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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

XAGE1B Gene

protein-coding   GIFtS: 33
GCID: GC0XP052239

X antigen family, member 1B
 Explore 16 diseases affiliated with
XAGE1B via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for XAGE1B    

Aliases
for XAGE1B gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
X Antigen Family, Member 1B1 2     CT12.1B2
Cancer/Testis Antigen 12.12 3     CTP92
Protein XAGE-12 3     Cancer/Testis Antigen Family 12, Member 1b2
CT12.12 3     Cancer/Testis Associated Protein2
GAGED22 3     G Antigen Family D Member 22
CT12.1b1     XAGE13

External Ids:    HGNC: 254001   Entrez Gene: 6532202   Ensembl: ENSG000002043827   OMIM: 3007435   UniProtKB: Q9HD643   
ORGUL members:         
NONCODE:n409116    

Export aliases for XAGE1B gene to outside databases

Previous GC identifers: GC0XU900702 GC0XM052272 GC0XP052530 GC0XM052561


Summaries
for XAGE1B gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for XAGE1B:
This gene is a member of the XAGE subfamily, which belongs to the GAGE family. The GAGE genes are expressed in a
variety of tumors and in some fetal and reproductive tissues. This gene is strongly expressed in Ewing's sarcoma,
alveolar rhabdomyosarcoma and normal testis. The protein encoded by this gene contains a nuclear localization signal
and shares a sequence similarity with other GAGE/PAGE proteins. Because of the expression pattern and the sequence
similarity, this protein also belongs to a family of CT (cancer-testis) antigens. Alternative splicing of this gene,
in addition to alternative transcription start sites, results in multiple transcript variants. (provided by RefSeq,
Jan 2010)




Genomic Views
for XAGE1B gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
 Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the XAGE1B gene promoter:
         p53   AML1a   FOXD1   POU3F2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for XAGE1B

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat XAGE1B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xp11.22   Ensembl cytogenetic band:  Xp11.22   HGNC cytogenetic band: Xp11.22

XAGE1B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
XAGE1B gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP052239:  view genomic region     (about GC identifiers)

Start:
 52,235,228 bp from pter      End:
 52,243,954 bp from pter
Size:
 8,727 bases      Orientation:
 plus strand

Proteins
for XAGE1B gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: GAGD2_HUMAN, Q9HD64 (See protein sequence)
Recommended Name: G antigen family D member 2  
Size: 81 amino acids; 9078 Da
Miscellaneous: According to PubMed:11992404, the transcription of XAGE1A is regulated by methylation of the CpG island
in the promoter, and four alternative RNA splicing variants, XAGE-1a, b, c have been identified
Caution: PubMed:17335148, examines the translation products of theses four XAGE1A transcripts, and finds that the
XAGE-1c transcript is possibly translated to 9- and 17-aa polypeptides and not to a protein consisting of 160 amino
acids as shown in PubMed:11992404
Sequence caution: Sequence=AAG01401.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Sequence=AAH09538.2; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAC82986.1;
Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAI40888.1; Type=Erroneous gene model
prediction; Sequence=CAI40895.1; Type=Erroneous gene model prediction; Sequence=CAI41526.1; Type=Erroneous gene model
prediction; Sequence=CAI41531.1; Type=Erroneous gene model prediction; Sequence=CAI41534.1; Type=Erroneous gene model
prediction;
Secondary accessions: A6NJ94 Q5JPN8 Q5JPP0 Q5JPP3 Q8WWG5 Q8WWG6 Q969J6
Alternative splicing: 2 isoforms:  Q9HD64-2   Q9HD64-4   (XAGE-1a and XAGE-1b mRNAs are produced by alternative promoter usage. However, for both isoforms, the translation initiator codon remains the same, generating an identical protein. XAGE-1b is the predominant transcript, compared to XAGE-1a)

Explore the universe of human proteins at neXtProt for XAGE1B: NX_Q9HD64

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9HD64

    • XAGE1B Protein expression data from MOPED and PaxDb: --
    REFSEQ proteins (2 alternative transcripts): 
    NP_001091063.2  NP_001091065.1  

    ENSEMBL proteins: 
     ENSP00000430130   ENSP00000364766   ENSP00000364763   ENSP00000388178   ENSP00000382704  

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    Protein Domains /
    Families
    for XAGE1B gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    XAGE1B for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR008625 GAGE

    Graphical View of Domain Structure for InterPro Entry Q9HD64

    ProtoNet protein and cluster: Q9HD64

    1 Blocks protein family: IPB008625 GAGE

    UniProtKB/Swiss-Prot: GAGD2_HUMAN, Q9HD64
    Similarity: Belongs to the GAGE family


    Function
    for XAGE1B gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    miRNA
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    Pathways & Interactions
    for XAGE1B gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for XAGE1B

    1 Interacting protein for XAGE1B (Q9HD643) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBE2OQ9C0C93I2D: score=1 
    About this table

    Drugs & Compounds
    for XAGE1B gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for XAGE1B
    Search CenterWatch for drugs/clinical trials and news about XAGE1B / GAGD2 

    Transcripts
    for XAGE1B gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for XAGE1B gene (3 alternative transcripts): 
    NM_001097594.2  NM_001097596.2  NM_001097595.1  

    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000518075 ENST00000375616 ENST00000519579 ENST00000375613 ENST00000375612(uc022bwp.1)
    ENST00000494039 ENST00000437949(uc004dqf.3 uc004dqg.3) ENST00000399805


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    Clone
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    Primer
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    GeneLoc Exon Structure


    Expression
    for XAGE1B gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    XAGE1B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image
    Genevestigator expression for XAGE1B

    UniProtKB/Swiss-Prot: GAGD2_HUMAN, Q9HD64
    Tissue specificity: In normal tissues, highly expressed in testis. Expressed also in many different types of cancers:
    highly expressed in breast cancer, prostate cancer and many types of lung cancers, including squamous cell carcinoma,
    small cell carcinoma, non-small cell carcinoma, and adenocarcinoma, as well as in Ewing's cell lines, in some Ewing's
    sarcoma patient samples, and in one of one alveolar rhabdomyosarcoma patient sample

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    In Situ
    Assay Products:     
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    Orthologs
    for XAGE1B gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    		   --

    ENSEMBL Gene Tree for XAGE1B (if available)
    TreeFam Gene Tree for XAGE1B (if available) 

    Paralogs
    for XAGE1B gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for XAGE1B gene
    XAGE1C1 2  XAGE1E1 2  XAGE1D1 2  XAGE1A1 2  
    1 SIMAP similar gene for XAGE1B using alignment to 1 protein entry:     GAGD2_HUMAN:
    XAGE3

    XAGE1B for paralogs           About GeneDecksing



    Genomic Variants
    for XAGE1B gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 15 variations for XAGE1B
         14 CNVs: 83524 73977 83525 83526 96688 73976 67978 96689 83523 83522 96685 96687 96684 96686
         1 Inversion: 37381
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    Disorders / Diseases
    for XAGE1B gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    XAGE1B for disorders           About GeneDecksing

    OMIM gene information: 300743    OMIM disorders: --

    16 diseases for XAGE1B:    About MalaCards
    alveolar rhabdomyosarcoma    rhabdomyosarcoma    sarcoma    non-small cell lung carcinoma
    small cell carcinoma    squamous cell carcinoma    melanoma metastasis    lung adenocarcinoma
    lung carcinoma    lung cancer    melanoma    adenocarcinoma
    carcinoma    prostate cancer    breast cancer    prostatitis


    Export disorders for XAGE1B gene to outside databases

    Publications
    for XAGE1B gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for XAGE1B gene, integrated from 9 sources (see all 24):
    (articles sorted by number of sources associating them with XAGE1B)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification of XAGE-1 isoforms: predominant expression of XAGE-1b in testis and tumors. (PubMed id 17335148)1, 2 Sato S....Nakayama E. (2007)
    2. Characterization of overlapping XAGE-1 transcripts encoding a cancer testis antigen expressed in lung, breast, and other types of cancers. (PubMed id 12479262)1, 2 Egland K.A.... Pastan I. (2002)
    3. The XAGE family of cancer/testis-associated genes: alignment and expression profile in normal tissues, melanoma lesions and Ewing's sarcoma. (PubMed id 11992404)1, 2 Zendman A.J.W....van Muijen G.N.P. (2002)
    4. XAGE-1, a new gene that is frequently expressed in Ewing's sarcoma. (PubMed id 10987281)1, 2 Liu X.F.... Pastan I. (2000)
    5. Heteroclitic serological response in esophageal and pr ostate cancer patients after NY-ESO-1 protein vaccination. (PubMed id 21413013)1 Kawada J....Nakayama E. (2012)
    6. NLS-dependent and insufficient nuclear localization of XAGE-1 splice variants. (PubMed id 21305256)1 Zhao R....Zhu N. (2011)
    7. [Association of XAGE-1 gene expression with clinical characteristics of lung cancer]. (PubMed id 20704819)1 Lai Q....Sun Y. (2010)
    8. Epigenetic modulation of cancer-germline antigen gene expression in tumorigenic human mesenchymal stem cells: implications for cance r therapy. (PubMed id 19498007)1 Gjerstorff M....Ditzel H. (2009)
    9. Prolonged survival of patients with lung adenocarcinoma expressing XAGE-1b and HLA class I antigens. (PubMed id 18752338)1 Kikuchi E....Nishimura M. (2008)
    10. A dendritic cell-based tumour vaccine for lung cancer: full-length XAGE-1b protein-pulsed dendritic cells induce specific cytotoxic T lymphocytes in vitro. (PubMed id 18803763)1 Zhou Q....Wu Y.L. (2008)

    External Searches for XAGE1B gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing XAGE1B gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 653220 HGNC: 25400 Ensembl:ENSG00000204382 euGenes: HUgn653220 ECgene: XAGE1B
    H-InvDB: XAGE1B

    Other Databases showing XAGE1B gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing XAGE1B gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for XAGE1B Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for XAGE1B gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for XAGE1B gene:
    Search GeneIP for patents involving XAGE1B

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    for XAGE1B gene

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    About This Section

     
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    von Willebrand factor
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