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WFDC13 Gene

protein-coding   GIFtS: 35
GCID: GC20P044330

WAP Four-Disulfide Core Domain 13

(Previous name: chromosome 20 open reading frame 138)
(Previous symbol: C20orf138)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
WAP Four-Disulfide Core Domain 131 2     dJ601O1.32
C20orf1381 2 3     Protease Inhibitor WAP132
WAP132 3     Protein WFDC132
Chromosome 20 Open Reading Frame 1381     WAP Four-Disulfide Core Domain Protein 132

External Ids:    HGNC: 161311   Entrez Gene: 1642372   Ensembl: ENSG000001686347   UniProtKB: Q8IUB53   

Export aliases for WFDC13 gene to outside databases

Previous GC identifers: GC20U900002 GC20P044969 GC20P045017 GC20P045018 GC20P043764 GC20P041072


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for WFDC13 Gene:
This gene encodes a member of the WAP-type four-disulfide core (WFDC) domain family. The WFDC domain, or WAP
signature motif, contains eight cysteines forming four disulfide bonds at the core of the protein, and functions
as a protease inhibitor. Most WFDC gene members are localized to chromosome 20q12-q13 in two clusters:
centromeric and telomeric. This gene belongs to the telomeric cluster. (provided by RefSeq, Jul 2008)

GeneCards Summary for WFDC13 Gene:
WFDC13 (WAP four-disulfide core domain 13) is a protein-coding gene. GO annotations related to this gene include serine-type endopeptidase inhibitor activity.

UniProtKB/Swiss-Prot: WFD13_HUMAN, Q8IUB5
Function: Putative acid-stable proteinase inhibitor (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000020.10  NC_018931.2  NT_011362.11  
Regulatory elements:
   Search for regulatory transcription factor binding sites for WFDC13
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidWFDC13 promoter sequence
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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat WFDC13


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 20q13.12   Ensembl cytogenetic band:  20q13.12   HGNC cytogenetic band: 20q13.11

WFDC13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
WFDC13 gene location

GeneLoc information about chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20P044330:  view genomic region     (about GC identifiers)

Start:
44,330,655 bp from pter      End:
44,337,456 bp from pter
Size:
6,802 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB/Swiss-Prot: WFD13_HUMAN, Q8IUB5 (See protein sequence)
Recommended Name: WAP four-disulfide core domain protein 13 precursor  
Size: 93 amino acids; 10386 Da
Secondary accessions: Q5TEU7 Q8WWK7

Explore the universe of human proteins at neXtProt for WFDC13: NX_Q8IUB5

Explore proteomics data for WFDC13 at MOPED


See WFDC13 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_742002.1  
ENSEMBL proteins: 
 ENSP00000302938  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
WFDC: WAP four-disulfide core domain containing

1 InterPro protein domain:
 IPR008197 WAP-type_4-diS_core

Graphical View of Domain Structure for InterPro Entry Q8IUB5

ProtoNet protein and cluster: Q8IUB5

1 Blocks protein domain: IPB008197 4-disulphide core signature

UniProtKB/Swiss-Prot: WFD13_HUMAN, Q8IUB5
Similarity: Contains 1 WAP domain


Find genes that share domains with WFDC13           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: WFD13_HUMAN, Q8IUB5
Function: Putative acid-stable proteinase inhibitor (By similarity)

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0004867serine-type endopeptidase inhibitor activity IEA--
     
Find genes that share ontologies with WFDC13           About GenesLikeMe


Phenotypes:
     2 GenomeRNAi human phenotypes for WFDC13:
 Decreased Hepatitis C virus re  Synthetic lethal with Ras 

Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
WFD13_HUMAN, Q8IUB5: Secreted (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular3

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region IEA--

Find genes that share ontologies with WFDC13           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for WFDC13
Interactions:

    Search GeneGlobe Interaction Network for WFDC13

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for WFDC13 (WFD13)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for WFDC13 gene: 
NM_172005.1  

Unigene Cluster for WFDC13:

WAP four-disulfide core domain 13
Hs.406733
Unigene Representative Sequence: AF454505
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000305479(uc002xpd.3)
miRNA
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Additional mRNA sequence: AF454505.1 

1 DOTS entry:

DT.99997517 

2 AceView cDNA sequences:

NM_172005 AF454505 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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WFDC13 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
WFDC13 Expression
About this image

WFDC13 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

WFDC13 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.406733
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for WFDC13 gene from Selected species (see all 4)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Wfdc135 WAP four-disulfide core domain 13   --   2 (85.25 cM) 164685107 


ENSEMBL Gene Tree for WFDC13 (if available)
TreeFam Gene Tree for WFDC13 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for WFDC13 (see all 48)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 20 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs61247291,2
H--44335889(+) ATAACC/TTAGTG 1 -- int14Minor allele frequency- T:0.00NS EA 420
rs169905891,2
C,F--44335893(+) CCTAGT/AGACCC 1 -- int15Minor allele frequency- A:0.02NA WA 262
rs1442437271,2
--44335902(+) CCCTGA/TTCCAG 1 -- int10--------
rs2322881,2
C,F,O,A--44335975(-) CAACTC/TGAACC 1 -- int17Minor allele frequency- T:0.05NA WA 266
rs60324471,2
H--44336061(+) ctgtaG/Agcact 1 -- int14Minor allele frequency- A:0.00NS EA 420
rs2322871,2
C,F--44336066(-) tgaccA/Ggtgcc 1 -- int14Minor allele frequency- G:0.09NA WA 124
rs105825251,2
C--44336116(+) aaaat-/AAAA  
        
tattc
1 -- int10--------
rs60324481,2
H--44336134(+) agttcC/Tttagc 1 -- int14Minor allele frequency- T:0.00NS EA 420
rs60176521,2
H--44336140(+) ttagcC/Tttatt 1 -- int14Minor allele frequency- T:0.00NS EA 420
rs759011271,2
C,F--44336206(+) TATAAA/GTACAG 1 -- int11Minor allele frequency- G:0.09WA 118

HapMap Linkage Disequilibrium report for WFDC13 (44330655 - 44337456 bp)

Structural Variations
     Database of Genomic Variants (DGV) 2 variations for WFDC13:    About this table    
Variant IDTypeSubtypePubMed ID
nsv525287CNV Loss19592680
esv2751915CNV Loss17911159

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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Find genes that share disorders with WFDC13           About GenesLikeMe

Genetic Association Database (GAD): WFDC13

Export disorders for WFDC13 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for WFDC13 gene integrated from 10 sources:
(articles sorted by number of sources associating them with WFDC13)
    Utopia: connect your pdf to the dynamic
world of online information

  1. A locus on human chromosome 20 contains several genes expressing protease inhibitor domains with homology to whey acidic protein. (PubMed id 12206714)1, 2, 3 Clauss A.... Lundwall A. (Biochem. J. 2002)
  2. The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (Nature 2001)
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PubMed id 17903299)4 Kathiresan S....Cupples L.A. (BMC Med. Genet. 2007)
  4. The evolution of a genetic locus encoding small serine proteinase inhibitors. (PubMed id 15950183)1 Clauss A....Lundwall A. (Biochem. Biophys. Res. Commun. 2005)
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 164237 HGNC: 16131 AceView: WFDC13 Ensembl:ENSG00000168634 euGenes: HUgn164237
ECgene: WFDC13 H-InvDB: WFDC13

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for WFDC13 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for WFDC13 gene:
Search GeneIP for patents involving WFDC13

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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  Search antibodies-online for antibodies for WFDC13
 antibodies-online kits for WFDC13 (2 products)
  Search antibodies-online for peptides for WFDC13
 antibodies-online proteins for WFDC13 (2 products)
       
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