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Aliases for WHAMMP3 Gene

Aliases for WHAMMP3 Gene

  • WAS Protein Homolog Associated With Actin, Golgi Membranes And Microtubules Pseudogene 3 2 3 4 5
  • WAS Protein Homolog Associated With Actin, Golgi Membranes And Microtubules-Like 1 (Pseudogene) 2 3
  • WAS Protein Homology Region 2 Domain-Containing Protein 1-Like Protein 1 3 4
  • WAS Protein Homology Region 2 Domain Containing 1-Like 1 2 3
  • WH2 Domain-Containing Protein 1-Like Protein 1 3 4
  • WHDC1-Like Protein 1 3 4
  • WHAMML1 3 4
  • WHDC1L1 3 4
  • Putative WASP Homolog-Associated Protein With Actin, Membranes And Microtubules-Like Protein 1 3
  • WAS Protein Homolog Associated With Actin, Golgi Membranes And Microtubules-Like 1 2
  • WAS Protein Homology Region 2 Domain Containing 1 Pseudogene 3

External Ids for WHAMMP3 Gene

Previous HGNC Symbols for WHAMMP3 Gene

  • WHDC1L1
  • WHAMML1

Previous GeneCards Identifiers for WHAMMP3 Gene

  • GC15M023188

Summaries for WHAMMP3 Gene

GeneCards Summary for WHAMMP3 Gene

WHAMMP3 (WAS Protein Homolog Associated With Actin, Golgi Membranes And Microtubules Pseudogene 3) is a Pseudogene.

Additional gene information for WHAMMP3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WHAMMP3 Gene

Genomics for WHAMMP3 Gene

Regulatory Elements for WHAMMP3 Gene

Enhancers for WHAMMP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H022664 0.9 ENCODE 0.7 +0.9 874 2 ELF3 FOXA2 RB1 ARID4B SIN3A RARA SCRT2 SMARCA5 PPARG ZNF592 WHAMMP3 LOC101269108
GH15H022666 0.4 Ensembl 0.7 +2.3 2342 0 ZNF202 WHAMMP3 LOC101269108
GH15H022678 0.2 Ensembl 0.4 +13.7 13743 0 WHAMMP3 LOC101269108
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WHAMMP3 on UCSC Golden Path with GeneCards custom track

Promoters for WHAMMP3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000073988 641 2400 ELF3 FOXA2 RB1 ARID4B SIN3A RARA SCRT2 SMARCA5 PPARG ZNF592

Genomic Location for WHAMMP3 Gene

Chromosome:
15
Start:
22,664,359 bp from pter
End:
22,686,213 bp from pter
Size:
21,855 bases
Orientation:
Plus strand

Genomic View for WHAMMP3 Gene

Genes around WHAMMP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WHAMMP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WHAMMP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WHAMMP3 Gene

Proteins for WHAMMP3 Gene

  • Protein details for WHAMMP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q1A5X7-WHAL1_HUMAN
    Recommended name:
    Putative WASP homolog-associated protein with actin, membranes and microtubules-like protein 1
    Protein Accession:
    Q1A5X7
    Secondary Accessions:
    • Q1A5X8
    • Q52M16
    • Q52M18

    Protein attributes for WHAMMP3 Gene

    Size:
    153 amino acids
    Molecular mass:
    18091 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for WHAMMP3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for WHAMMP3 Gene

Post-translational modifications for WHAMMP3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for WHAMMP3 Gene

Domains & Families for WHAMMP3 Gene

Protein Domains for WHAMMP3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for WHAMMP3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with WHAMMP3: view

No data available for Gene Families and UniProtKB/Swiss-Prot for WHAMMP3 Gene

Function for WHAMMP3 Gene

Gene Ontology (GO) - Molecular Function for WHAMMP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0017049 GTP-Rho binding IBA --
GO:0071933 Arp2/3 complex binding IBA --
genes like me logo Genes that share ontologies with WHAMMP3: view

Animal Model Products

CRISPR Products

miRNA for WHAMMP3 Gene

miRTarBase miRNAs that target WHAMMP3

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for WHAMMP3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for WHAMMP3 Gene

Localization for WHAMMP3 Gene

Gene Ontology (GO) - Cellular Components for WHAMMP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane IBA --
genes like me logo Genes that share ontologies with WHAMMP3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for WHAMMP3 Gene

Pathways & Interactions for WHAMMP3 Gene

SuperPathways for WHAMMP3 Gene

No Data Available

Interacting Proteins for WHAMMP3 Gene

Gene Ontology (GO) - Biological Process for WHAMMP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006888 ER to Golgi vesicle-mediated transport IBA --
GO:0007050 cell cycle arrest IBA --
GO:0034314 Arp2/3 complex-mediated actin nucleation IBA --
genes like me logo Genes that share ontologies with WHAMMP3: view

No data available for Pathways by source and SIGNOR curated interactions for WHAMMP3 Gene

Drugs & Compounds for WHAMMP3 Gene

No Compound Related Data Available

Transcripts for WHAMMP3 Gene

Unigene Clusters for WHAMMP3 Gene

WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for WHAMMP3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for WHAMMP3 Gene

No ASD Table

Relevant External Links for WHAMMP3 Gene

GeneLoc Exon Structure for
WHAMMP3
ECgene alternative splicing isoforms for
WHAMMP3

Expression for WHAMMP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for WHAMMP3 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for WHAMMP3 Gene



Protein tissue co-expression partners for WHAMMP3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of WHAMMP3 Gene:

WHAMMP3

SOURCE GeneReport for Unigene cluster for WHAMMP3 Gene:

Hs.212670
genes like me logo Genes that share expression patterns with WHAMMP3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for WHAMMP3 Gene

Orthologs for WHAMMP3 Gene

Evolution for WHAMMP3 Gene

ENSEMBL:
Gene Tree for WHAMMP3 (if available)
TreeFam:
Gene Tree for WHAMMP3 (if available)

No data available for Orthologs for WHAMMP3 Gene

Paralogs for WHAMMP3 Gene

(2) SIMAP similar genes for WHAMMP3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with WHAMMP3: view

No data available for Paralogs for WHAMMP3 Gene

Variants for WHAMMP3 Gene

Sequence variations from dbSNP and Humsavar for WHAMMP3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000000797 -- 22,680,181(-) GTTAA(C/T)GCTCC intron-variant
rs1000033730 -- 22,679,827(-) CTCAA(C/T)CTCCT intron-variant
rs1000104210 -- 22,673,244(-) TTTAT(G/T)TATAC intron-variant
rs1000819972 -- 22,662,893(-) ATTTT(A/T)AAAAA upstream-variant-2KB
rs1000900677 -- 22,666,865(-) AAACT(C/T)AACTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WHAMMP3 Gene

Variant ID Type Subtype PubMed ID
dgv2403n100 CNV gain 25217958
dgv2405n100 CNV gain+loss 25217958
dgv2406n100 CNV gain 25217958
dgv2407n100 CNV gain+loss 25217958
dgv2408n100 CNV loss 25217958
dgv2409n100 CNV loss 25217958
dgv2410n100 CNV gain 25217958
dgv4318n54 CNV gain 21841781
dgv708e212 CNV loss 25503493
dgv709e212 CNV gain 25503493
esv2474417 CNV loss 19546169
esv34463 CNV gain 17911159
esv3569265 CNV gain 25503493
esv3635832 CNV loss 21293372
esv3635833 CNV gain 21293372
esv3892626 CNV gain+loss 25118596
nsv1035969 CNV loss 25217958
nsv1040546 CNV gain 25217958
nsv1041383 CNV loss 25217958
nsv1144722 CNV deletion 24896259
nsv433429 CNV gain 18776910
nsv471225 CNV gain 18288195
nsv471226 CNV loss 18288195
nsv511042 OTHER inversion 20534489
nsv568235 CNV loss 21841781
nsv832927 CNV gain 17160897
nsv9187 CNV loss 18304495
nsv974522 CNV duplication 23825009

Relevant External Links for WHAMMP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WHAMMP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WHAMMP3 Gene

Disorders for WHAMMP3 Gene

Relevant External Links for WHAMMP3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WHAMMP3

No disorders were found for WHAMMP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WHAMMP3 Gene

Publications for WHAMMP3 Gene

  1. Genomic analysis of the chromosome 15q11-q13 Prader-Willi syndrome region and characterization of transcripts for GOLGA8E and WHCD1L1 from the proximal breakpoint region. (PMID: 18226259) Jiang YH … Beaudet AL (BMC genomics 2008) 2 3 4 60
  2. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody MC … Nusbaum C (Nature 2006) 4 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for WHAMMP3 Gene

Sources for WHAMMP3 Gene

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