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Aliases for WTAPP1 Gene

Aliases for WTAPP1 Gene

  • Wilms Tumor 1 Associated Protein Pseudogene 1 2 3 5

External Ids for WTAPP1 Gene

Previous GeneCards Identifiers for WTAPP1 Gene

  • GC11P102618

Summaries for WTAPP1 Gene

GeneCards Summary for WTAPP1 Gene

WTAPP1 (Wilms Tumor 1 Associated Protein Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WTAPP1 Gene

Genomics for WTAPP1 Gene

Regulatory Elements for WTAPP1 Gene

Enhancers for WTAPP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G102751 0.8 ENCODE 0.7 +4.9 4917 0.2 ELF3 SOX13 TFAP4 MLX CEBPG ZNF644 RARA NR2F6 HOMEZ GATAD2A WTAPP1 ENSG00000225678
GH11G102727 1.3 FANTOM5 Ensembl ENCODE 0.4 -18.8 -18842 1.5 SOX13 HDGF PKNOX1 JUN BACH1 FOSL1 ARID3A ZNF316 GATA2 FOSL2 MMP27 MMP10 MMP1 MMP3 RNU7-159P BIRC2 TMEM123 BIRC3 MMP8 WTAPP1
GH11G102729 1 Ensembl ENCODE 0.4 -16.6 -16631 1.9 SOX13 FOXA2 JUN BACH1 TEAD3 RARA FOSL1 ZNF366 RELB FOS MMP27 MMP10 MMP1 MMP3 RNU7-159P MMP8 WTAPP1
GH11G102733 0.7 ENCODE 0.4 -13.5 -13524 0.2 SCRT1 CTCF ZNF654 PKNOX1 TRIM22 REST RAD21 KLF16 TARDBP SCRT2 MMP10 MMP27 MMP1 MMP3 RNU7-159P MMP8 WTAPP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WTAPP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for WTAPP1 Gene

Chromosome:
11
Start:
102,746,968 bp from pter
End:
102,836,766 bp from pter
Size:
89,799 bases
Orientation:
Plus strand

Genomic View for WTAPP1 Gene

Genes around WTAPP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WTAPP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WTAPP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WTAPP1 Gene

Proteins for WTAPP1 Gene

Post-translational modifications for WTAPP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WTAPP1 Gene

Domains & Families for WTAPP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WTAPP1 Gene

Function for WTAPP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WTAPP1 Gene

Localization for WTAPP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for WTAPP1 Gene

Pathways & Interactions for WTAPP1 Gene

SuperPathways for WTAPP1 Gene

No Data Available

Interacting Proteins for WTAPP1 Gene

Gene Ontology (GO) - Biological Process for WTAPP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WTAPP1 Gene

Drugs & Compounds for WTAPP1 Gene

No Compound Related Data Available

Transcripts for WTAPP1 Gene

mRNA/cDNA for WTAPP1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for WTAPP1 Gene

Wilms tumor 1 associated protein pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WTAPP1 Gene

No ASD Table

Relevant External Links for WTAPP1 Gene

GeneLoc Exon Structure for
WTAPP1
ECgene alternative splicing isoforms for
WTAPP1

Expression for WTAPP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WTAPP1 Gene

mRNA differential expression in normal tissues according to GTEx for WTAPP1 Gene

This gene is overexpressed in Minor Salivary Gland (x14.0) and Testis (x5.7).

NURSA nuclear receptor signaling pathways regulating expression of WTAPP1 Gene:

WTAPP1

SOURCE GeneReport for Unigene cluster for WTAPP1 Gene:

Hs.661772
genes like me logo Genes that share expression patterns with WTAPP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WTAPP1 Gene

Orthologs for WTAPP1 Gene

Evolution for WTAPP1 Gene

ENSEMBL:
Gene Tree for WTAPP1 (if available)
TreeFam:
Gene Tree for WTAPP1 (if available)

No data available for Orthologs for WTAPP1 Gene

Paralogs for WTAPP1 Gene

No data available for Paralogs for WTAPP1 Gene

Variants for WTAPP1 Gene

Sequence variations from dbSNP and Humsavar for WTAPP1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000005925 -- 102,807,701(+) GGGAT(A/G)CCAAG intron-variant
rs1000064795 -- 102,807,399(+) CACAG(C/T)ATGCG intron-variant
rs1000101885 -- 102,786,615(+) TAAAC(A/C)CTCCT intron-variant
rs1000143097 -- 102,823,888(+) CATGG(A/G)GGCAG intron-variant
rs1000237507 -- 102,807,339(+) CCAAG(A/T)TGTGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WTAPP1 Gene

Variant ID Type Subtype PubMed ID
esv1010986 CNV deletion 20482838
esv1277207 CNV deletion 17803354
esv2745001 CNV deletion 23290073
esv2745002 CNV deletion 23290073

Relevant External Links for WTAPP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WTAPP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WTAPP1 Gene

Disorders for WTAPP1 Gene

Relevant External Links for WTAPP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WTAPP1

No disorders were found for WTAPP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WTAPP1 Gene

Publications for WTAPP1 Gene

  1. Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation. (PMID: 25340798) Kauwe J.S. … Goate A.M. (PLoS Genet. 2014) 3 64
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 64
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud P.J. … . (Am. J. Hum. Genet. 2009) 3 64
  4. Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels. (PMID: 20031604) Cheng Y.C. … Pollin T.I. (Circ Cardiovasc Genet 2009) 3 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for WTAPP1 Gene

Sources for WTAPP1 Gene

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