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Aliases &
Descriptions
for XAGE1B
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases |
|---|
| CT12.1 3 | | CT12.1b 1, 2 | | GAGED2 3 | | XAGE1A 3 |
| | | Descriptions |
|---|
| Cancer/testis antigen 12.1 3 | | Protein XAGE-1 3 | | X antigen family, member 1B 2 | | cancer/testis antigen family 12, member 1b 2 | | xage-1 p16 2 |
|
| |
Search outside databases for aliases for XAGE1B genePrevious GC identifers: GC0XU900702 GC0XM052272 GC0XP052530 |
Summaries
for XAGE1B(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for XAGE1B:
XAGE1B is 1 of 5 copies of the XAGE1 gene (see XAGE1D; MIM 300289) (Chen et al., 2006 [PubMed
16382448]).[supplied by OMIM]
UniProtKB/Swiss-Prot: GAGD2_HUMAN, Q9HD64Function: Unknown |
Genomic Location
for XAGE1B
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences)
About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xp11.22 Ensembl cytogenetic band: Xp11.22 HGNC cytogenetic band: Xp11.22XAGE1B Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome X GeneLoc Exon Structure GeneLoc location for GC0XM052561:
(about GC identifiers)
Start:
|
52,557,778 bp from pter |
End:
|
52,562,914 bp from pter |
Size:
|
5,137 bases |
Orientation:
|
minus strand |
1 alternative location:
| ChrX- 52,271,944-52,277,080 |
| Proteins
for XAGE1B
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: GAGD2_HUMAN, Q9HD64 (See
protein sequence)Recommended Name: G antigen family D member 2 Size: 160 amino acids; 17751 Da
Secondary accessions: A6NJ94 Q5JPP0 Q5JPP3 Q8WWG5 Q8WWG6 Q969J6Alternative splicing: 3 isoforms: Q9HD64-3 Q9HD64-2 Q9HD64-4 REFSEQ proteins (3 alternative transcripts):
NP_001091063.1 NP_001091064.1 NP_001091065.1
ENSEMBL proteins: ENSP00000364750 ENSP00000364752 ENSP00000382698 ENSP00000364745
Human Recombinant Proteins  Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for XAGE1B:
Assays for XAGE1B: | Protein
Domains/
Families
for XAGE1B(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9HD64
ProtoNet protein and cluster: Q9HD64 1 Blocks protein family: IPB008625 GAGE
UniProtKB/Swiss-Prot: GAGD2_HUMAN, Q9HD64Similarity: Belongs to the GAGE family | Gene Function
for XAGE1B
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Browse Origene for 29mer shRNA kit in GFP-retroviral vector
 Applied Biosystems Silencer® siRNAs for XAGE1B
 Sigma-Aldrich siRNA for XAGE1B
Browse shRNA at Sigma-Aldrich
Explore Sigma-Aldrich super-pooled esiRNAs
OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001097594
Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001097594
untagged cDNA clones in CMV expression vector (see all 3): NM_001097594
Primers:  Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
OriGene genome-wide validated SYBR primer pairs: NM_001097595
UniProtKB/Swiss-Prot: GAGD2_HUMAN, Q9HD64Function: Unknown | Pathways & Interactions
for XAGE1B
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
-- |
Drugs & Compounds
for XAGE1B(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for XAGE1B
|
Transcripts
for XAGE1B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene,
Expression Assays from Applied Biosystems)
About This Section
| Browse Origene for 29mer shRNA kit in GFP-retroviral vector
Sigma-Aldrich siRNA for XAGE1B
Browse shRNA at Sigma-Aldrich
Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer® siRNAs: NM_001097594 NM_001097595 NM_001097596 REFSEQ mRNAs for XAGE1B gene (3 alternative transcripts): NM_001097594.1 NM_001097595.1 NM_001097596.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001097594 NM_001097595 NM_001097596
OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001097594
Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001097594
untagged cDNA clones in CMV expression vector (see all 3): NM_001097594
GeneLoc Exon Structure
4 Ensembl transcripts including schematic representations: ENST00000375600
ENST00000375602
ENST00000399800
ENST00000375595
|
Expression
for XAGE1B
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| XAGE1B expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for XAGE1B
1 / 2 3 probe-sets matching XAGE1B gene Data from
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: --
UniProtKB/Swiss-Prot: GAGD2_HUMAN, Q9HD64Tissue specificity: In normal tissues, highly expressed in testis. Expressed also in many different
types of cancers: highly expressed in breast cancer, prostate cancer and many types of lung
cancers, including squamous cell carcinoma, small cell carcinoma, non-small cell carcinoma, and
adenocarcinoma, as well as in Ewing's cell lines, in some Ewing's sarcoma patient samples, and in
one of one alveolar rhabdomyosarcoma patient sample |
Orthologs
for XAGE1B
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
| ENSEMBL Gene Tree for XAGE1B | Paralogs
for XAGE1B(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| Paralogs for XAGE1B gene
- XAGE1C1 2 XAGE1E2 XAGE1D2 XAGE1A2
|
SNPs/Variants
for XAGE1B(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| -- |
Disorders & Mutations
for XAGE1B
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 300743
|
Medical News
for XAGE1B(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for XAGE1B (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 9 PubMed articles for XAGE1B gene: |
Search for XAGE1B
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing XAGE1B
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing XAGE1B
(According to HUGE)
About This Section
| -- |
Specialized Databases showing XAGE1B(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| About This Section
| --
| Services
for XAGE1B(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section
| 
Products for XAGE1B:
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