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XAGE1E Gene

protein-coding   GIFtS: 32
GCID: GC0XM052559

X Antigen Family, Member 1E

  See XAGE1E-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
X Antigen Family, Member 1E1 2     CTP92
Cancer/Testis Antigen 12.12 3     Cancer/Testis Antigen Family 12, Member 1e2
CT12.12 3     Cancer/Testis Associated Protein2
GAGED22 3     Protein XAGE-12
XAGE-12 3     X Antigen Family Member 12
G Antigen Family D Member 22 3     XAGE13
CT12.1E2     

External Ids:    HGNC: 183721   Entrez Gene: 6530672   Ensembl: ENSG000002043757   OMIM: 3007455   UniProtKB: Q9HD643   
ORGUL members:         

Export aliases for XAGE1E gene to outside databases

Previous GC identifers: GC0XU900700 GC0XM052273 GC0XP052257 GC0XP052259


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for XAGE1E Gene:
This gene is a member of the XAGE subfamily, which belongs to the GAGE family. The GAGE genes are expressed in a
variety of tumors and in some fetal and reproductive tissues. This gene is strongly expressed in Ewing's sarcoma,
alveolar rhabdomyosarcoma and normal testis. The protein encoded by this gene contains a nuclear localization
signal and shares a sequence similarity with other GAGE/PAGE proteins. Because of the expression pattern and the
sequence similarity, this protein also belongs to a family of CT (cancer-testis) antigens. Alternative splicing
of this gene, in addition to alternative transcription start sites, results in multiple transcript variants.
(provided by RefSeq, Jan 2010)

GeneCards Summary for XAGE1E Gene:
XAGE1E (X antigen family, member 1E) is a protein-coding gene. Diseases associated with XAGE1E include non-small cell lung carcinoma, and lung adenocarcinoma. An important paralog of this gene is XAGE1B.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the XAGE1E gene promoter:
         p53   AML1a   FOXC1   POU3F2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for XAGE1E

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat XAGE1E


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xp11.22   Ensembl cytogenetic band:  Xp11.22   HGNC cytogenetic band: Xp11.22

XAGE1E Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
XAGE1E gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XM052559:  view genomic region     (about GC identifiers)

Start:
52,541,053 bp from pter      End:
52,546,197 bp from pter
Size:
5,145 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: XAGE1_HUMAN, Q9HD64 (See protein sequence)
Recommended Name: X antigen family member 1  
Size: 81 amino acids; 9078 Da
Miscellaneous: According to PubMed:11992404, the transcription of XAGE1A is regulated by methylation of the CpG
island in the promoter, and four alternative RNA splicing variants, XAGE-1a, b, c have been identified
Caution: PubMed:17335148, examines the translation products of theses four XAGE1A transcripts, and finds that the
XAGE-1c transcript is possibly translated to 9- and 17-aa polypeptides and not to a protein consisting of 160
amino acids as shown in PubMed:11992404
Sequence caution: Sequence=AAG01401.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Sequence=AAH09538.2; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAC82986.1;
Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAI40888.1; Type=Erroneous gene
model prediction; Sequence=CAI40895.1; Type=Erroneous gene model prediction; Sequence=CAI41526.1; Type=Erroneous
gene model prediction; Sequence=CAI41531.1; Type=Erroneous gene model prediction; Sequence=CAI41534.1;
Type=Erroneous gene model prediction;
Secondary accessions: A6NJ94 Q5JPN8 Q5JPP0 Q5JPP3 Q8WWG5 Q8WWG6 Q969J6
Alternative splicing: 2 isoforms:  Q9HD64-2   Q9HD64-4   (XAGE-1a and XAGE-1b mRNAs are produced by alternative promoter usage. However, for both isoforms, the translation initiator codon remains the same, generating an identical protein. XAGE-1b is the predominant transcript, compared to XAGE-1a)

Explore the universe of human proteins at neXtProt for XAGE1E: NX_Q9HD64

Explore proteomics data for XAGE1E at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See XAGE1E Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001091073.2  NP_001091074.1  

    ENSEMBL proteins: 
     ENSP00000364717   ENSP00000364720   ENSP00000389983  

    XAGE1E Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR008625 GAGE

    Graphical View of Domain Structure for InterPro Entry Q9HD64

    ProtoNet protein and cluster: Q9HD64

    1 Blocks protein domain: IPB008625 GAGE

    UniProtKB/Swiss-Prot: XAGE1_HUMAN, Q9HD64
    Similarity: Belongs to the GAGE family


    Find genes that share domains with XAGE1E           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for XAGE1E
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular2
    nucleus2
    cytosol1
    mitochondrion1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for XAGE1E
    Interactions:

        Search GeneGlobe Interaction Network for XAGE1E

    1 Interacting protein for XAGE1E (Q9HD643) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBE2OQ9C0C93I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for XAGE1E (XAGE1)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for XAGE1E gene (3 alternative transcripts): 
    NM_001097604.2  NM_001097605.2  NM_001097603.1  

    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000463689 ENST00000375563(uc022bwr.1) ENST00000375567 ENST00000375570
    ENST00000429372(uc004dqu.3 uc004dqv.3)
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat XAGE1E
      QuantiFast Probe-based Assays in human, mouse, rat XAGE1E

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    XAGE1E expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    XAGE1E Expression
    About this image

    XAGE1E Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    XAGE1E Protein Expression

    UniProtKB/Swiss-Prot: XAGE1_HUMAN, Q9HD64
    Tissue specificity: In normal tissues, highly expressed in testis. Expressed also in many different types of
    cancers: highly expressed in breast cancer, prostate cancer and many types of lung cancers, including squamous
    cell carcinoma, small cell carcinoma, non-small cell carcinoma, and adenocarcinoma, as well as in Ewing's cell
    lines, in some Ewing's sarcoma patient samples, and in one of one alveolar rhabdomyosarcoma patient sample

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for XAGE1E

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and chimp.

    Orthologs for XAGE1E gene from 1 species (see representative species )    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chimpanzee
    (Pan troglodytes)
    Mammalia --
    Uncharacterized protein
    53(a)
    1 → many
    X(53112384-53117541)


    ENSEMBL Gene Tree for XAGE1E (if available)
    TreeFam Gene Tree for XAGE1E (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for XAGE1E gene
    XAGE1B1 2  XAGE1D2  XAGE1A2  XAGE1C2  
    1 SIMAP similar gene for XAGE1E using alignment to 1 protein entry:     XAGE1_HUMAN:
    XAGE3

    Find genes that share paralogs with XAGE1E           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for XAGE1E:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv994563CNV Loss20482838
    esv1004613CNV Loss20482838
    esv991419CNV Loss20482838
    esv1003754CNV Loss20482838
    esv28509CNV Gain+Loss19812545
    esv29848CNV Gain+Loss19812545
    nsv7445OTHER Inversion18451855

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 300745    OMIM disorders: --

    3 diseases for XAGE1E:    
    About MalaCards
    non-small cell lung carcinoma    lung adenocarcinoma    rhabdomyosarcoma

    1 disease from the University of Copenhagen DISEASES database for XAGE1E:
    non-small cell lung carcinoma

    Find genes that share disorders with XAGE1E           About GenesLikeMe


    Export disorders for XAGE1E gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for XAGE1E gene, integrated from 10 sources (see all 24):
    (articles sorted by number of sources associating them with XAGE1E)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification of XAGE-1 isoforms: predominant expression of XAGE-1b in testis and tumors. (PubMed id 17335148)1, 2 Sato S.... Nakayama E. (Cancer Immun. 2007)
    2. Characterization of overlapping XAGE-1 transcripts encoding a cancer testis antigen expressed in lung, breast, and other types of cancers. (PubMed id 12479262)1, 2 Egland K.A.... Pastan I. (Mol. Cancer Ther. 2002)
    3. The XAGE family of cancer/testis-associated genes: alignment and expression profile in normal tissues, melanoma lesions and Ewing's sarcoma. (PubMed id 11992404)1, 2 Zendman A.J.W....van Muijen G.N.P. (Int. J. Cancer 2002)
    4. XAGE-1, a new gene that is frequently expressed in Ewing's sarcoma. (PubMed id 10987281)1, 2 Liu X.F.... Pastan I. (Cancer Res. 2000)
    5. Heteroclitic serological response in esophageal and prostate cancer patients after NY-ESO-1 protein vaccination. (PubMed id 21413013)1 Kawada J....Nakayama E. (Int. J. Cancer 2012)
    6. NLS-dependent and insufficient nuclear localization of XAGE-1 splice variants. (PubMed id 21305256)1 Zhao R....Zhu N. (Oncol. Rep. 2011)
    7. [Association of XAGE-1 gene expression with clinical characteristics of lung cancer]. (PubMed id 20704819)1 Lai Q....Sun Y. (Zhongguo Fei Ai Za Zhi 2010)
    8. Epigenetic modulation of cancer-germline antigen gene expression in tumorigenic human mesenchymal stem cells: implications for cancer therapy. (PubMed id 19498007)1 Gjerstorff M....Ditzel H. (Am. J. Pathol. 2009)
    9. Prolonged survival of patients with lung adenocarcinoma expressing XAGE-1b and HLA class I antigens. (PubMed id 18752338)1 Kikuchi E....Nishimura M. (Cancer Immun. 2008)
    10. A dendritic cell-based tumour vaccine for lung cancer: full-length XAGE-1b protein-pulsed dendritic cells induce specific cytotoxic T lymphocytes in vitro. (PubMed id 18803763)1 Zhou Q....Wu Y.L. (Clin. Exp. Immunol. 2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 653067 HGNC: 18372 Ensembl:ENSG00000204375 euGenes: HUgn653067 ECgene: XAGE1E
    H-InvDB: XAGE1E

    (According to HUGE)
    About This Section

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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for XAGE1E Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for XAGE1E gene:
    Search GeneIP for patents involving XAGE1E

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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