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Aliases for WHAMMP1 Gene

Aliases for WHAMMP1 Gene

  • WAS Protein Homolog Associated With Actin, Golgi Membranes And Microtubules Pseudogene 1 2 3
  • WAS Protein Homology Region 2 Domain Containing 1 Pseudogene 1 2 3
  • RP11-632K20.7 5
  • WHDC1P1 3

External Ids for WHAMMP1 Gene

Previous HGNC Symbols for WHAMMP1 Gene

  • WHDC1P1

Previous GeneCards Identifiers for WHAMMP1 Gene

  • GC15U901022
  • GC15M032814

Summaries for WHAMMP1 Gene

GeneCards Summary for WHAMMP1 Gene

WHAMMP1 (WAS Protein Homolog Associated With Actin, Golgi Membranes And Microtubules Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for WHAMMP1 Gene

Genomics for WHAMMP1 Gene

Regulatory Elements for WHAMMP1 Gene

Enhancers for WHAMMP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F033067 0.9 ENCODE 10 -531.7 -531687 4.1 ELF3 TBP ZFP64 INSM2 SIN3A SCRT2 ZBTB11 CEBPB ZNF623 ZNF518A FMN1 ENSG00000244952 ENSG00000259287 LOC101929988 LOC101928042 WHAMMP1 ENSG00000212415 ENSG00000279958 HNRNPA1P71
GH15F033410 0.4 ENCODE 15.3 -874.8 -874801 2.6 ZNF548 WHAMMP1 RYR3 GC15P033628
GH15F032659 0.9 Ensembl ENCODE 5.4 -123.0 -122961 1.4 CTCF PKNOX1 FOXA3 BHLHE40 MNT ZIC2 GATA3 CTBP1 FOS FOXP2 ENSG00000212415 GREM1 GOLGA8O WHAMMP1 GC15P032669 SCG5
GH15F032773 0.8 ENCODE 4.7 -237.6 -237629 3.0 SOX13 ELF3 SIN3A ZIC2 ZFHX2 CTBP1 GATA3 FOS MAFK EGR2 GREM1 ENSG00000212415 WHAMMP1 PIR40350 PIR43820
GH15F032662 0.8 Ensembl ENCODE 4.6 -125.9 -125935 0.3 CTCF ZNF654 MBD1 SMC3 TRIM22 REST RAD21 SCG5 GREM1 ENSG00000212415 WHAMMP1 GC15P032669
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around WHAMMP1 on UCSC Golden Path with GeneCards custom track

Promoters for WHAMMP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001793500 726 3201 PKNOX1 FEZF1 ZEB2 OSR2 ZNF121 JUND BCL11A KLF9 FOS KLF8

Genomic Location for WHAMMP1 Gene

Chromosome:
15
Start:
32,519,848 bp from pter
End:
32,536,926 bp from pter
Size:
17,079 bases
Orientation:
Minus strand

Genomic View for WHAMMP1 Gene

Genes around WHAMMP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
WHAMMP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for WHAMMP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for WHAMMP1 Gene

Proteins for WHAMMP1 Gene

Post-translational modifications for WHAMMP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for WHAMMP1 Gene

Domains & Families for WHAMMP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for WHAMMP1 Gene

Function for WHAMMP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for WHAMMP1 Gene

Localization for WHAMMP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for WHAMMP1 Gene

Pathways & Interactions for WHAMMP1 Gene

SuperPathways for WHAMMP1 Gene

No Data Available

Interacting Proteins for WHAMMP1 Gene

Gene Ontology (GO) - Biological Process for WHAMMP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for WHAMMP1 Gene

Transcripts for WHAMMP1 Gene

mRNA/cDNA for WHAMMP1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for WHAMMP1 Gene

WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for WHAMMP1 Gene

No ASD Table

Relevant External Links for WHAMMP1 Gene

GeneLoc Exon Structure for
WHAMMP1
ECgene alternative splicing isoforms for
WHAMMP1

Expression for WHAMMP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for WHAMMP1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for WHAMMP1 Gene



Protein tissue co-expression partners for WHAMMP1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of WHAMMP1 Gene:

WHAMMP1

SOURCE GeneReport for Unigene cluster for WHAMMP1 Gene:

Hs.668734
genes like me logo Genes that share expression patterns with WHAMMP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for WHAMMP1 Gene

Orthologs for WHAMMP1 Gene

Evolution for WHAMMP1 Gene

ENSEMBL:
Gene Tree for WHAMMP1 (if available)
TreeFam:
Gene Tree for WHAMMP1 (if available)

No data available for Orthologs for WHAMMP1 Gene

Paralogs for WHAMMP1 Gene

No data available for Paralogs for WHAMMP1 Gene

Variants for WHAMMP1 Gene

Sequence variations from dbSNP and Humsavar for WHAMMP1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10444845 -- 32,520,653(+) TGGAT(C/T)TTAGA intron-variant
rs111544027 -- 32,525,465(+) ATCTC(A/G)ACCTC intron-variant
rs111808492 -- 32,522,775(+) GGGCA(A/T)TCAAC intron-variant, upstream-variant-2KB
rs112726393 -- 32,533,549(+) TTAAG(A/T)AAATT nc-transcript-variant
rs113008096 -- 32,525,822(+) AATAT(A/T)CATTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for WHAMMP1 Gene

Variant ID Type Subtype PubMed ID
nsv974555 CNV duplication 23825009
nsv9238 CNV gain+loss 18304495
nsv568909 CNV loss 21841781
nsv517740 CNV gain+loss 19592680
nsv469587 CNV loss 16826518
nsv433433 CNV gain 18776910
nsv428302 CNV gain+loss 18775914
nsv1160277 CNV duplication 26073780
nsv1126393 CNV deletion 24896259
nsv1121894 CNV deletion 24896259
esv3892661 CNV gain 25118596
esv33337 CNV gain+loss 17666407
esv2761877 CNV gain+loss 21179565
esv2760365 CNV gain+loss 21179565
esv2760023 CNV gain+loss 17122850
esv2422296 CNV duplication 17116639
dgv4446n54 CNV loss 21841781
dgv30n68 CNV gain+loss 17160897
dgv2548n100 CNV loss 25217958
dgv2547n100 CNV loss 25217958
dgv2544n100 CNV gain+loss 25217958
dgv2543n100 CNV gain 25217958
dgv2538n100 CNV loss 25217958

Relevant External Links for WHAMMP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
WHAMMP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for WHAMMP1 Gene

Disorders for WHAMMP1 Gene

Relevant External Links for WHAMMP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
WHAMMP1

No disorders were found for WHAMMP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for WHAMMP1 Gene

Publications for WHAMMP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for WHAMMP1 Gene

Sources for WHAMMP1 Gene

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