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Aliases for XAGE3 Gene

Aliases for XAGE3 Gene

  • X Antigen Family, Member 3 2 3
  • Placenta-Specific Gene 6 Protein 3 4
  • G Antigen Family D Member 4 3 4
  • Cancer/Testis Antigen 12.3 3 4
  • GAGED4 3 4
  • CT12.3 3 4
  • XAGE-3 3 4
  • PLAC6 3 4
  • Placenta-Specific 6; G Antigen, Family D, 4 2
  • Cancer/Testis Antigen Family 12, Member 3a 3
  • Cancer/Testis Antigen Family 12, Member 3b 3
  • Cancer/Testis Antigen Family 12 2
  • G Antigen, Family D, 4 3
  • Placenta-Specific 6 3
  • Protein XAGE-3 3
  • Member 3a 2
  • Member 3b 2
  • CT12.3a 3
  • CT12.3b 3
  • Pp9012 3

External Ids for XAGE3 Gene

Previous HGNC Symbols for XAGE3 Gene

  • PLAC6
  • GAGED4

Previous GeneCards Identifiers for XAGE3 Gene

  • GC0XM052775

Summaries for XAGE3 Gene

Entrez Gene Summary for XAGE3 Gene

  • This gene is a member of the XAGE subfamily, which belongs to the GAGE family. The GAGE genes are expressed in a variety of tumors and in some fetal and reproductive tissues. This gene is expressed in placenta and fetal liver/spleen, and may function in inhibiting cancer cell growth. The protein encoded by this gene shares a sequence similarity with other GAGE/PAGE proteins. Because of the expression pattern and the sequence similarity, this protein also belongs to a family of CT (cancer-testis) antigens. Alternative splicing of this gene generates 2 transcript variants differing in the 5' UTR. [provided by RefSeq, Jul 2008]

GeneCards Summary for XAGE3 Gene

XAGE3 (X Antigen Family, Member 3) is a Protein Coding gene. An important paralog of this gene is XAGE2.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for XAGE3 Gene

Genomics for XAGE3 Gene

Genomic Location for XAGE3 Gene

52,862,525 bp from pter
52,868,135 bp from pter
5,611 bases
Minus strand

Genomic View for XAGE3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for XAGE3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for XAGE3 Gene

No data available for Regulatory Elements for XAGE3 Gene

Proteins for XAGE3 Gene

  • Protein details for XAGE3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    X antigen family member 3
    Protein Accession:
    Secondary Accessions:
    • Q5JS82
    • Q8WYS9

    Protein attributes for XAGE3 Gene

    111 amino acids
    Molecular mass:
    12302 Da
    Quaternary structure:
    No Data Available

neXtProt entry for XAGE3 Gene

Proteomics data for XAGE3 Gene at MOPED

Post-translational modifications for XAGE3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for XAGE3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for XAGE3 Gene

Domains & Families for XAGE3 Gene

Protein Domains for XAGE3 Gene


Suggested Antigen Peptide Sequences for XAGE3 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the GAGE family.
  • Belongs to the GAGE family.
genes like me logo Genes that share domains with XAGE3: view

No data available for Gene Families for XAGE3 Gene

Function for XAGE3 Gene

Gene Ontology (GO) - Molecular Function for XAGE3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 23275563
genes like me logo Genes that share ontologies with XAGE3: view

Phenotypes for XAGE3 Gene

genes like me logo Genes that share phenotypes with XAGE3: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for XAGE3

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for XAGE3 Gene

Localization for XAGE3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for XAGE3 Gene

Pathways & Interactions for XAGE3 Gene

SuperPathways for XAGE3 Gene

No Data Available

Interacting Proteins for XAGE3 Gene

Selected Interacting proteins: Q8WTP9-XAGE3_HUMAN for XAGE3 Gene via UniProtKB

Gene Ontology (GO) - Biological Process for XAGE3 Gene


No data available for Pathways by source and SIGNOR curated interactions for XAGE3 Gene

Drugs & Compounds for XAGE3 Gene

No Compound Related Data Available

Transcripts for XAGE3 Gene

mRNA/cDNA for XAGE3 Gene

Unigene Clusters for XAGE3 Gene

X antigen family, member 3:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for XAGE3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for XAGE3 Gene

No ASD Table

Relevant External Links for XAGE3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for XAGE3 Gene

mRNA expression in normal human tissues for XAGE3 Gene

mRNA differential expression in normal tissues according to GTEx for XAGE3 Gene

This gene is overexpressed in Testis (x25.5), Breast - Mammary Tissue (x7.3), Liver (x6.2), and Adipose - Subcutaneous (x5.5).

SOURCE GeneReport for Unigene cluster for XAGE3 Gene Hs.43879

genes like me logo Genes that share expression patterns with XAGE3: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for XAGE3 Gene

Orthologs for XAGE3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for XAGE3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia XAGE3 35
  • 99.1 (n)
  • 99.1 (a)
XAGE3 36
  • 99 (a)
Species with no ortholog for XAGE3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for XAGE3 Gene

Gene Tree for XAGE3 (if available)
Gene Tree for XAGE3 (if available)

Paralogs for XAGE3 Gene Pseudogenes for XAGE3 Gene

genes like me logo Genes that share paralogs with XAGE3: view

Variants for XAGE3 Gene

Sequence variations from dbSNP and Humsavar for XAGE3 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2491154 -- 52,868,564(-) GACAT(C/T)ATGAC upstream-variant-2KB
rs2491155 -- 52,868,547(-) CTGTG(C/T)TGCTG upstream-variant-2KB
rs2806851 -- 52,869,722(+) CCTCT(A/G)AATGA upstream-variant-2KB
rs2807031 -- 52,867,918(-) AGCAT(A/G)GCCCG upstream-variant-2KB, intron-variant, utr-variant-5-prime
rs5943751 -- 52,862,555(+) TATTT(A/C/T)GATAT utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for XAGE3 Gene

Variant ID Type Subtype PubMed ID
esv2740170 CNV Deletion 23290073
nsv435891 CNV Deletion 17901297
esv2740175 CNV Deletion 23290073

Variation tolerance for XAGE3 Gene

Residual Variation Intolerance Score: 50.44% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.09; 2.04% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for XAGE3 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for XAGE3 Gene

Disorders for XAGE3 Gene

Relevant External Links for XAGE3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with XAGE3: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for XAGE3 Gene

Publications for XAGE3 Gene

  1. A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. (PMID: 25217961) Al Olama A.A. … Haiman C.A. (Nat. Genet. 2014) 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67
  3. Development and application of a DNA microarray-based yeast two-hybrid system. (PMID: 23275563) Suter B. … Wanker E.E. (Nucleic Acids Res. 2013) 67
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 67
  5. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 67

Products for XAGE3 Gene

Sources for XAGE3 Gene

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