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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

XAGE1C Gene

protein-coding   GIFtS: 37
GCID: GC0XP052511

X Antigen Family, Member 1C

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
X Antigen Family, Member 1C1 2     CT12.1C2
Cancer/Testis Antigen 12.12 3     CTP92
CT12.12 3     Cancer/Testis Antigen Family 12, Member 1c2
GAGED22 3     Cancer/Testis Associated Protein2
XAGE-12 3     Protein XAGE-12
G Antigen Family D Member 22 3     X Antigen Family Member 12
Cancer/Testis Antigen Family 121     XAGE13
Member 1c1     

External Ids:    HGNC: 306791   Entrez Gene: 6530482   Ensembl: ENSG000001834617   OMIM: 3007445   UniProtKB: Q9HD643   
ORGUL members:         
NONCODE14:n409116      

Export aliases for XAGE1C gene to outside databases

Previous GC identifers: GC0XU900703 GC0XP052529


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for XAGE1C Gene:
This gene is a member of the XAGE subfamily, which belongs to the GAGE family. The GAGE genes are expressed in a
variety of tumors and in some fetal and reproductive tissues. This gene is strongly expressed in Ewing's sarcoma,
alveolar rhabdomyosarcoma and normal testis. The protein encoded by this gene contains a nuclear localization
signal and shares a sequence similarity with other GAGE/PAGE proteins. Because of the expression pattern and the
sequence similarity, this protein also belongs to a family of CT (cancer-testis) antigens. Alternative splicing
of this gene, in addition to alternative transcription start sites, results in multiple transcript variants.
(provided by RefSeq, Jan 2010)

GeneCards Summary for XAGE1C Gene: 
XAGE1C (X antigen family, member 1C) is a protein-coding gene, and is affiliated with the lncRNA class. Diseases associated with XAGE1C include alveolar rhabdomyosarcoma, and lung adenocarcinoma. An important paralog of this gene is XAGE1E.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the XAGE1C gene promoter:
         p53   AML1a   FOXD1   POU3F2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for XAGE1C

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat XAGE1C


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xp11.22   Ensembl cytogenetic band:  Xp11.22   HGNC cytogenetic band: Xp11.22

XAGE1C Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
XAGE1C gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP052511:  view genomic region     (about GC identifiers)

Start:
52,511,761 bp from pter      End:
52,516,905 bp from pter
Size:
5,145 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: XAGE1_HUMAN, Q9HD64 (See protein sequence)
Recommended Name: X antigen family member 1  
Size: 81 amino acids; 9078 Da
Miscellaneous: According to PubMed:11992404, the transcription of XAGE1A is regulated by methylation of the CpG
island in the promoter, and four alternative RNA splicing variants, XAGE-1a, b, c have been identified
Caution: PubMed:17335148, examines the translation products of theses four XAGE1A transcripts, and finds that the
XAGE-1c transcript is possibly translated to 9- and 17-aa polypeptides and not to a protein consisting of 160
amino acids as shown in PubMed:11992404
Sequence caution: Sequence=AAG01401.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Sequence=AAH09538.2; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAC82986.1;
Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAI40888.1; Type=Erroneous gene
model prediction; Sequence=CAI40895.1; Type=Erroneous gene model prediction; Sequence=CAI41526.1; Type=Erroneous
gene model prediction; Sequence=CAI41531.1; Type=Erroneous gene model prediction; Sequence=CAI41534.1;
Type=Erroneous gene model prediction;
Secondary accessions: A6NJ94 Q5JPN8 Q5JPP0 Q5JPP3 Q8WWG5 Q8WWG6 Q969J6
Alternative splicing: 2 isoforms:  Q9HD64-2   Q9HD64-4   (XAGE-1a and XAGE-1b mRNAs are produced by alternative promoter usage. However, for both isoforms, the translation initiator codon remains the same, generating an identical protein. XAGE-1b is the predominant transcript, compared to XAGE-1a)

Explore the universe of human proteins at neXtProt for XAGE1C: NX_Q9HD64

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q9HD64

  • XAGE1C Protein expression data from MOPED1, PaxDb2 and MAXQB3 : --
    REFSEQ proteins (2 alternative transcripts): 
    NP_001091066.2  NP_001091067.1  

    ENSEMBL proteins: 
     ENSP00000364739   ENSP00000364738   ENSP00000382693   ENSP00000409639  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR008625 GAGE

    Graphical View of Domain Structure for InterPro Entry Q9HD64

    ProtoNet protein and cluster: Q9HD64

    1 Blocks protein domain: IPB008625 GAGE

    UniProtKB/Swiss-Prot: XAGE1_HUMAN, Q9HD64
    Similarity: Belongs to the GAGE family


    XAGE1C for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for XAGE1C 
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for XAGE1C

    1 Interacting protein for XAGE1C (Q9HD643) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBE2OQ9C0C93I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for XAGE1C (XAGE1)

    Search CenterWatch for drugs/clinical trials and news about XAGE1C / XAGE1

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for XAGE1C gene (3 alternative transcripts): 
    NM_001097597.2  NM_001097598.2  NM_001097602.1  

    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000375589 ENST00000505738 ENST00000375588 ENST00000338266(uc022bwq.1)
    ENST00000494476 ENST00000399795(uc004dqn.3 uc004dqo.3) ENST00000446098

    miRNA
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                         Customized lentivirus expression plasmids for stable overexpression of XAGE1C 
    Primer
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat XAGE1C

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for XAGE1C    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b
    SP1:                          -           -     -     -                     
    SP2:                          -                 -     -                     
    SP3:                                      -     -     -                     
    SP4:                          -                                             
    SP5:                                                                        


    ECgene alternative splicing isoforms for XAGE1C

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    XAGE1C expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    XAGE1C Expression
    About this image


    Genevestigator expression for XAGE1C

    UniProtKB/Swiss-Prot: XAGE1_HUMAN, Q9HD64
    Tissue specificity: In normal tissues, highly expressed in testis. Expressed also in many different types of
    cancers: highly expressed in breast cancer, prostate cancer and many types of lung cancers, including squamous
    cell carcinoma, small cell carcinoma, non-small cell carcinoma, and adenocarcinoma, as well as in Ewing's cell
    lines, in some Ewing's sarcoma patient samples, and in one of one alveolar rhabdomyosarcoma patient sample

        SABiosciences Custom PCR Arrays for XAGE1C
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for XAGE1C

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and chimp.

    Orthologs for XAGE1C gene from 1 species (see representative species )    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chimpanzee
    (Pan troglodytes)
    Mammalia XAGE1A6
    --
    53(a)
    1 → many
    X(53112384-53117541)


    ENSEMBL Gene Tree for XAGE1C (if available)
    TreeFam Gene Tree for XAGE1C (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for XAGE1C gene
    XAGE1E1 2  XAGE1D1 2  XAGE1A1 2  XAGE1B1 2  
    1 SIMAP similar gene for XAGE1C using alignment to 1 protein entry:     XAGE1_HUMAN:
    XAGE3

    XAGE1C for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    1 SNPs in XAGE1C are shown    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs2002481621,2
    C--52517243(+) TTTTTA/TAAAAA 3 -- ds50010--------

    HapMap Linkage Disequilibrium report for XAGE1C (52511761 - 52516905 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for XAGE1C:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv994563CNV Loss20482838
    esv1004613CNV Loss20482838
    esv991419CNV Loss20482838
    esv1003754CNV Loss20482838
    esv28509CNV Gain+Loss19812545
    esv29848CNV Gain+Loss19812545
    nsv7445OTHER Inversion18451855

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 300744    OMIM disorders: --

    14 diseases for XAGE1C:    About MalaCards
    alveolar rhabdomyosarcoma    lung adenocarcinoma    rhabdomyosarcoma    non-small cell lung carcinoma
    small cell carcinoma    sarcoma    lung cancer    melanoma
    adenocarcinoma    prostate cancer    squamous cell carcinoma    prostatitis
    esophagitis    breast cancer

    1 disease from the University of Copenhagen DISEASES database for XAGE1C:
    non-small cell lung carcinoma

    XAGE1C for disorders           About GeneDecksing


    Export disorders for XAGE1C gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for XAGE1C gene, integrated from 9 sources (see all 28):
    (articles sorted by number of sources associating them with XAGE1C)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification of XAGE-1 isoforms: predominant expression of XAGE-1b in testis and tumors. (PubMed id 17335148)1, 2 Sato S....Nakayama E. (2007)
    2. Characterization of overlapping XAGE-1 transcripts encoding a cancer testis antigen expressed in lung, breast, and other types of cancers. (PubMed id 12479262)1, 2 Egland K.A.... Pastan I. (2002)
    3. The XAGE family of cancer/testis-associated genes: alignment and expression profile in normal tissues, melanoma lesions and Ewing's sarcoma. (PubMed id 11992404)1, 2 Zendman A.J.W....van Muijen G.N.P. (2002)
    4. XAGE-1, a new gene that is frequently expressed in Ewing's sarcoma. (PubMed id 10987281)1, 2 Liu X.F.... Pastan I. (2000)
    5. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (2012)
    6. Heteroclitic serological response in esophageal and pr ostate cancer patients after NY-ESO-1 protein vaccination. (PubMed id 21413013)1 Kawada J....Nakayama E. (2012)
    7. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    8. NLS-dependent and insufficient nuclear localization of XAGE-1 splice variants. (PubMed id 21305256)1 Zhao R....Zhu N. (2011)
    9. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    10. [Association of XAGE-1 gene expression with clinical characteristics of lung cancer]. (PubMed id 20704819)1 Lai Q....Sun Y. (2010)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 653048 HGNC: 30679 Ensembl:ENSG00000183461 euGenes: HUgn653048 ECgene: XAGE1C
    H-InvDB: XAGE1C

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for XAGE1C Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for XAGE1C gene:
    Search GeneIP for patents involving XAGE1C

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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