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Aliases for WHSC1L2P Gene

Aliases for WHSC1L2P Gene

  • Wolf-Hirschhorn Syndrome Candidate 1-Like 2, Pseudogene 2 3
  • Wolf-Hirschhorn Syndrome Candidate 1-Like 1 Pseudogene 2 3
  • AC055813.1 5
  • HsT36289 3
  • WHSC1L1P 3
  • NSD4P 3

External Ids for WHSC1L2P Gene

Previous HGNC Symbols for WHSC1L2P Gene

  • WHSC1L1P

Previous GeneCards Identifiers for WHSC1L2P Gene

  • GC17U990246
  • GC17M039152
  • GC17M041795

Summaries for WHSC1L2P Gene

GeneCards Summary for WHSC1L2P Gene

WHSC1L2P (Wolf-Hirschhorn Syndrome Candidate 1-Like 2, Pseudogene) is a Pseudogene.

Additional gene information for WHSC1L2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WHSC1L2P Gene

Genomics for WHSC1L2P Gene

Regulatory Elements for WHSC1L2P Gene

Enhancers for WHSC1L2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H043719 1.3 FANTOM5 ENCODE 0.7 -0.3 -286 2 HDGF RB1 ZFP64 SIN3A DMAP1 ETS1 ZNF143 ZNF207 IKZF2 THAP11 TMEM106A SOST MEOX1 LOC105371786 DUSP3 DHX8 TMUB2 WHSC1L2P GC17P043726 PIR44007
GH17H043724 0.9 ENCODE 0.7 -3.6 -3550 0 ZSCAN4 INSM2 FEZF1 ZEB1 RFX5 GLIS2 ZNF366 SMARCC2 RCOR1 ZNF391 ASB16-AS1 SOST TMUB2 DHX8 UBTF MEOX1 ENSG00000267340 C17orf105 WHSC1L2P PIR44007
GH17H043713 1.1 Ensembl ENCODE 0.4 +6.4 6426 1 CTCF MXI1 ZNF146 SUZ12 ZMYM3 ZIC2 E2F1 ZFHX2 GLIS2 POLR2A SOST LOC105371786 WHSC1L2P
GH17H043677 1.2 Ensembl ENCODE 0.3 +42.4 42351 0 ARID4B ETS1 SLC30A9 GLIS2 ELK1 ZNF143 ZHX2 ZC3H11A REST MIER2 LOC105371786 WHSC1L2P
GH17H043700 0.8 ENCODE 0.4 +19.2 19198 1 BACH1 BMI1 GTF3C2 ZNF121 POLR2A FOXK2 ZNF143 FOS ATF7 ZSCAN29 DHX8 HMGN1P29 SOST ASB16-AS1 VPS25 TMUB2 UBTF PSME3 LINC00910 MEOX1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WHSC1L2P on UCSC Golden Path with GeneCards custom track

Genomic Location for WHSC1L2P Gene

Chromosome:
17
Start:
43,718,314 bp from pter
End:
43,720,436 bp from pter
Size:
2,123 bases
Orientation:
Minus strand

Genomic View for WHSC1L2P Gene

Genes around WHSC1L2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WHSC1L2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WHSC1L2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WHSC1L2P Gene

Proteins for WHSC1L2P Gene

Post-translational modifications for WHSC1L2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for WHSC1L2P Gene

Domains & Families for WHSC1L2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WHSC1L2P Gene

Function for WHSC1L2P Gene

Phenotypes From GWAS Catalog for WHSC1L2P Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for WHSC1L2P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WHSC1L2P Gene

Localization for WHSC1L2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for WHSC1L2P Gene

Pathways & Interactions for WHSC1L2P Gene

SuperPathways for WHSC1L2P Gene

No Data Available

Interacting Proteins for WHSC1L2P Gene

Gene Ontology (GO) - Biological Process for WHSC1L2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WHSC1L2P Gene

Drugs & Compounds for WHSC1L2P Gene

No Compound Related Data Available

Transcripts for WHSC1L2P Gene

mRNA/cDNA for WHSC1L2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for WHSC1L2P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for WHSC1L2P Gene

No ASD Table

Relevant External Links for WHSC1L2P Gene

GeneLoc Exon Structure for
WHSC1L2P
ECgene alternative splicing isoforms for
WHSC1L2P

Expression for WHSC1L2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WHSC1L2P Gene

mRNA differential expression in normal tissues according to GTEx for WHSC1L2P Gene

This gene is overexpressed in Testis (x12.2).

NURSA nuclear receptor signaling pathways regulating expression of WHSC1L2P Gene:

WHSC1L2P
genes like me logo Genes that share expression patterns with WHSC1L2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WHSC1L2P Gene

Orthologs for WHSC1L2P Gene

Evolution for WHSC1L2P Gene

ENSEMBL:
Gene Tree for WHSC1L2P (if available)
TreeFam:
Gene Tree for WHSC1L2P (if available)

No data available for Orthologs for WHSC1L2P Gene

Paralogs for WHSC1L2P Gene

No data available for Paralogs for WHSC1L2P Gene

Variants for WHSC1L2P Gene

Relevant External Links for WHSC1L2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WHSC1L2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for WHSC1L2P Gene

Disorders for WHSC1L2P Gene

Relevant External Links for WHSC1L2P

Genetic Association Database (GAD)
WHSC1L2P

No disorders were found for WHSC1L2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WHSC1L2P Gene

Publications for WHSC1L2P Gene

  1. WHSC1L1, on human chromosome 8p11.2, closely resembles WHSC1 and maps to a duplicated region shared with 4p16.3. (PMID: 11549311) Stec I … den Dunnen JT (Genomics 2001) 2 3 60
  2. New sequence variants associated with bone mineral density. (PMID: 19079262) Styrkarsdottir U … Stefansson K (Nature genetics 2009) 45 60

Products for WHSC1L2P Gene

Sources for WHSC1L2P Gene

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