WHAMMP3 Gene
pseudogene GIFtS: 32
GCID: GC15M023188
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WAS protein homolog associated with actin, golgi membranes...(Previous names: WAS protein homology region 2 domain containing 1-like...)
(Previous symbols: WHDC1L1, WHAMML1)
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Aliases
for WHAMMP3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
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| WAS Protein Homolog Associated With Actin, Golgi Membranes And MicrotubulesPseudogene 31 2 3 | | WAS Protein Homology Region 2 Domain Containing 1-Like 11 | | WHAMML11 2 3 | | WAS Protein Homology Region 2 Domain-Containing Protein 1-Like Protein 13 | | WHDC1L11 2 3 | | WH2 Domain-Containing Protein 1-Like Protein 13 | | WAS Protein Homolog Associated With Actin, Golgi Membranes AndMicrotubules-Like 11 | | WHDC1-Like Protein 13 | | WAS Protein Homolog Associated With Actin, Golgi Membranes AndMicrotubules-Like 1 (Pseudogene)1 | | |
| External Ids: | HGNC: 278921 | Entrez Gene: 3390052 | Ensembl: ENSG000001876677 | UniProtKB: Q1A5X73 | | ORGUL members: | |
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| NONCODE:n377771 n386083 n386084 n345980 n386085 | see all 7 |
Export aliases for WHAMMP3 gene to outside databases
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Summaries
for WHAMMP3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for WHAMMP3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000015.9 NC_018926.1 NT_078094.2
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for WHAMMP3
Other transcription factors
Search SABiosciences Chromatin IP Primers for WHAMMP3
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WHAMMP3 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 15q11.2 Ensembl cytogenetic band: 15q11.2 HGNC cytogenetic band: 15q11.2WHAMMP3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 15 GeneLoc Exon Structure GeneLoc location for GC15M023188: view genomic region
(about GC identifiers)
Start:
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23,187,728 bp from pter |
End:
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23,208,737 bp from pter |
Size:
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21,010 bases |
Orientation:
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minus strand |
ORGUL member locations:
Legend (see complete legend)
- n345980
- n377771
- n386084
- n386083
- n377683
- n386085
- n346084
23185170 23196794 23208417 chr15
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Proteins
for WHAMMP3 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: WHAL1_HUMAN, Q1A5X7 (See
protein sequence)Recommended Name: Putative WASP homolog-associated protein with actin, membranes and microtubules-like protein 1 Size: 153 amino acids; 18091 Da
Caution: Could be the product of a pseudogene
Secondary accessions: Q1A5X8 Q52M16 Q52M18Alternative splicing: 2 isoforms: Q1A5X7-1 Q1A5X7-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for WHAMMP3: NX_Q1A5X7
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q1A5X7
WHAMMP3 Protein expression data from MOPED and PaxDb: --
Human Recombinant Protein Products:
WHAMMP3 Antibody Products:
Assay Products for WHAMMP3: |
Protein
Domains /
Families
for WHAMMP3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q1A5X7 |
Function
for WHAMMP3 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for WHAMMP3
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for WHAMMP3
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript Custom all cDNA clones Services for WHAMMP3 | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for WHAMMP3 | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat WHAMMP3 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WHAMMP3 |
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Pathways & Interactions
for WHAMMP3 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for WHAMMP3
|
Drugs & Compounds
for WHAMMP3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for WHAMMP3
Search CenterWatch for drugs/clinical trials and news about WHAMMP3
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Transcripts
for WHAMMP3 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
Unigene Cluster for WHAMMP3: WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3 Hs.744338 [show with all ESTs]Unigene Representative Sequence: BC0489874 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000400153(uc001yvg.3 uc010ayc.3 uc010ayd.3 uc010aye.1)
ENST00000558484 ENST00000340286 ENST00000560810
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for WHAMMP3
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for WHAMMP3
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for WHAMMP3 | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for WHAMMP3 | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat WHAMMP3 |
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for WHAMMP3
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat WHAMMP3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat WHAMMP3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat WHAMMP3 |
Additional cDNA sequence: AL833132.1 BC018097.1 BC044610.1 BC048987.1 BC093703.1 BC093705.1 BC127914.1 DQ309039.1 DQ309040.1 NR_003521.1 7 DOTS entries: DT.100025732 DT.101982486 DT.100779237 DT.65287759 DT.121067073 DT.100779240 DT.121067015 24/42 AceView cDNA sequences (see all 42): AI420533 BC066982 BF195207 AW301214 BG217839 AI075290 AW299265 AI168420 AW467122 BV192833 CA414802 AI522208 CA393410 AW301194 AI633394 AW271395 AI022555 BV193004 BC035099 AK091254 N90425 H91561 H90640 BG720689
GeneLoc Exon Structure
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Expression
for WHAMMP3 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| WHAMMP3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TGTAAATGAT
About this image
Genevestigator expression for WHAMMP3
SOURCE GeneReport for Unigene cluster: Hs.744338
SABiosciences Custom PCR Arrays for WHAMMP3
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for WHAMMP3
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat WHAMMP3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat WHAMMP3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat WHAMMP3 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WHAMMP3 |
Orthologs
for WHAMMP3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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--
ENSEMBL Gene Tree for WHAMMP3 (if available)
TreeFam Gene Tree for WHAMMP3 (if available) |
Paralogs
for WHAMMP3 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
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Genomic Variants
for WHAMMP3 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 15 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for WHAMMP3 (23187728 - 23208737 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for WHAMMP3: -- | SABiosciences Cancer Mutation PCR Assays |
| 1 SABiosciences qBiomarker Copy Number PCR Array containing WHAMMP3: |
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Disorders
/ Diseases
for WHAMMP3 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
WHAMMP3 for disorders About GeneDecksing
1  disease for WHAMMP3: About MalaCardsprader-willi syndrome
Export disorders for WHAMMP3 gene to outside databases
|
Publications
for WHAMMP3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for WHAMMP3 gene integrated from 9 sources:
(articles sorted by number of sources associating them with WHAMMP3) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Genomic analysis of the chromosome 15q11-q13 Prader-Willi syndrome region and characterization of transcripts for GOLGA8E and WHCD1L1 from the proximal breakpoint region. (PubMed id 18226259)1, 2, 3 Jiang Y.-H.... Beaudet A.L. (2008)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
- Analysis of the DNA sequence and duplication history of human chromosome 15. (PubMed id 16572171)2 Zody M.C....Nusbaum C. (2006)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
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External Searches for WHAMMP3 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing WHAMMP3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing WHAMMP3 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing WHAMMP3 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for WHAMMP3 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for WHAMMP3 gene:
Search GeneIP for patents involving WHAMMP3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for WHAMMP3 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for WHAMMP3 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for WHAMMP3 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for WHAMMP3 | | | OriGene Protein Over-expression Lysate for WHAMMP3 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for WHAMMP3 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for WHAMMP3 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for WHAMMP3 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | OriGene Purified Protein for WHAMMP3 | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for WHAMMP3 | | OriGene Custom Protein Services for WHAMMP3 | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat WHAMMP3 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing WHAMMP3 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WHAMMP3 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat WHAMMP3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat WHAMMP3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat WHAMMP3 |
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 |  |  |  | |
| | | | Search Tocris compounds for WHAMMP3 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WHAMMP3 |
|  |  |  | | | | Search ThermoFisher Antibodies for WHAMMP3 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat WHAMMP3 |
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