Free for academic non-profit institutions. Other users need a Commercial license

Aliases for WWTR1-AS1 Gene

Subcategory (RNA class) for WWTR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for WWTR1-AS1 Gene

  • WWTR1 Antisense RNA 1 2 3 5
  • WWTR1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for WWTR1-AS1 Gene

Previous GeneCards Identifiers for WWTR1-AS1 Gene

  • GC03U901794
  • GC03P149375

Summaries for WWTR1-AS1 Gene

GeneCards Summary for WWTR1-AS1 Gene

WWTR1-AS1 (WWTR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for WWTR1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WWTR1-AS1 Gene

Genomics for WWTR1-AS1 Gene

GeneHancer (GH) Regulatory Elements for WWTR1-AS1 Gene

Promoters and enhancers for WWTR1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I149652 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 560.1 -0.2 -225 7.8 FOXA2 SMAD1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF213 ZNF143 SP3 WWTR1-AS1 WWTR1 COMMD2 WWTR1-IT1
GH03I149613 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -38.8 -38827 8.4 ELF3 FOXA2 FEZF1 ZNF48 RARA YY1 GTF3C2 TCF12 ZNF366 SCRT2 WWTR1 WWTR1-AS1 COMMD2 TM4SF18 TM4SF1 GC03P149613 WWTR1-IT1
GH03I149571 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.6 -72.5 -72536 26.4 HDGF PKNOX1 SMAD1 SIN3A FEZF1 ZNF2 IRF4 ZNF207 ZNF143 FOS WWTR1 WWTR1-AS1 RNU6-1098P GC03P149613
GH03I149601 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.5 -50.1 -50052 11 HDGF PKNOX1 FOXA2 SMAD1 ARID4B IRF4 YY1 ZNF207 ZNF143 ATF7 WWTR1-AS1 WWTR1 UBQLN4P1 GC03P149613 RNU6-1098P
GH03I149506 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -149.6 -149601 2.8 ESRRA FOXA2 JUN MAX EBF1 RARA ETS1 ZNF335 CTBP1 GATA3 COMMD2 WWTR1 TM4SF4 WWTR1-AS1 RNF13 LOC100421817 RNU6-1098P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around WWTR1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for WWTR1-AS1 Gene

Genomic Locations for WWTR1-AS1 Gene
chr3:149,657,020-149,661,364
(GRCh38/hg38)
Size:
4,345 bases
Orientation:
Plus strand
chr3:149,374,807-149,379,151
(GRCh37/hg19)

Genomic View for WWTR1-AS1 Gene

Genes around WWTR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WWTR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WWTR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WWTR1-AS1 Gene

Proteins for WWTR1-AS1 Gene

Post-translational modifications for WWTR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WWTR1-AS1 Gene

Domains & Families for WWTR1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WWTR1-AS1 Gene

Function for WWTR1-AS1 Gene

Phenotypes From GWAS Catalog for WWTR1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WWTR1-AS1 Gene

Localization for WWTR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WWTR1-AS1 Gene

Pathways & Interactions for WWTR1-AS1 Gene

SuperPathways for WWTR1-AS1 Gene

No Data Available

Interacting Proteins for WWTR1-AS1 Gene

Gene Ontology (GO) - Biological Process for WWTR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WWTR1-AS1 Gene

Drugs & Compounds for WWTR1-AS1 Gene

No Compound Related Data Available

Transcripts for WWTR1-AS1 Gene

mRNA/cDNA for WWTR1-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for WWTR1-AS1 Gene

WWTR1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for WWTR1-AS1 Gene

No ASD Table

Relevant External Links for WWTR1-AS1 Gene

GeneLoc Exon Structure for
WWTR1-AS1
ECgene alternative splicing isoforms for
WWTR1-AS1

Expression for WWTR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WWTR1-AS1 Gene

SOURCE GeneReport for Unigene cluster for WWTR1-AS1 Gene:

Hs.680428
genes like me logo Genes that share expression patterns with WWTR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WWTR1-AS1 Gene

Orthologs for WWTR1-AS1 Gene

Evolution for WWTR1-AS1 Gene

ENSEMBL:
Gene Tree for WWTR1-AS1 (if available)
TreeFam:
Gene Tree for WWTR1-AS1 (if available)

No data available for Orthologs for WWTR1-AS1 Gene

Paralogs for WWTR1-AS1 Gene

No data available for Paralogs for WWTR1-AS1 Gene

Variants for WWTR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for WWTR1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000043886 -- 149,660,857(+) A/G intron_variant
rs1000960963 -- 149,657,071(+) G/T upstream_transcript_variant
rs1001055931 -- 149,656,814(+) C/A upstream_transcript_variant
rs1001155408 -- 149,658,539(+) G/T non_coding_transcript_variant
rs1001340933 -- 149,659,369(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for WWTR1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3307369 CNV mobile element insertion 20981092
esv34142 CNV loss 18971310
esv3417310 CNV insertion 20981092
nsv829754 CNV gain 17160897

Additional Variant Information for WWTR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WWTR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WWTR1-AS1 Gene

Disorders for WWTR1-AS1 Gene

Additional Disease Information for WWTR1-AS1

No disorders were found for WWTR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WWTR1-AS1 Gene

Publications for WWTR1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for WWTR1-AS1 Gene

Sources for WWTR1-AS1 Gene

Content
Loading form....