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Aliases for WTH3DI Gene

Aliases for WTH3DI Gene

  • RAB6C-Like 3 3 5

External Ids for WTH3DI Gene

Previous GeneCards Identifiers for WTH3DI Gene

  • GC02M132121

Summaries for WTH3DI Gene

GeneCards Summary for WTH3DI Gene

WTH3DI (RAB6C-Like) is a Protein Coding gene. An important paralog of this gene is RAB6C.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WTH3DI Gene

Genomics for WTH3DI Gene

Regulatory Elements for WTH3DI Gene

Enhancers for WTH3DI Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around WTH3DI on UCSC Golden Path with GeneCards custom track

Promoters for WTH3DI Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for WTH3DI Gene

Chromosome:
2
Start:
131,360,492 bp from pter
End:
131,364,158 bp from pter
Size:
3,667 bases
Orientation:
Minus strand

Genomic View for WTH3DI Gene

Genes around WTH3DI on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WTH3DI Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WTH3DI Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WTH3DI Gene

Proteins for WTH3DI Gene

  • Protein details for WTH3DI Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q53S08
    Recommended name:
    Putative uncharacterized protein RAB6C
    Protein Accession:
    Q53S08

    Protein attributes for WTH3DI Gene

    Size:
    254 amino acids
    Molecular mass:
    28242 Da
    Quaternary structure:
    No Data Available

neXtProt entry for WTH3DI Gene

Post-translational modifications for WTH3DI Gene

No Post-translational modifications

Other Protein References for WTH3DI Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for WTH3DI Gene

Domains & Families for WTH3DI Gene

Protein Domains for WTH3DI Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with WTH3DI: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WTH3DI Gene

Function for WTH3DI Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WTH3DI Gene

Localization for WTH3DI Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for WTH3DI Gene

Pathways & Interactions for WTH3DI Gene

SuperPathways for WTH3DI Gene

No Data Available

Interacting Proteins for WTH3DI Gene

Gene Ontology (GO) - Biological Process for WTH3DI Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WTH3DI Gene

Drugs & Compounds for WTH3DI Gene

No Compound Related Data Available

Transcripts for WTH3DI Gene

mRNA/cDNA for WTH3DI Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for WTH3DI Gene

RAB6C-like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for WTH3DI Gene

No ASD Table

Relevant External Links for WTH3DI Gene

GeneLoc Exon Structure for
WTH3DI

Expression for WTH3DI Gene

mRNA expression in normal human tissues for WTH3DI Gene

mRNA differential expression in normal tissues according to GTEx for WTH3DI Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x4.9), Brain - Anterior cingulate cortex (BA24) (x4.5), and Brain - Hypothalamus (x4.4).

SOURCE GeneReport for Unigene cluster for WTH3DI Gene:

Hs.645670
genes like me logo Genes that share expression patterns with WTH3DI: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for WTH3DI Gene

Orthologs for WTH3DI Gene

Evolution for WTH3DI Gene

ENSEMBL:
Gene Tree for WTH3DI (if available)
TreeFam:
Gene Tree for WTH3DI (if available)

No data available for Orthologs for WTH3DI Gene

Paralogs for WTH3DI Gene

Paralogs for WTH3DI Gene

genes like me logo Genes that share paralogs with WTH3DI: view

Variants for WTH3DI Gene

Sequence variations from dbSNP and Humsavar for WTH3DI Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs6704669 -- 131,361,077(+) AGTCA(C/G)AACTT utr-variant-3-prime
rs6704678 -- 131,361,114(+) TGCCA(C/T)AGTGA utr-variant-3-prime
rs6710474 -- 131,361,026(+) TAAAA(A/G)GAATC utr-variant-3-prime
rs6714228 -- 131,361,214(+) ATAAC(A/T)CCATC utr-variant-3-prime
rs12691937 -- 131,364,366(+) CCAGT(C/T)TCTGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for WTH3DI Gene

Variant ID Type Subtype PubMed ID
dgv2032n106 OTHER inversion 24896259
dgv4075n100 CNV gain 25217958
dgv4077n100 CNV gain 25217958
dgv4078n100 CNV gain 25217958
dgv4079n100 CNV loss 25217958
dgv4080n100 CNV gain 25217958
dgv476n27 CNV loss 19166990
dgv7084n54 CNV loss 21841781
esv2670824 CNV deletion 23128226
esv27354 CNV gain+loss 19812545
esv2759092 CNV gain+loss 17122850
esv2760576 CNV gain+loss 21179565
esv34412 CNV gain 17911159
esv34704 CNV gain 17911159
esv3575300 CNV gain 25503493
esv3584079 CNV loss 25503493
esv3592474 CNV loss 21293372
esv3592475 CNV gain 21293372
esv3893359 CNV gain+loss 25118596
nsv1004646 CNV loss 25217958
nsv1014682 CNV loss 25217958
nsv1014723 CNV loss 25217958
nsv10180 CNV loss 18304495
nsv1147463 OTHER inversion 26484159
nsv428404 CNV loss 18775914
nsv459396 CNV gain 19166990
nsv459407 CNV loss 19166990
nsv470486 CNV loss 18288195
nsv520930 CNV gain 19592680
nsv522712 CNV gain 19592680
nsv524021 CNV loss 19592680
nsv583140 CNV gain 21841781
nsv583142 CNV loss 21841781
nsv583143 CNV gain+loss 21841781
nsv7327 OTHER inversion 18451855
nsv818082 CNV gain 17921354
nsv979122 CNV duplication 23825009
nsv998189 CNV loss 25217958
nsv998424 CNV loss 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for WTH3DI Gene

Disorders for WTH3DI Gene

No disorders were found for WTH3DI Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for WTH3DI Gene

Publications for WTH3DI Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 65
  2. Screening for target Rabs of TBC (Tre-2/Bub2/Cdc16) domain-containing proteins based on their Rab-binding activity. (PMID: 16923123) Itoh T. … Fukuda M. (Genes Cells 2006) 3 65
  3. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 65

Products for WTH3DI Gene

Sources for WTH3DI Gene

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