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Aliases for WWTR1-AS1 Gene

Subcategory (RNA class) for WWTR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for WWTR1-AS1 Gene

  • WWTR1 Antisense RNA 1 2 3 5
  • WWTR1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for WWTR1-AS1 Gene

Previous GeneCards Identifiers for WWTR1-AS1 Gene

  • GC03U901794
  • GC03P149375

Summaries for WWTR1-AS1 Gene

GeneCards Summary for WWTR1-AS1 Gene

WWTR1-AS1 (WWTR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WWTR1-AS1 Gene

Genomics for WWTR1-AS1 Gene

Regulatory Elements for WWTR1-AS1 Gene

Enhancers for WWTR1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F149751 0.2 ENCODE 14.9 +95.3 95283 1.9 PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 WWTR1-AS1 TM4SF1-AS1 WWTR1-IT1 EIF2A COMMD2 WWTR1
GH03F150543 1.1 ENCODE 14.8 +889.3 889251 4.7 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 EIF2A WWTR1-AS1 WWTR1-IT1 SERP1 SELENOT GC03M150475
GH03F150406 0.2 ENCODE 14.8 +754.3 754309 9.6 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 EIF2A RPL32P9 LOC730021 ENSG00000241929 WWTR1-AS1 WWTR1-IT1 NPM1P29 GC03M150408 GC03P150463
GH03F149365 0.2 ENCODE 14.4 -284.5 -284498 14.3 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 WWTR1-AS1 COMMD2 TM4SF1 TM4SF18 TM4SF1-AS1 RPS25P5
GH03F149085 1.1 ENCODE 14.4 -570.9 -570922 2.2 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 HLTF WWTR1-AS1 COMMD2 HLTF-AS1 GYG1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around WWTR1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for WWTR1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001376479 -520 5401 ARID4B SIN3A DMAP1 YY1 ZNF143 FOS DEK ZNF263 PAF1 SP3

Genomic Location for WWTR1-AS1 Gene

Chromosome:
3
Start:
149,657,020 bp from pter
End:
149,661,364 bp from pter
Size:
4,345 bases
Orientation:
Plus strand

Genomic View for WWTR1-AS1 Gene

Genes around WWTR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WWTR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WWTR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WWTR1-AS1 Gene

Proteins for WWTR1-AS1 Gene

Post-translational modifications for WWTR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WWTR1-AS1 Gene

Domains & Families for WWTR1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WWTR1-AS1 Gene

Function for WWTR1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WWTR1-AS1 Gene

Localization for WWTR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for WWTR1-AS1 Gene

Pathways & Interactions for WWTR1-AS1 Gene

SuperPathways for WWTR1-AS1 Gene

No Data Available

Interacting Proteins for WWTR1-AS1 Gene

Gene Ontology (GO) - Biological Process for WWTR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WWTR1-AS1 Gene

Transcripts for WWTR1-AS1 Gene

mRNA/cDNA for WWTR1-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for WWTR1-AS1 Gene

WWTR1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WWTR1-AS1 Gene

No ASD Table

Relevant External Links for WWTR1-AS1 Gene

GeneLoc Exon Structure for
WWTR1-AS1
ECgene alternative splicing isoforms for
WWTR1-AS1

Expression for WWTR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WWTR1-AS1 Gene

SOURCE GeneReport for Unigene cluster for WWTR1-AS1 Gene:

Hs.680428
genes like me logo Genes that share expression patterns with WWTR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for WWTR1-AS1 Gene

Orthologs for WWTR1-AS1 Gene

Evolution for WWTR1-AS1 Gene

ENSEMBL:
Gene Tree for WWTR1-AS1 (if available)
TreeFam:
Gene Tree for WWTR1-AS1 (if available)

No data available for Orthologs for WWTR1-AS1 Gene

Paralogs for WWTR1-AS1 Gene

No data available for Paralogs for WWTR1-AS1 Gene

Variants for WWTR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for WWTR1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1055153 -- 149,657,086(+) GCCCC(G/T)GGTGG upstream-variant-2KB, reference, missense
rs111720298 -- 149,658,660(+) ACAGA(A/C)GGTGC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111732844 -- 149,658,449(+) GCCCT(C/T)CCCTG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112163811 -- 149,659,738(+) TTTGC(C/T)TCGGA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112179680 -- 149,658,346(+) GCCTG(C/T)TTCAT intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for WWTR1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3307369 CNV mobile element insertion 20981092
esv34142 CNV loss 18971310
esv3417310 CNV insertion 20981092
nsv829754 CNV gain 17160897

Relevant External Links for WWTR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WWTR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WWTR1-AS1 Gene

Disorders for WWTR1-AS1 Gene

Relevant External Links for WWTR1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WWTR1-AS1

No disorders were found for WWTR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WWTR1-AS1 Gene

Publications for WWTR1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for WWTR1-AS1 Gene

Sources for WWTR1-AS1 Gene

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