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Aliases for XAGE3 Gene

Aliases for XAGE3 Gene

  • X Antigen Family, Member 3 2 3
  • PLAC6 3 4 6
  • Placenta-Specific Gene 6 Protein 3 4
  • G Antigen Family D Member 4 3 4
  • Cancer/Testis Antigen 12.3 3 4
  • GAGED4 3 4
  • CT12.3 3 4
  • XAGE-3 3 4
  • Placenta-Specific 6; G Antigen, Family D, 4 2
  • Cancer/Testis Antigen Family 12, Member 3a 3
  • Cancer/Testis Antigen Family 12, Member 3b 3
  • Cancer/Testis Antigen Family 12 2
  • X Antigen Family Member 3 3
  • G Antigen, Family D, 4 3
  • Placenta-Specific 6 3
  • Protein XAGE-3 3
  • Member 3a 2
  • Member 3b 2
  • CT12.3a 3
  • CT12.3b 3
  • Pp9012 3

External Ids for XAGE3 Gene

Previous HGNC Symbols for XAGE3 Gene

  • PLAC6
  • GAGED4

Previous GeneCards Identifiers for XAGE3 Gene

  • GC0XM052775

Summaries for XAGE3 Gene

Entrez Gene Summary for XAGE3 Gene

  • This gene is a member of the XAGE subfamily, which belongs to the GAGE family. The GAGE genes are expressed in a variety of tumors and in some fetal and reproductive tissues. This gene is expressed in placenta and fetal liver/spleen, and may function in inhibiting cancer cell growth. The protein encoded by this gene shares a sequence similarity with other GAGE/PAGE proteins. Because of the expression pattern and the sequence similarity, this protein also belongs to a family of CT (cancer-testis) antigens. Alternative splicing of this gene generates 2 transcript variants differing in the 5' UTR. [provided by RefSeq, Jul 2008]

GeneCards Summary for XAGE3 Gene

XAGE3 (X Antigen Family, Member 3) is a Protein Coding gene. An important paralog of this gene is XAGE2.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XAGE3 Gene

Genomics for XAGE3 Gene

Genomic Location for XAGE3 Gene

Start:
52,862,525 bp from pter
End:
52,868,088 bp from pter
Size:
5,564 bases
Orientation:
Minus strand

Genomic View for XAGE3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for XAGE3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XAGE3 Gene

No data available for Regulatory Elements for XAGE3 Gene

Proteins for XAGE3 Gene

  • Protein details for XAGE3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WTP9-XAGE3_HUMAN
    Recommended name:
    X antigen family member 3
    Protein Accession:
    Q8WTP9
    Secondary Accessions:
    • Q5JS82
    • Q8WYS9

    Protein attributes for XAGE3 Gene

    Size:
    111 amino acids
    Molecular mass:
    12302 Da
    Quaternary structure:
    No Data Available

neXtProt entry for XAGE3 Gene

Proteomics data for XAGE3 Gene at MOPED

Post-translational modifications for XAGE3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for XAGE3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for XAGE3 Gene

Domains for XAGE3 Gene

Protein Domains for XAGE3 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for XAGE3 Gene

Graphical View of Domain Structure for InterPro Entry

Q8WTP9

UniProtKB/Swiss-Prot:

XAGE3_HUMAN :
  • Q8WTP9
Family:
  • Belongs to the GAGE family.
genes like me logo Genes that share domains with XAGE3: view

No data available for Gene Families for XAGE3 Gene

Function for XAGE3 Gene

Gene Ontology (GO) - Molecular Function for XAGE3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 23275563
genes like me logo Genes that share ontologies with XAGE3: view

Phenotypes for XAGE3 Gene

GenomeRNAi human phenotypes for XAGE3:
genes like me logo Genes that share phenotypes with XAGE3: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for XAGE3

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for XAGE3 Gene

Localization for XAGE3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for XAGE3 Gene COMPARTMENTS Subcellular localization image for XAGE3 gene
Compartment Confidence
mitochondrion 3
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for XAGE3 Gene

Pathways for XAGE3 Gene

SuperPathways for XAGE3 Gene

No Data Available

Interacting Proteins for XAGE3 Gene

Selected Interacting proteins: Q8WTP9-XAGE3_HUMAN for XAGE3 Gene via UniProtKB

Gene Ontology (GO) - Biological Process for XAGE3 Gene

None

No data available for Pathways by source for XAGE3 Gene

Transcripts for XAGE3 Gene

mRNA/cDNA for XAGE3 Gene

Unigene Clusters for XAGE3 Gene

X antigen family, member 3:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for XAGE3

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for XAGE3 Gene

No ASD Table

Relevant External Links for XAGE3 Gene

GeneLoc Exon Structure for
XAGE3
ECgene alternative splicing isoforms for
XAGE3

Expression for XAGE3 Gene

mRNA expression in normal human tissues for XAGE3 Gene

mRNA differential expression in normal tissues according to GTEx for XAGE3 Gene

This gene is overexpressed in Testis (25.5), Breast - Mammary Tissue (7.3), Liver (6.2), and Adipose - Subcutaneous (5.5).

SOURCE GeneReport for Unigene cluster for XAGE3 Gene Hs.43879

genes like me logo Genes that share expressions with XAGE3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for XAGE3 Gene

Orthologs for XAGE3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for XAGE3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia XAGE3 35
  • 99.1 (n)
  • 99.1 (a)
XAGE3 36
  • 99 (a)
OneToOne
Species with no ortholog for XAGE3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for XAGE3 Gene

ENSEMBL:
Gene Tree for XAGE3 (if available)
TreeFam:
Gene Tree for XAGE3 (if available)

Paralogs for XAGE3 Gene

Pseudogenes.org Pseudogenes for XAGE3 Gene

genes like me logo Genes that share paralogs with XAGE3: view

Variants for XAGE3 Gene

Sequence variations from dbSNP and Humsavar for XAGE3 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2491154 -- 52,868,564(-) GACAT(C/T)ATGAC upstream-variant-2KB
rs2491155 -- 52,868,547(-) CTGTG(C/T)TGCTG upstream-variant-2KB
rs2806851 -- 52,869,722(+) CCTCT(A/G)AATGA upstream-variant-2KB
rs2807031 -- 52,867,918(-) AGCAT(A/G)GCCCG upstream-variant-2KB, intron-variant
rs4143221 -- 52,866,535(+) AGGAG(A/C/G/T)ccggt missense, reference

Structural Variations from Database of Genomic Variants (DGV) for XAGE3 Gene

Variant ID Type Subtype PubMed ID
esv2740170 CNV Deletion 23290073
nsv435891 CNV Deletion 17901297
esv2740175 CNV Deletion 23290073

Relevant External Links for XAGE3 Gene

HapMap Linkage Disequilibrium report
XAGE3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for XAGE3 Gene

Disorders for XAGE3 Gene

No disorders were found for XAGE3 Gene.

No data available for UniProtKB/Swiss-Prot for XAGE3 Gene

Publications for XAGE3 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PMID: 15498874) Wan D. … Gu J. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  4. The XAGE family of cancer/testis-associated genes: alignment and expression profile in normal tissues, melanoma lesions and Ewing's sarcoma. (PMID: 11992404) Zendman A.J.W. … van Muijen G.N.P. (Int. J. Cancer 2002) 3 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for XAGE3 Gene

Sources for XAGE3 Gene

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