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Aliases for WWTR1-AS1 Gene

Subcategory (RNA class) for WWTR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for WWTR1-AS1 Gene

  • WWTR1 Antisense RNA 1 2 3 5
  • WWTR1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for WWTR1-AS1 Gene

Previous GeneCards Identifiers for WWTR1-AS1 Gene

  • GC03U901794
  • GC03P149375

Summaries for WWTR1-AS1 Gene

GeneCards Summary for WWTR1-AS1 Gene

WWTR1-AS1 (WWTR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WWTR1-AS1 Gene

Genomics for WWTR1-AS1 Gene

Regulatory Elements for WWTR1-AS1 Gene

Enhancers for WWTR1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G149613 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -38.8 -38827 8.4 FOXA2 SIN3A FEZF1 ZNF48 YY1 TCF12 GTF3C2 GATA2 FOS DEK WWTR1 WWTR1-AS1 EIF2A COMMD2 TM4SF18 TM4SF1 GC03P149613 WWTR1-IT1
GH03G149506 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -149.6 -149601 2.8 FOXA2 PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 FOS SP5 JUNB COMMD2 WWTR1 TM4SF4 WWTR1-AS1 RNF13 LOC100421817 RNU6-1098P
GH03G149571 1.6 Ensembl ENCODE dbSUPER 11.6 -72.5 -72537 26.4 HDGF PKNOX1 FOXA2 WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 CBX5 WWTR1 COMMD2 WWTR1-AS1 RNU6-1098P GC03P149613
GH03G149601 1.5 Ensembl ENCODE dbSUPER 11.5 -50.1 -50052 11.0 HDGF HNRNPUL1 PKNOX1 FOXA2 WRNIP1 ARID4B YY1 GATA2 CBX5 ZNF143 WWTR1-AS1 WWTR1 UBQLN4P1 GC03P149613 RNU6-1098P
GH03G149552 1.5 Ensembl ENCODE dbSUPER 10.7 -102.2 -102231 4.5 MLX SIN3A ARID4B YY1 SLC30A9 GATA2 ZNF143 FOS DEK ZHX2 RNU6-1098P WWTR1-AS1 WWTR1 TM4SF1 GC03P149613
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WWTR1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for WWTR1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000160032 -20 4001 FOXA2 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF143 FOS DEK ZNF263

Genomic Location for WWTR1-AS1 Gene

Chromosome:
3
Start:
149,657,020 bp from pter
End:
149,661,364 bp from pter
Size:
4,345 bases
Orientation:
Plus strand

Genomic View for WWTR1-AS1 Gene

Genes around WWTR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WWTR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WWTR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WWTR1-AS1 Gene

Proteins for WWTR1-AS1 Gene

Post-translational modifications for WWTR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WWTR1-AS1 Gene

Domains & Families for WWTR1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WWTR1-AS1 Gene

Function for WWTR1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WWTR1-AS1 Gene

Localization for WWTR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for WWTR1-AS1 Gene

Pathways & Interactions for WWTR1-AS1 Gene

SuperPathways for WWTR1-AS1 Gene

No Data Available

Interacting Proteins for WWTR1-AS1 Gene

Gene Ontology (GO) - Biological Process for WWTR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WWTR1-AS1 Gene

Drugs & Compounds for WWTR1-AS1 Gene

No Compound Related Data Available

Transcripts for WWTR1-AS1 Gene

mRNA/cDNA for WWTR1-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for WWTR1-AS1 Gene

WWTR1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WWTR1-AS1 Gene

No ASD Table

Relevant External Links for WWTR1-AS1 Gene

GeneLoc Exon Structure for
WWTR1-AS1
ECgene alternative splicing isoforms for
WWTR1-AS1

Expression for WWTR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WWTR1-AS1 Gene

SOURCE GeneReport for Unigene cluster for WWTR1-AS1 Gene:

Hs.680428
genes like me logo Genes that share expression patterns with WWTR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WWTR1-AS1 Gene

Orthologs for WWTR1-AS1 Gene

Evolution for WWTR1-AS1 Gene

ENSEMBL:
Gene Tree for WWTR1-AS1 (if available)
TreeFam:
Gene Tree for WWTR1-AS1 (if available)

No data available for Orthologs for WWTR1-AS1 Gene

Paralogs for WWTR1-AS1 Gene

No data available for Paralogs for WWTR1-AS1 Gene

Variants for WWTR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for WWTR1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000043886 -- 149,660,857(+) TTAGC(A/G)TTCCT intron-variant
rs1000960963 -- 149,657,071(+) CCCCA(G/T)CCAGT upstream-variant-2KB, reference, missense
rs1001055931 -- 149,656,814(+) ACACA(A/C)GAACA intron-variant, upstream-variant-2KB
rs1001155408 -- 149,658,539(+) CCGGC(G/T)CGGGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001340933 -- 149,659,369(+) CTCTT(G/T)TCCCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for WWTR1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3307369 CNV mobile element insertion 20981092
esv34142 CNV loss 18971310
esv3417310 CNV insertion 20981092
nsv829754 CNV gain 17160897

Relevant External Links for WWTR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WWTR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WWTR1-AS1 Gene

Disorders for WWTR1-AS1 Gene

Relevant External Links for WWTR1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WWTR1-AS1

No disorders were found for WWTR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WWTR1-AS1 Gene

Publications for WWTR1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for WWTR1-AS1 Gene

Sources for WWTR1-AS1 Gene

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