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Aliases for XIRP2-AS1 Gene

Subcategory (RNA class) for XIRP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for XIRP2-AS1 Gene

  • XIRP2 Antisense RNA 1 2 3 5
  • XIRP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for XIRP2-AS1 Gene

Previous GeneCards Identifiers for XIRP2-AS1 Gene

  • GC02M167981

Summaries for XIRP2-AS1 Gene

GeneCards Summary for XIRP2-AS1 Gene

XIRP2-AS1 (XIRP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XIRP2-AS1 Gene

Genomics for XIRP2-AS1 Gene

Regulatory Elements for XIRP2-AS1 Gene

Enhancers for XIRP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F167140 0.8 Ensembl ENCODE 16.6 -0.2 -184 1.9 JUND JUN BHLHE40 SIN3A FOS MAFK XIRP2-AS1 XIRP2 B3GALT1
GH02F167192 0.5 Ensembl ENCODE 26.1 -52.0 -52001 0.7 XIRP2-AS1 XIRP2 B3GALT1
GH02F167134 0.7 Ensembl ENCODE 14.5 +5.5 5513 2.1 PKNOX1 JUND FOS XIRP2-AS1 XIRP2 PIR51196
GH02F167189 0.2 ENCODE 15.5 -49.1 -49112 0.8 XIRP2-AS1 XIRP2 B3GALT1
GH02F167129 0.4 FANTOM5 0.4 +10.9 10905 0.4 BHLHE40 XIRP2-AS1 PIR51196
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around XIRP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for XIRP2-AS1 Gene

Chromosome:
2
Start:
167,122,809 bp from pter
End:
167,140,955 bp from pter
Size:
18,147 bases
Orientation:
Minus strand

Genomic View for XIRP2-AS1 Gene

Genes around XIRP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
XIRP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for XIRP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XIRP2-AS1 Gene

Proteins for XIRP2-AS1 Gene

Post-translational modifications for XIRP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for XIRP2-AS1 Gene

Domains & Families for XIRP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for XIRP2-AS1 Gene

Function for XIRP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for XIRP2-AS1 Gene

Localization for XIRP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for XIRP2-AS1 Gene

Pathways & Interactions for XIRP2-AS1 Gene

SuperPathways for XIRP2-AS1 Gene

No Data Available

Interacting Proteins for XIRP2-AS1 Gene

Gene Ontology (GO) - Biological Process for XIRP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for XIRP2-AS1 Gene

Transcripts for XIRP2-AS1 Gene

mRNA/cDNA for XIRP2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for XIRP2-AS1 Gene

No ASD Table

Relevant External Links for XIRP2-AS1 Gene

GeneLoc Exon Structure for
XIRP2-AS1
ECgene alternative splicing isoforms for
XIRP2-AS1

Expression for XIRP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for XIRP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for XIRP2-AS1 Gene

This gene is overexpressed in Testis (x33.9) and Heart - Left Ventricle (x12.8).
genes like me logo Genes that share expression patterns with XIRP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for XIRP2-AS1 Gene

Orthologs for XIRP2-AS1 Gene

Evolution for XIRP2-AS1 Gene

ENSEMBL:
Gene Tree for XIRP2-AS1 (if available)
TreeFam:
Gene Tree for XIRP2-AS1 (if available)

No data available for Orthologs for XIRP2-AS1 Gene

Paralogs for XIRP2-AS1 Gene

No data available for Paralogs for XIRP2-AS1 Gene

Variants for XIRP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for XIRP2-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1004767 -- 167,141,468(-) TCTTC(C/T)GATAT intron-variant, upstream-variant-2KB
rs1004768 -- 167,141,451(-) TACTT(C/G)TTCAT intron-variant, upstream-variant-2KB
rs1004769 -- 167,141,307(-) AATAC(A/T)TATTT intron-variant, upstream-variant-2KB
rs1005067 -- 167,139,698(+) CATAT(C/G)TTATT intron-variant
rs10497317 -- 167,123,231(+) AACTA(G/T)GAGTA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for XIRP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2672990 CNV deletion 23128226
esv3593278 CNV loss 21293372

Relevant External Links for XIRP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
XIRP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for XIRP2-AS1 Gene

Disorders for XIRP2-AS1 Gene

Relevant External Links for XIRP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
XIRP2-AS1

No disorders were found for XIRP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for XIRP2-AS1 Gene

Publications for XIRP2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for XIRP2-AS1 Gene

Sources for XIRP2-AS1 Gene

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