WFDC1 Gene
protein-coding GIFtS : 49
GCID: GC16 P084328
WAP four-disulfide core domain 1
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Aliasesfor WFDC1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases WAP Four-Disulfide Core Domain 1 1 2 PS201 2 3 5 Prostate Stromal Protein Ps202 3 Ps20 Growth Inhibitor2 3 WAP Four-Disulfide Core Domain 1 Homolog2 WAP Four-Disulfide Core Domain Protein 12
Export aliases for WFDC1 gene to outside databases Previous GC identifers: GC16P075178 GC16P085295 GC16P084067 GC16P084108 GC16P082885 GC16P070082
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Summariesfor WFDC1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for WFDC1 : This gene encodes a member of the WAP-type four disulfide core domain family. The WAP-type four-disulfide core domain, or WAP signature motif, contains eight cysteines forming four disulfide bonds at the core of the protein, and functions as a protease inhibitor in many family members. The encoded protein shares 81% amino acid identity with the rat ps20 protein, which was originally identified as a secreted growth inhibitor. This gene is mapped to chromosome 16q24, an area of frequent loss of heterozygosity in cancers, including prostate, breast and hepatocellular cancers and Wilms' tumor. Owing to its location and a possible growth inhibitory property of its gene product, this gene is suggested to be a tumor suppressor gene. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: WFDC1_HUMAN, Q9HC57 Function : Has growth inhibitory activity (By similarity)Gene Wiki entry for WFDC1
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Genomic Viewsfor WFDC1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000016.9 NC_018927.1 NT_010498.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the WFDC1 gene promoter: NF-1 Pbx1a MyoD HSF1 (long) C/EBPalpha PPAR-gamma1 HSF2 HSF1short PPAR-gamma2 ATF6 Other transcription factors Search SABiosciences Chromatin IP Primers for WFDC1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WFDC1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16q24.3 Ensembl cytogenetic band: 16q24.1 HGNC cytogenetic band: 16q24.1 WFDC1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16P084328: view genomic region
(about GC identifiers )
Start:
84,328,252 bp from pter
End:
84,363,450 bp from pter
Size:
35,199 bases
Orientation:
plus strand
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Proteinsfor WFDC1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: WFDC1_HUMAN, Q9HC57 (See
protein sequence )Recommended Name: WAP four-disulfide core domain protein 1 precursor Size : 220 amino acids; 23977 Da
Subcellular location : Secreted (Potential)
Sequence caution : Sequence=AAG15263.1; Type=Frameshift; Positions=166, 173;
Secondary accessions : D3DUL7 Q8NC27 Q9HAU1Explore the universe of human proteins at neXtProt for WFDC1: NX_Q9HC57 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9HC57 WFDC1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_067020.2 ENSEMBL proteins: ENSP00000219454 ENSP00000456920 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
WFDC1 for ontologies About GeneDecksing WFDC1 Antibody Products: Assay Products for WFDC1:
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Protein
Domains / Familiesfor WFDC1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
WFDC1 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9HC57 ProtoNet protein and cluster: Q9HC57
1 Blocks protein family : IPB008197 4-disulphide core signature UniProtKB/Swiss-Prot: WFDC1_HUMAN, Q9HC57 Similarity : Contains 1 WAP domain
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Functionfor WFDC1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: WFDC1_HUMAN, Q9HC57 Function : Has growth inhibitory activity (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for WFDC1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for WFDC1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: WFDC1 (NM_021197 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for WFDC1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat WFDC1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WFDC1
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003674 molecular_function
ND -- GO:0004867 serine-type endopeptidase inhibitor activity
IEA --
WFDC1 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for WFDC1 :
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Pathways & Interactionsfor WFDC1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for WFDC1 STRING Interaction
Network Preview (showing 5 interactants - click image to see more details)5 Interacting proteins for WFDC1 (ENSP00000219454 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 5 biological process terms (GO ID links to tree view) : About this table
WFDC1 for ontologies About GeneDecksing
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Drugs & Compoundsfor WFDC1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for WFDC1 Search CenterWatch for drugs/clinical trials and news about WFDC1
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Transcriptsfor WFDC1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for WFDC1 gene: NM_021197.2 Unigene Cluster for WFDC1:
WAP four-disulfide core domain 1 Hs.36688 [show with all ESTs ] Unigene Representative Sequence: AK128711 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000219454 (uc002fhv.3 uc002fhw.3 ) ENST00000568638 ENST00000567056 ENST00000564658 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for WFDC1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for WFDC1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: WFDC1 (NM_021197 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for WFDC1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat WFDC1
Additional cDNA sequence: AF169631.1 AF302109.1 AK075061.1 AK128711.1 AL713785.1 BC029159.1
4 DOTS entries : DT.212641 DT.100777273
DT.101962741 DT.120691337 24/110 AceView cDNA sequences (see all 110 ):
BF447098 AI360465 W25322 CR615719 BQ678502 AL545137 BM663231 AI289243 BF725477 AI742302 AI224935 CR604862 AI142995 CR595501 AW052100 AI925090 CR608359 BF449060 CR610530 AI190199 AI246305 BQ670532 AI568809 AI199143 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for WFDC1 About this scheme ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b SP1 :                     SP2 :                     SP3 :                    
ECgene alternative splicing isoforms for WFDC1
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Expression for WFDC1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section WFDC1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AAAGCATTTC
About this image WFDC1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Stem Cell Differentiation: 1 LifeMap Cell Name Category Extraembryonic endoderm-like cells (Generation of extrae... )Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See WFDC1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for WFDC1 SOURCE GeneReport for Unigene cluster: Hs.36688 SABiosciences Custom PCR Arrays for WFDC1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for WFDC1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat WFDC1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat WFDC1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat WFDC1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WFDC1
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Orthologsfor WFDC1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for WFDC1 gene from 4/10 species (see all 10 ) About this table
ENSEMBL Gene Tree for WFDC1 (if available)TreeFam Gene Tree for WFDC1 (if available)
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Paralogsfor WFDC1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor WFDC1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 16 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for WFDC1 (84328252 - 84363450 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for WFDC1: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing WFDC1
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Disorders
/ Diseasesfor WFDC1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
WFDC1 for disorders About GeneDecksing
OMIM gene information: 605322
OMIM disorders : --13 diseases for WFDC1 : About MalaCards prostatitis hepatocellular cancer wilms tumor rheumatoid arthritis hepatocellular carcinoma arthritis retinoblastoma breast carcinoma prostate cancer carcinoma immunodeficiency melanoma hiv type 1 1 Novoseek disease relationship for WFDC1 gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
tumors
11
10
14522910 (3), 18842679 (2), 17210724 (1)
Human Genome Epidemiology (HuGE) Navigator: WFDC1 (2 documents) Export disorders for WFDC1 gene to outside databases
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Publicationsfor WFDC1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for WFDC1 gene, integrated from 9 sources (see all 17 ): (articles sorted by number of sources associating them with WFDC1) Utopia : connect your pdf to the dynamic world of online information
The WFDC1 gene encoding ps20 localizes to 16q24, a region of LOH in multiple cancers. (PubMed id 10967136) 1 , 2 , 3, 9 Larsen M....Rowley D.R. (2000) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Promotion of angiogenesis by ps20 in the differential reactive stroma prostate cancer xenograft model. (PubMed id 14522910) 1 , 9 McAlhany S.J....Rowley D.R. (2003) WFDC1/ps20 is a novel innate immunomodulatory signature protein of human immunodeficiency virus (HIV)-permissive CD4+ CD45RO+ memory T cells that promotes infection by upregulating CD54 integrin expression and is elevated in HIV type 1 infection. (PubMed id 17942534) 1 , 9 Alvarez R....Vyakarnam A. (2008) Modulated expression of WFDC1 during carcinogenesis and cellular senescence. (PubMed id 18842679) 1 , 9 Madar S....Rotter V. (2008) Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PubMed id 22589738) 1 Fox C.S....Borecki I.B. (2012) WFDC1 expression identifies memory CD4 T-lymphocytes rendered vulnerable to cell-cell HIV-1 transfer by promoting intercellular adhe sive junctions. (PubMed id 21545747) 1 Alvarez R.A....Vyakarnam A. (2011) Supervised machine learning and logistic regression i dentifies novel epistatic risk factors with PTPN22 for rheumatoid arthritis. (PubMed id 20090771) 1 Briggs F.B....Barcellos L.F. (2010) Expression and functional analysis of the WAP four di sulfide core domain 1 gene in human melanoma. (PubMed id 19488830) 1 Liu S....Riker A.I. (2009)
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External Searches for WFDC1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing WFDC1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing WFDC1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing WFDC1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for WFDC1 gene: Search GeneIP for patents involving WFDC1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor WFDC1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for WFDC1 OriGene shRNA RFP for WFDC1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for WFDC1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for WFDC1 OriGene Protein Over-expression Lysate for WFDC1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for WFDC1 OriGene 3'-UTR Clone for WFDC1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for WFDC1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for WFDC1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for WFDC1 OriGene Custom Protein Services for WFDC1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat WFDC1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing WFDC1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat WFDC1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat WFDC1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat WFDC1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat WFDC1
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WFDC1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for WFDC1
Search ThermoFisher Antibodies for WFDC1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat WFDC1
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