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Aliases & Descriptions for XDH
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| OTTHUMP00000125231 2 | | XDHA 3 | | XO 1, 2 | | XOR 1, 2 |
| | | Descriptions |
|---|
| xanthene dehydrogenase 1, 2 | | xanthine dehydrogenase 2 | | xanthine oxidase 2 | | xanthine oxidoreductase 2 |
|
| | Search outside databases for aliases for XDH genePrevious GC identifers: GC02M031482 GC02M031665 GC02M031533 |
Summaries for XDH(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for XDH: Xanthine dehydrogenase belongs to the group of molybdenum-containing hydroxylases involved in the oxidative metabolism of purines. The enzyme is a homodimer. Xanthine dehydrogenase can be converted to xanthine oxidase by reversible sulfhydryl oxidation or by irreversible proteolytic modification. Defects in xanthine dehydrogenase cause xanthinuria, may contribute to adult respiratory stress syndrome, and may potentiate influenza infection through an oxygen metabolite-dependent mechanism. [provided by RefSeq] UniProtKB/Swiss-Prot: XDH_HUMAN, P47989Function: This enzyme can be converted from the dehydrogenase form (D) to the oxidase form (O) irreversibly by proteolysis or reversibly through the oxidation of sulfhydryl groupsGene Wiki entry for XDH (Xanthine_dehydrogenase) |
Genomic Location for XDH
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the XDH gene 
Entrez Gene cytogenetic band: 2p23.1 Ensembl cytogenetic band: 2p23.1 HGNC cytogenetic band: 2p23.1XDH Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M031470:
(about GC identifiers)
Start:
|
31,410,692 bp from pter |
End:
|
31,491,115 bp from pter |
Size:
|
80,424 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000002.10 NT_022184.14
| Proteins for XDH
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: XDH_HUMAN, P47989 (See
protein sequence)Recommended Name: Xanthine dehydrogenase/oxidase Size: 1333 amino acids; 146424 Da
Cofactor: Binds 2 2Fe-2S clusters
Cofactor: FAD
Cofactor: Molybdopterin
Subunit: Homodimer. Interacts with BTN1A1 (By similarity)
Subcellular location: Peroxisome
PDB structure from and Proteopedia :2CKJ (3D)
 2E1Q (3D)
 
Secondary accessions: Q16681 Q16712 Q4PJ16Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000370.2
ENSEMBL proteins: ENSP00000368727
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for XDH: Assays for XDH: | Protein
Domains/ Families for XDH(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P47989
ProtoNet protein and cluster: P47989 5/6 Blocks protein families (see all 6
): IPB000674 Aldehyde oxidase and xanthine dehydrogenase IPB001041 Ferredoxin IPB002346 Molybdopterin dehydrogenase IPB002888 [2Fe-2S]-binding IPB005107 CO dehydrogenase flavoprotein C-terminal domain
UniProtKB/Swiss-Prot: XDH_HUMAN, P47989Similarity: Belongs to the xanthine dehydrogenase familySimilarity: Contains 1 2Fe-2S ferredoxin-type domainSimilarity: Contains 1 FAD-binding PCMH-type domain | Gene Function for XDH
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000379
Applied Biosystems Silencer® siRNAs for XDH
Sigma-Aldrich siRNA and siRNA Panels for XDH  Sigma-Aldrich shRNA for XDH  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000379                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000379                                  untagged cDNA clone in CMV expression vector: NM_000379 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000379
UniProtKB/Swiss-Prot: XDH_HUMAN, P47989Function: This enzyme can be converted from the dehydrogenase form (D) to the oxidase form (O) irreversibly by proteolysis or reversibly through the oxidation of sulfhydryl groupsCatalytic activity: Xanthine + NAD(+) + H(2)O = urate + NADHCatalytic activity: Hypoxanthine + NAD(+) + H(2)O = xanthine + NADHCatalytic activity: Xanthine + H(2)O + O(2) = urate + H(2)O(2)Genatlas biochemistry entry for XDH:xanthine oxidase (dehydrogenase),catalyzing the oxidation of hypoxanthine to purine and purine to uric acid,adenine nucleotide catalytic pathway9 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Xdh):
5/9 Gene Ontology (GO) molecular function terms (links to tree view) (see all 9
): About this table | Pathways & Interactions for XDH
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for XDH (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for XDH 
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for XDH(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  | Sigma-Aldrich Small Molecules for XDH: Inhibitor |
Browse Tocris compounds for XDH 10/55 Novoseek chemical compound relationships for XDH gene (see all 55
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| xanthine |
99.22 |
5677 |
8038267 (10), 2170383 (10), 9023782 (9), 17906999 (8) (see all 99) |
| superoxide |
91.76 |
962 |
13678240 (5), 16650385 (5), 12911273 (5), 14738912 (4) (see all 99) |
| 2-hydroxy-6-methylpurine |
88.54 |
10 |
18063585 (2), 11330474 (2), 11456936 (2), 8385992 (1) (see all 6) |
| uric acid |
87.30 |
322 |
8922344 (6), 8134172 (4), 8572327 (4), 17944674 (4) (see all 99) |
| molybdenum |
84.59 |
120 |
8302261 (5), 7642590 (5), 11602591 (3), 11302742 (3) (see all 73) |
| oxygen |
83.34 |
462 |
12637268 (5), 14694147 (3), 9367530 (3), 7757199 (3) (see all 99) |
| afmu |
81.43 |
40 |
1458773 (3), 10197295 (2), 11393735 (2), 12580991 (2) (see all 14) |
| 1-methylxanthine |
81.12 |
69 |
1458773 (5), 8730975 (3), 10027663 (2), 10197295 (2) (see all 19) |
| 6-thiouric acid |
80.26 |
11 |
17378811 (1), 17081813 (1), 8520521 (1), 18043486 (1) (see all 6) |
| purine |
78.53 |
106 |
12184628 (3), 16206825 (3), 14694147 (2), 8439471 (2) (see all 72) |
About this table
3 PharmGKB drug compound relationships for XDH geneAbout this table
|
Transcripts for XDH(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000379
Sigma-Aldrich siRNA and siRNA Panels for XDH  Sigma-Aldrich shRNA for XDH  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000379 REFSEQ mRNAs for XDH gene: NM_000379.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000379               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000379                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000379                                  untagged cDNA clone in CMV expression vector: NM_000379  Additional cDNA sequence: CR614711.1 D11456.2 U06117.1 U39487.1 3 DOTS entries: DT.309418 DT.100747324 DT.40219821 24/38 AceView cDNA sequences (see all 38
):D11456 AA588742 AI580045 CR614711 U39487 AA386219 AA877996 CD238871 U06117 CD238503 BV183408 AW444632 BG617489 CD239432 NM_000379 BX350215 AA584403 BP382907 AL552489 AL709033 AK130114 BM969390 AI673575 BG568919
highest scoring ESTs for XDH:U39487 AL709033 D11456 U06117 AA584403 AA588742 AI553678 AI673575 AW291191 AW444632 Unigene Cluster for XDH: Xanthine dehydrogenase Hs.250 [show with all ESTs]Unigene Representative Sequence: NM_000379
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000379416
|
Expression for XDH
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| XDH expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for XDH
1 / 2 / 3 6 probe-sets matching XDH gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.250
Expression variation in blood from EXPOLDB for XDH |
Orthologs for XDH
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for XDH gene from 5/22 species (see all 22
)
About this table Species with no ortholog for XDH
ENSEMBL Gene Tree for XDH | Paralogs for XDH(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for XDH gene
- AOX12
|
SNPs/Variants for XDH(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for XDH (up to first 250kb)
|
Disorders & Mutations for XDH
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 607633 disorders: 278300 UniProtKB/Swiss-Prot: XDH_HUMAN, P47989
Defects in XDH are the cause of xanthinuria type 1 (XU1) [MIM:278300]. Xanthinuria is characterized by excretion of very large amounts of xanthine in the urine and a tendency to form xanthine stones. Uric acid is strikingly diminished in serum and urine. XU1 is due to isolated xanthine dehydrogenase. XU1 patients can metabolize allopurinol May contribute to adult respiratory stress syndrome (ARDS) and may potentiate influenza infection through an oxygen metabolite-dependent mechanism10/94 Novoseek disease relationships for XDH gene (see all 94
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| xanthinuria, type i |
90.08 |
28 |
7667222 (4), 8976115 (2), 2379312 (1), 10844591 (1) (see all 17) |
| xanthinuria |
88.86 |
31 |
2379312 (4), 10844591 (4), 12670960 (2), 7829092 (2) (see all 17) |
| molybdenum cofactor deficiency |
83.82 |
16 |
8812740 (2), 9634514 (1), 12385777 (1), 7474893 (1) (see all 14) |
| hyperuricemia |
77.87 |
29 |
16022578 (2), 19075968 (2), 18409526 (1), 17213786 (1) (see all 22) |
| gout |
74.13 |
41 |
16022578 (2), 19075968 (2), 15751090 (2), 10533512 (1) (see all 29) |
| xanthinuria, type ii |
73.41 |
3 |
11302742 (2), 17368066 (1) |
| hypouricemia |
63.99 |
4 |
8976110 (1), 14624414 (1), 1912172 (1) |
| cell damage |
61.84 |
30 |
2390135 (2), 9928765 (2), 15853750 (1), 16602626 (1) (see all 21) |
| oxidase deficiency |
59.39 |
1 |
15025809 (1) |
| lesch-nyhan syndrome |
52.02 |
1 |
8976090 (1) |
About this table
Genatlas disease: XDH xanthinuria type I Human Gene Mutation Database: XDH Human Genome Epidemiology Navigator: XDH (7 documents)
|
Medical News for XDH(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for XDH (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1318 PubMed articles for XDH gene (see all 1318
):- Cloning of the cDNA encoding human xanthine dehydrogenase (oxidase): structural analysis of the protein and chromosomal location of the gene. (PubMed id 8224915)2, 3, 4 Ichida K.... Nishino T. (1993)
- Identification of two mutations in human xanthine dehydrogenase gene responsible for classical type I xanthinuria. (PubMed id 9153281)1, 3, 4 Ichida K....Sakai O. (1997)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)3, 4 Olsen J.V....Mann M. (2006)
- An in vitro study on methotrexate hydroxylation in rat and human liver. (PubMed id 9728483)1, 7 Chladek J....Sispera L. (1997)
- Cloning and expression in vitro of human xanthine dehydrogenase/oxidase. (PubMed id 8670112)3, 4 Saksela M. and Raivio K.O. (1996)
- Molecular cloning, tissue expression of human xanthine dehydrogenase. (PubMed id 7575623)3, 4 Xu P....Hoidal J.R. (1995)
- Molecular cloning, tissue expression of human xanthine dehydrogenase. (PubMed id 8135849)3, 4 Xu P.... Hoidal J.R. (1994)
- Migratory activity of human breast cancer cells is modulated by differential expression of xanthine oxidoreductase. (PubMed id 18767115)1, 3 Fini M.A....Wright R.M. (2008)
- Xanthine oxidoreductase and xanthine oxidase in human cornea. (PubMed id 12168784)1, 3 Cejkova J....Midelfart A. (2002)
- Decreased xanthine oxidoreductase is a predictor of poor prognosis in early-stage gastric cancer. (PubMed id 16935971)1, 3 Linder N....Lundin J. (2006)
|
Search for XDH
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing XDH
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing XDH
(According to HUGE)
About This Section
| -- |
Specialized Databases showing XDH(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| GeneReviews | http://www.genetests.org/query?gene=XDH | | NIEHS-SNPs | http://egp.gs.washington.edu/data/xdh/ |
|
| | | About This Section
| --
| Services for XDH(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for XDH:

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Incremental update: 13 Oct 2009
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