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Aliases for XCR1 Gene

Aliases for XCR1 Gene

  • X-C Motif Chemokine Receptor 1 2 3 5
  • Chemokine (C Motif) XC Receptor 1 2 3
  • Chemokine (C Motif) Receptor 1 2 3
  • XC Chemokine Receptor 1 3 4
  • Lymphotactin Receptor 3 4
  • CCXCR1 3 4
  • GPR5 3 4
  • G Protein-Coupled Receptor 5 3
  • G-Protein Coupled Receptor 5 4
  • Chemokine XC Receptor 1 3

External Ids for XCR1 Gene

Previous HGNC Symbols for XCR1 Gene

  • GPR5
  • CCXCR1

Previous GeneCards Identifiers for XCR1 Gene

  • GC03M045303
  • GC03M045881
  • GC03M046023

Summaries for XCR1 Gene

Entrez Gene Summary for XCR1 Gene

  • The protein encoded by this gene is a chemokine receptor belonging to the G protein-coupled receptor superfamily. The family members are characterized by the presence of 7 transmembrane domains and numerous conserved amino acids. This receptor is most closely related to RBS11 and the MIP1-alpha/RANTES receptor. It transduces a signal by increasing the intracellular calcium ions level. The viral macrophage inflammatory protein-II is an antagonist of this receptor and blocks signaling. Two alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for XCR1 Gene

XCR1 (X-C Motif Chemokine Receptor 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Akt Signaling. GO annotations related to this gene include G-protein coupled receptor activity and chemokine receptor activity. An important paralog of this gene is CCR1.

UniProtKB/Swiss-Prot for XCR1 Gene

  • Receptor for chemokines SCYC1 and SCYC2. Subsequently transduces a signal by increasing the intracellular calcium ions level. Receptor for XCL1/Lymphotactin.

Gene Wiki entry for XCR1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XCR1 Gene

Genomics for XCR1 Gene

Regulatory Elements for XCR1 Gene

Enhancers for XCR1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F045687 0.9 Ensembl ENCODE 27.4 +335.8 335823 8.1 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SACM1L XCR1 RN7SL145P LIMD1 ZDHHC3 EXOSC7 LARS2-AS1 CCR9 SDHDP4 LIMD1-AS1
GH03F045638 1.3 FANTOM5 Ensembl ENCODE 18.2 +384.1 384132 9.6 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 MEF2D LIMD1 SACM1L XCR1 RPS24P8 ZNF501 RN7SL145P LARS2-AS1 LIMD1-AS1 EXOSC7 ZDHHC3
GH03F046973 0.4 ENCODE 18.2 -950.7 -950683 9.7 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF766 CCDC12 XCR1 NBEAL2 BOLA2P2 SCAP SMARCC1 PTH1R GC03P046964
GH03F045387 0.2 ENCODE 18.2 +638.9 638853 2.2 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 FOS LIMD1 XCR1 RN7SL145P EXOSC7 ZDHHC3 LARS2 LARS2-AS1
GH03F045052 1.5 FANTOM5 Ensembl ENCODE 18.1 +967.8 967799 14.5 HDGF PKNOX1 ARNT CREB3L1 YY1 ZNF766 FOS KLF13 REST TBX21 EXOSC7 LIMD1 CLEC3B CDCP1 XCR1 ZNF660 SACM1L RN7SL145P RNU5B-3P TMEM158
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around XCR1 on UCSC Golden Path with GeneCards custom track

Genomic Location for XCR1 Gene

Chromosome:
3
Start:
46,017,024 bp from pter
End:
46,027,742 bp from pter
Size:
10,719 bases
Orientation:
Minus strand

Genomic View for XCR1 Gene

Genes around XCR1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
XCR1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for XCR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XCR1 Gene

Proteins for XCR1 Gene

  • Protein details for XCR1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P46094-XCR1_HUMAN
    Recommended name:
    Chemokine XC receptor 1
    Protein Accession:
    P46094

    Protein attributes for XCR1 Gene

    Size:
    333 amino acids
    Molecular mass:
    38508 Da
    Quaternary structure:
    No Data Available

neXtProt entry for XCR1 Gene

Post-translational modifications for XCR1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for XCR1 Gene

Domains & Families for XCR1 Gene

Gene Families for XCR1 Gene

Protein Domains for XCR1 Gene

Suggested Antigen Peptide Sequences for XCR1 Gene

Graphical View of Domain Structure for InterPro Entry

P46094

UniProtKB/Swiss-Prot:

XCR1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with XCR1: view

Function for XCR1 Gene

Molecular function for XCR1 Gene

UniProtKB/Swiss-Prot Function:
Receptor for chemokines SCYC1 and SCYC2. Subsequently transduces a signal by increasing the intracellular calcium ions level. Receptor for XCL1/Lymphotactin.

Gene Ontology (GO) - Molecular Function for XCR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004950 chemokine receptor activity IEA,TAS --
genes like me logo Genes that share ontologies with XCR1: view
genes like me logo Genes that share phenotypes with XCR1: view

Animal Models for XCR1 Gene

MGI Knock Outs for XCR1:

Animal Model Products

  • Taconic Biosciences Mouse Models for XCR1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for XCR1 Gene

Localization for XCR1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for XCR1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for XCR1 Gene COMPARTMENTS Subcellular localization image for XCR1 gene
Compartment Confidence
plasma membrane 5
cytosol 4

Gene Ontology (GO) - Cellular Components for XCR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane TAS 9632725
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with XCR1: view

Pathways & Interactions for XCR1 Gene

genes like me logo Genes that share pathways with XCR1: view

SIGNOR curated interactions for XCR1 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for XCR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006935 chemotaxis IEA,TAS --
GO:0006954 inflammatory response TAS 9632725
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway TAS 10679309
GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger TAS 9632725
genes like me logo Genes that share ontologies with XCR1: view

Drugs & Compounds for XCR1 Gene

(4) Drugs for XCR1 Gene - From: DGIdb, IUPHAR, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
XCL1 Pharma Full agonist, Agonist 0
XCL2 Pharma Agonist 0
calcium Nutra 0
[<SUP>125</SUP>I]XCL1 (HUMAN) Pharma 0

(2) Additional Compounds for XCR1 Gene - From: IUPHAR

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
[<sup>125</sup>I]XCL1
Full agonist, Agonist
SEAP-XCL1
Full agonist, Agonist
genes like me logo Genes that share compounds with XCR1: view

Transcripts for XCR1 Gene

mRNA/cDNA for XCR1 Gene

(8) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for XCR1 Gene

Chemokine (C motif) receptor 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for XCR1 Gene

No ASD Table

Relevant External Links for XCR1 Gene

GeneLoc Exon Structure for
XCR1
ECgene alternative splicing isoforms for
XCR1

Expression for XCR1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for XCR1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for XCR1 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x10.7), Skin - Not Sun Exposed (Suprapubic) (x9.4), Spleen (x7.1), and Whole Blood (x6.1).

NURSA nuclear receptor signaling pathways regulating expression of XCR1 Gene:

XCR1

SOURCE GeneReport for Unigene cluster for XCR1 Gene:

Hs.248116
genes like me logo Genes that share expression patterns with XCR1: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for XCR1 Gene

Orthologs for XCR1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for XCR1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia XCR1 34 35
  • 99.5 (n)
cow
(Bos Taurus)
Mammalia XCR1 34 35
  • 83.98 (n)
dog
(Canis familiaris)
Mammalia XCR1 34 35
  • 83.54 (n)
rat
(Rattus norvegicus)
Mammalia Xcr1 34
  • 77.6 (n)
mouse
(Mus musculus)
Mammalia Xcr1 34 16 35
  • 76.07 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia XCR1 35
  • 62 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia XCR1 35
  • 60 (a)
OneToOne
chicken
(Gallus gallus)
Aves XCR1 34
  • 57.56 (n)
CCXCR1-L 35
  • 51 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia XCR1 35
  • 45 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia xcr1 34
  • 52.94 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100329796 34
  • 55.13 (n)
xcr1a 35
  • 39 (a)
OneToMany
XCR1 (1 of 4) 35
  • 38 (a)
OneToMany
XCR1 (4 of 4) 35
  • 37 (a)
OneToMany
XCR1 (2 of 4) 35
  • 35 (a)
OneToMany
Species where no ortholog for XCR1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for XCR1 Gene

ENSEMBL:
Gene Tree for XCR1 (if available)
TreeFam:
Gene Tree for XCR1 (if available)

Paralogs for XCR1 Gene

Variants for XCR1 Gene

Sequence variations from dbSNP and Humsavar for XCR1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10049103 -- 46,062,590(+) ctttt(G/T)ctcct intron-variant
rs10583362 -- 46,068,782(+) TGGAC(-/GTGT)GTGTG intron-variant
rs111293891 -- 46,053,621(+) AGAAT(-/C)AACTT intron-variant
rs11130085 -- 46,085,707(+) ATGCC(A/G)GCACC intron-variant
rs111404395 -- 46,051,298(+) CTGTA(-/AGTC)AGTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for XCR1 Gene

Variant ID Type Subtype PubMed ID
esv2759145 CNV loss 17122850
esv3596057 CNV loss 21293372
nsv965163 CNV duplication 23825009

Variation tolerance for XCR1 Gene

Residual Variation Intolerance Score: 61.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.81; 17.04% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for XCR1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
XCR1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for XCR1 Gene

Disorders for XCR1 Gene

Relevant External Links for XCR1

Genetic Association Database (GAD)
XCR1
Human Genome Epidemiology (HuGE) Navigator
XCR1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
XCR1

No disorders were found for XCR1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for XCR1 Gene

Publications for XCR1 Gene

  1. Isolation of three novel human genes encoding G protein-coupled receptors. (PMID: 7832990) Heiber M. … O'Dowd B.F. (DNA Cell Biol. 1995) 2 3 4 22 64
  2. Identification of single C motif-1/lymphotactin receptor XCR1. (PMID: 9632725) Yoshida T. … Yoshie O. (J. Biol. Chem. 1998) 3 4 22 64
  3. The herpesvirus 8 encoded chemokines vCCL2 (vMIP-II) and vCCL3 (vMIP-III) target the human but not the murine lymphotactin receptor. (PMID: 18426556) LA1ttichau H.R. (Virol. J. 2008) 3 22 64
  4. Genotypes and haplotypes of CCR2 and CCR3 genes in Japanese cedar pollinosis. (PMID: 17135764) Nakamura H. … Eboshida A. (Int. Arch. Allergy Immunol. 2007) 3 46 64
  5. Kaposi sarcoma-associated herpes virus targets the lymphotactin receptor with both a broad spectrum antagonist vCCL2 and a highly selective and potent agonist vCCL3. (PMID: 17403668) LA1ttichau H.R. … Schwartz T.W. (J. Biol. Chem. 2007) 3 22 64

Products for XCR1 Gene

Sources for XCR1 Gene

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