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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

XAGE3 Gene

protein-coding   GIFtS: 41
GCID: GC0XM052908

X Antigen Family, Member 3

(Previous names: placenta-specific 6; G antigen, family D, 4)
(Previous symbols: PLAC6, GAGED4)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
X Antigen Family, Member 31 2     Placenta-Specific 6; G Antigen, Family D, 41
PLAC61 2 3 5     CT12.3a2
GAGED41 2 3     CT12.3b2
Cancer/Testis Antigen 12.32 3     Cancer/Testis Antigen Family 12, Member 3a2
G Antigen Family D Member 42 3     Cancer/Testis Antigen Family 12, Member 3b2
Placenta-Specific Gene 6 Protein2 3     G Antigen, Family D, 42
CT12.32 3     Placenta-Specific 62
XAGE-32 3     pp90122
Cancer/Testis Antigen Family 121     Protein XAGE-32
Member 3a1     X Antigen Family Member 32
Member 3b1     

External Ids:    HGNC: 146181   Entrez Gene: 1706262   Ensembl: ENSG000001714027   OMIM: 3007405   UniProtKB: Q8WTP93   

Export aliases for XAGE3 gene to outside databases

Previous GC identifer: GC0XM052775


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for XAGE3 Gene:
This gene is a member of the XAGE subfamily, which belongs to the GAGE family. The GAGE genes are expressed in a
variety of tumors and in some fetal and reproductive tissues. This gene is expressed in placenta and fetal
liver/spleen, and may function in inhibiting cancer cell growth. The protein encoded by this gene shares a
sequence similarity with other GAGE/PAGE proteins. Because of the expression pattern and the sequence similarity,
this protein also belongs to a family of CT (cancer-testis) antigens. Alternative splicing of this gene generates
2 transcript variants differing in the 5' UTR. (provided by RefSeq, Jul 2008)

GeneCards Summary for XAGE3 Gene: 
XAGE3 (X antigen family, member 3) is a protein-coding gene. Diseases associated with XAGE3 include sarcoma, and melanoma. An important paralog of this gene is GAGE2D.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000023.10  NC_018934.2  NT_011630.14  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for XAGE3
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidXAGE3 promoter sequence
   Search SABiosciences Chromatin IP Primers for XAGE3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat XAGE3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xp11.22   Ensembl cytogenetic band:  Xp11.22   HGNC cytogenetic band: Xp11.22

XAGE3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
XAGE3 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XM052908:  view genomic region     (about GC identifiers)

Start:
52,891,557 bp from pter      End:
52,897,119 bp from pter
Size:
5,563 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: XAGE3_HUMAN, Q8WTP9 (See protein sequence)
Recommended Name: X antigen family member 3  
Size: 111 amino acids; 12302 Da
Secondary accessions: Q5JS82 Q8WYS9

Explore the universe of human proteins at neXtProt for XAGE3: NX_Q8WTP9

Explore proteomics data for XAGE3 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q8WTP9

  • XAGE3 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    XAGE3 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_570132.1  NP_573440.1  

    ENSEMBL proteins: 
     ENSP00000364640   ENSP00000303061  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR008625 GAGE

    Graphical View of Domain Structure for InterPro Entry Q8WTP9

    ProtoNet protein and cluster: Q8WTP9

    1 Blocks protein domain: IPB008625 GAGE

    UniProtKB/Swiss-Prot: XAGE3_HUMAN, Q8WTP9
    Similarity: Belongs to the GAGE family


    XAGE3 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI--
         
    XAGE3 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for XAGE3:
     Increased gamma-H2AX phosphory  Synthetic lethal with Ras 

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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for XAGE3

    1 Interacting protein for XAGE3 (Q8WTP91) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HTTP428581EBI-6448284,EBI-466029
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for XAGE3

    Search CenterWatch for drugs/clinical trials and news about XAGE3

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for XAGE3 gene (2 alternative transcripts): 
    NM_130776.1  NM_133179.2  

    Unigene Cluster for XAGE3:

    X antigen family, member 3
    Hs.43879  [show with all ESTs]
    Unigene Representative Sequence: CF993800
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000375491(uc004dre.3) ENST00000346279(uc004drf.3)
    miRNA
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    Inhib. RNA
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    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat XAGE3
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat XAGE3

    Additional mRNA sequence: 

    AF318372.1 AJ318881.1 BC062680.1 

    3 DOTS entries:

    DT.101970658  DT.97825141  DT.410605 

    24 AceView cDNA sequences:

    AJ318881 N32547 NM_130776 N41436 BG354572 BX283272 C18417 BC062680 
    AI189067 NM_133179 CF993800 N41892 D59091 AF318372 AI742551 BG436468 
    N41723 N40147 T84951 CB992682 CB994958 CB961487 BG436305 BG435916 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    XAGE3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    XAGE3 Expression
    About this image


    See XAGE3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for XAGE3

    SOURCE GeneReport for Unigene cluster: Hs.43879
        SABiosciences Custom PCR Arrays for XAGE3
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for XAGE3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of mammals.

    Orthologs for XAGE3 gene from 1/2 species (see all 2)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia --
    --
    --
    45(a)
    32(a)
    possible ortholog
    1 ↔ many
    X(42409468-42417781)
    X(44845511-44852279)


    ENSEMBL Gene Tree for XAGE3 (if available)
    TreeFam Gene Tree for XAGE3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for XAGE3 gene
    GAGE2D2  GAGE12H2  GAGE102  GAGE12I2  XAGE52  XAGE2B2  GAGE12C2  GAGE12E2  
    GAGE12D2  GAGE2E2  GAGE12  GAGE2C2  GAGE12F2  GAGE132  PAGE12  XAGE22  
    GAGE12G2  GAGE2B2  GAGE2A2  GAGE12J2  
    18/37 SIMAP similar genes for XAGE3 using alignment to 2 protein entries:     XAGE3_HUMAN (see all proteins) (see all similar genes):
    XAGE2    XAGE2B    XAGE1A    XAGE1B    XAGE1C    XAGE1D
    XAGE1E    XAGE5    XAGE-4    PAGE3    GAGE2D    GAGE8
    GAGE2A    GAGE2B    GAGE2C    GAGE2E    GAGE1    GAGE10

    XAGE3 for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for XAGE3
    PGOHUM00000245809 PGOHUM00000241340


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/172 SNPs in XAGE3 are shown (see all 172)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1123097771,2
    C--52891142(+) TGTGTG/ATACCA 2 -- ds50011Minor allele frequency- A:0.50WA 2
    rs1454966691,2
    --52891144(+) TGTGTA/GCCAGT 2 -- ds50010--------
    rs1890966071,2
    --52891154(+) TGTAAC/TCAGAA 2 -- ds50010--------
    rs1139292551,2
    C--52891162(+) GAATAC/GAAAAT 2 -- ds50010--------
    rs361787081,2
    C--52891170(+) AATTTC/TAAAAA 2 -- ds50010--------
    rs3704494511,2
    C--52891192(+) CCTTT-/CTTTTT 2 -- ds50010--------
    rs1444972941,2
    C--52891213(+) TCTCA-/CTCTGTC 2 -- ds50010--------
    rs1120026581,2
    C--52891259(+) TACCTG/ACATCC 2 -- ds50011Minor allele frequency- A:0.50WA 2
    rs1815578731,2
    --52891304(+) AGCCTC/TAGGAG 2 -- ds50010--------
    rs732064851,2
    C--52891331(+) TACATA/GTATAC 2 -- ds50010--------

    HapMap Linkage Disequilibrium report for XAGE3 (52891557 - 52897119 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for XAGE3:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2740175CNV Deletion23290073
    nsv435891CNV Deletion17901297
    esv2740170CNV Deletion23290073

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 300740    OMIM disorders: --

    2 diseases for XAGE3:    About MalaCards
    sarcoma    melanoma


    XAGE3 for disorders           About GeneDecksing


    Export disorders for XAGE3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for XAGE3 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with XAGE3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PubMed id 15498874)1, 2 Wan D....Gu J. (2004)
    4. The XAGE family of cancer/testis-associated genes: alignment and expression profile in normal tissues, melanoma lesions and Ewing's sarcoma. (PubMed id 11992404)1, 2 Zendman A.J.W....van Muijen G.N.P. (2002)
    5. Development and application of a DNA microarray-based yeast two-hybrid system. (PubMed id 23275563)1 Suter B....Wanker E.E. (2013)
    6. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    8. Novel genes in the PAGE and GAGE family of tumor antigens found by homology walking in the dbEST database. (PubMed id 10197611)1 Brinkmann U.... Pastan I. (1999)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 170626 HGNC: 14618 AceView: GAGED4 Ensembl:ENSG00000171402 euGenes: HUgn170626
    ECgene: XAGE3 H-InvDB: XAGE3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for XAGE3 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for XAGE3 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for XAGE3 gene:
    Search GeneIP for patents involving XAGE3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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