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Aliases & Descriptions for XKR7
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases C20orf159 2 , 3 XRG7 3 dJ310O13.4 2
Descriptions X Kell blood group precursor-related family, member 7 1 , 2 XK, Kell blood group complex subunit-related family, member 7 2 XK-related protein 7 2
Search outside databases for aliases for XKR7 gene
Summaries for XKR7 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Genomic Location for XKR7
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the XKR7 gene Entrez Gene cytogenetic band: 20q11.21 Ensembl cytogenetic band: 20q11.21 HGNC cytogenetic band: 20q11.21 XKR7 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure
GeneLoc location for GC20P030020:
(about GC identifiers )
Start:
30,019,466 bp from pter
End:
30,049,917 bp from pter
Size:
30,452 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000020.9 NT_028392.5 Proteins for XKR7
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: XKR7_HUMAN, Q5GH72 (See
protein sequence )Recommended Name: XK-related protein 7 Size : 579 amino acids; 63826 Da
Subcellular location : Membrane; Multi-pass membrane protein (Potential)
Secondary accessions : Q9NUG5
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_001011718.1 ENSEMBL proteins: ENSP00000217299 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0016020 membrane
IEA -- GO:0016021 integral to membrane
IEA --
About this table Antibodies for XKR7: Assays for XKR7:
Protein
Domains/ Families for XKR7(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q5GH72 ProtoNet protein and cluster: Q5GH72
UniProtKB/Swiss-Prot: XKR7_HUMAN, Q5GH72 Similarity : Belongs to the XK family
Gene Function for XKR7
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): XM_293160 Applied Biosystems Silencer ® siRNAs for XKR7 Sigma-Aldrich siRNA for XKR7 Sigma-Aldrich shRNA for XKR7 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001011718                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001011718                                  untagged cDNA clone in CMV expression vector: NM_001011718  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001011718 Pathways & Interactions for XKR7
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Drugs & Compounds for XKR7 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for XKR7
Transcripts for XKR7(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): XM_293160 Sigma-Aldrich siRNA for XKR7 Sigma-Aldrich shRNA for XKR7 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001011718
REFSEQ mRNAs for XKR7 gene: NM_001011718.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001011718
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001011718                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001011718                                  untagged cDNA clone in CMV expression vector: NM_001011718  
Additional cDNA sequence: AY534245.1
1 DOTS entry : DT.40220862
1 AceView cDNA sequence :BM461448
highest scoring ESTs for XKR7 :AA976188 AI655389 AY534245 BE504230 BM461448 BX279951 NM_001011718
Unigene Cluster for XKR7: XK, Kell blood group complex subunit-related family, member 7 Hs.666444 [show with all ESTs ] Unigene Representative Sequence: AY534245 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000217299
Expression for XKR7
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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XKR7 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for XKR7 1 Data from GNF BioGPS About these images About these images CGAP SAGE TAG: GAGGGGTGGASOURCE GeneReport for Unigene cluster: Hs.666444
Orthologs for XKR7
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for XKR7 gene from 5/7 species (see all 7
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
XKR71
--
XK, Kell blood group complex subunit-related family, more
92.06(n) 93.09(a)
485827 XM_542951.2 XP_542951.2
chimpanzee (Pan troglodytes)
XKR71
--
XK, Kell blood group complex subunit-related family, more
99.42(n) 99.14(a)
458161 NM_001033034.1 NP_001028206.1
cow (Bos taurus)
XKR71
--
XK, Kell blood group complex subunit-related family, more
91.19(n) 92.23(a)
518090 XM_596274.2 XP_596274.2
rat (Rattus norvegicus)
Xkr71
--
XK, Kell blood group complex subunit-related family, more
88.31(n) 91.19(a)
311549 NM_001012092.1 NP_001012092.1
mouse (Mus musculus)
Xkr71 , 5
25
X Kell blood group precursor related family member more 1, 5
88.08(n) 1 91.19(a) 1
228787 1 NM_001011732.1 1 NP_001011732.1 1 AL928862 5 AY534253 5
About this table Species with no ortholog for XKR7 ENSEMBL Gene Tree for XKR7 Paralogs for XKR7 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for XKR7 gene XKR6 2 XKR5 2 XKR4 2
SNPs/Variants for XKR7 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for XKR7 (up to first 250kb)
Disorders & Mutations for XKR7
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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Medical News for XKR7 (Possibly Related Articles in
Doctor's Guide )
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Publications for XKR7 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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2 PubMed articles for XKR7 gene :
Search for XKR7
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing XKR7
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing XKR7
(According to HUGE )
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Specialized Databases showing XKR7 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for XKR7 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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