related protein 9  
Size: 373 amino acids; 43406 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Secondary accessions: B2RNS9 B9EH74

Explore the universe of human proteins at neXtProt for XKR9: NX_Q5GH70

Explore proteomics data for XKR9 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q5GH70

  • XKR9 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    XKR9 Protein Expression
    REFSEQ proteins: NP_001011720.1  
    ENSEMBL proteins: 
     ENSP00000430781   ENSP00000386141   ENSP00000431088   ENSP00000428904  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral to membrane IEA--

    XKR9 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR018629 Transport_prot_XK

    Graphical View of Domain Structure for InterPro Entry Q5GH70

    ProtoNet protein and cluster: Q5GH70

    UniProtKB/Swiss-Prot: XKR9_HUMAN, Q5GH70
    Similarity: Belongs to the XK family


    XKR9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Phenotypes:
         1 GenomeRNAi human phenotype for XKR9:
     Increased cell number in G2M,  

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for XKR9

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for XKR9

    Search CenterWatch for drugs/clinical trials and news about XKR9

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for XKR9 gene: 
    NM_001011720.1  

    Unigene Cluster for XKR9:

    XK, Kell blood group complex subunit-related family, member 9
    Hs.458938  [show with all ESTs]
    Unigene Representative Sequence: AY534247
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000520092 ENST00000408926(uc003xyq.3 uc010lzd.3 uc010lze.3)
    ENST00000520030 ENST00000520273 ENST00000519350
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    Inhib. RNA
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat XKR9

    Additional mRNA sequence: 

    AY534247.1 BC111381.1 BC137104.1 BC137105.1 BC151845.1 

    2 DOTS entries:

    DT.95265708  DT.95149673 

    13 AceView cDNA sequences:

    BU674903 AW081706 AA897450 AW847396 BI752949 CD359427 AW847342 AW847339 
    AW847385 AW847408 BU932538 BX509391 BU853591 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    XKR9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    XKR9 Expression
    About this image


    See XKR9 Protein Expression from SPIRE MOPED and PaxDB
    SOURCE GeneReport for Unigene cluster: Hs.458938
        SABiosciences Custom PCR Arrays for XKR9
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for XKR9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for XKR9 gene from 6/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Xkr91 , 5 X Kell blood group precursor related family member more1, 5 80.88(n)1
    76.68(a)1
      1 (4.31 cM)5
    3812461  NM_001011873.21  NP_001011873.11 
     136687715 
    chicken
    (Gallus gallus)
    Aves XKR91 XK, Kell blood group complex subunit-related family, more 59.5(n)
    45.16(a)
      428363  NM_001034824.1  NP_001029996.1 
    lizard
    (Anolis carolinensis)
    Reptilia XKR96
    Uncharacterized protein
    44(a)
    1 ↔ 1
    4(32441097-32451229)
    zebrafish
    (Danio rerio)
    Actinopterygii xkr91 XK, Kell blood group complex subunit-related family, more 50.19(n)
    42.37(a)
      678537  NM_001012259.1  NP_001012259.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG325796
    --
    16(a)
    1 → many
    X(16217319-16219801)
    worm
    (Caenorhabditis elegans)
    Secernentea ced-86
    Cell death abnormality protein 8
    17(a)
    1 → many
    X(8414015-8416919)


    ENSEMBL Gene Tree for XKR9 (if available)
    TreeFam Gene Tree for XKR9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for XKR9 gene
    XKR62  XKR82  XKR72  XKR42  
    5 SIMAP similar genes for XKR9 using alignment to 3 protein entries:     XKR9_HUMAN (see all proteins):
    SENP7    CNOT2    NSD1    XKR8    KLHDC1

    XKR9 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1310 SNPs in XKR9 are shown (see all 1310)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1175702411,2
    C,F--71583523(+) TCATAA/GTCTCT 1 -- int11Minor allele frequency- G:0.07EA 120
    rs598715011,2
    C--71583565(+) TCTCA-/TTTTTTTT 1 -- int10--------
    rs117784321,2
    H--71583578(+) tttttA/Tttatt 1 -- int10--------
    rs2686431,2
    C--71583960(-) atagaC/Ttggat 1 -- int13Minor allele frequency- T:0.00NA WA 6
    rs1837558751,2
    --71584669(+) CCAAAC/TAGTAT 1 -- int10--------
    rs1475562561,2
    C--71584842(+) AGTTC-/TGTGTGT 1 -- int10--------
    rs1154361501,2
    F--71584945(+) TTCTCT/CACATC 1 -- int11Minor allele frequency- C:0.01WA 118
    rs1445705801,2
    --71584992(+) TATTCC/TAACTG 1 -- int10--------
    rs1891786321,2
    --71585000(+) CTGGGA/GTAAGA 1 -- int10--------
    rs1995157111,2
    C--71585004(+) GGGTA-/GATGAT 1 -- int10--------

    HapMap Linkage Disequilibrium report for XKR9 (71581600 - 71702606 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10/11 variations for XKR9 (see all 11):    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2669629CNV Deletion23128226
    esv2662380CNV Deletion23128226
    esv2737144CNV Deletion23290073
    esv2493520CNV Deletion19546169
    esv994889CNV Deletion20482838
    esv1992859CNV Deletion18987734
    esv2737145CNV Deletion23290073
    nsv520505CNV Loss19592680
    nsv512052CNV Loss21212237
    nsv6249CNV Loss18451855

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    XKR9 for disorders           About MalaCards

    XKR9 for disorders           About GeneDecksing

    Genetic Association Database (GAD): XKR9

    Export disorders for XKR9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for XKR9 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with XKR9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Genome-wide meta-analysis identifies 56 bone mineral d ensity loci and reveals 14 loci associated with risk of fracture. (PubMed id 22504420)1 Estrada K....Rivadeneira F. (2012)
    2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PubMed id 17903299)4 Kathiresan S....Cupples L.A. (2007)
    3. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PubMed id 17903301)4 Vasan R.S....Benjamin E.J. (2007)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    6. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 389668 HGNC: 20937 AceView: LOC389668 Ensembl:ENSG00000221947 euGenes: HUgn389668
    ECgene: XKR9 H-InvDB: XKR9

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for XKR9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for XKR9 gene:
    Search GeneIP for patents involving XKR9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
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